Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05342 and BPUM_3144

See Amino acid alignment / Visit BSNT_05342 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:56
# Commandline: needle
#    -asequence dna-align/BSNT_05342___yvlB.1.24716.seq
#    -bsequence dna-align/BPUM_3144.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05342___yvlB-BPUM_3144.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05342___yvlB-BPUM_3144.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05342___yvlB
# 2: BPUM_3144
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1171
# Identity:     773/1171 (66.0%)
# Similarity:   773/1171 (66.0%)
# Gaps:         152/1171 (13.0%)
# Score: 2312.5
# 
#
#=======================================

BSNT_05342___      1 ATGATGCAAGAAAAGGAACGAATCCTTAAGCTT-GTTGAGGAAGGAAAGC     49
                        |||.|.|||||.|||||.|| .||||..|| ||.||.||.||.|  |
BPUM_3144          1 ---ATGAATGAAAAAGAACGCAT-TTTAAAATTAGTAGAAGACGGGA--C     44

BSNT_05342___     50 -TTA-CAGCACAAGAAGCTTTGACACTGATTGAAAAGCTTGACAGCGACT     97
                      ||| |.|||.|||||||..|.||.||..|||||||.||.|         
BPUM_3144         45 ATTATCGGCAAAAGAAGCGATTACGCTACTTGAAAAACTAG---------     85

BSNT_05342___     98 ACAAGGAAAAAG------------AAGAGAAAA-TCACAGCGCTCTCAGT    134
                        |||  ||||            |..|||||| ||| |.||||    |.
BPUM_3144         86 ---AGG--AAAGTCCGTCTGTTTCATTAGAAAAGTCA-ACCGCT----GA    125

BSNT_05342___    135 TCA---CGTTCATGACGAGGAAGAGC---CATTTACAACGGCAAA--AAA    176
                     |||   |.|||||||  ||.||.|||   .|.|.|.|   |||||  |||
BPUM_3144        126 TCACACCTTTCATGA--AGAAAAAGCTGGTACTGAGA---GCAAAGGAAA    170

BSNT_05342___    177 AGAAAGCGGCAAGCCGTCTTTAGGAGCCAAGCTGTTTGACTGGATTGATT    226
                     .|..|.||..||    ||||  ||.||.||.|||||||..|||.|.||.|
BPUM_3144        171 TGGTACCGAAAA----TCTT--GGTGCAAAACTGTTTGGTTGGTTAGACT    214

BSNT_05342___    227 CTGCTGTGAAAAAGGTCAAGGAAGTTGACCTTGATTTAAACTTTGGCCAT    276
                     ||||.|||||||||||.||.||.||.||.|||||||||||.|||||.||.
BPUM_3144        215 CTGCGGTGAAAAAGGTGAAAGACGTAGATCTTGATTTAAATTTTGGACAG    264

BSNT_05342___    277 GCGTATGATGTTCAGCACATTTTTCAATTTAAAGA-TACTGACTTTTCCA    325
                     .||...||.|||.||||||||||.||.||.||||| ..||.|||.|..||
BPUM_3144        265 TCGGTCGACGTTGAGCACATTTTCCAGTTCAAAGACGCCTCACTCTCTCA    314

BSNT_05342___    326 GTGTTGAGCTGCAAATTGCGAATGGCAGCGTGAATATCGTCCCTTGGGAA    375
                      |.|.||..|.|||.|.|||||.|||||..|.|||.|..|.||||||||.
BPUM_3144        315 -TTTAGATATTCAATTGGCGAACGGCAGTCTCAATGTGATGCCTTGGGAC    363

BSNT_05342___    376 GATGACGATATCAGAGCGGAATGCCAGGCGAAGGTATATCGCGCTGACAG    425
                     |||..||||||..||||.||||||||.||.||..|.||.||.||.|| ||
BPUM_3144        364 GATAGCGATATTCGAGCAGAATGCCATGCAAAAATCTACCGTGCAGA-AG    412

BSNT_05342___    426 CCAGGA-TGC-GGCGAGACACGC-ATTTCTTCAGCATATT-GAATGTGAA    471
                     .| ||| .|| |||.||||| || ||||||..|.|| ||| ||.||.|..
BPUM_3144        413 AC-GGAGAGCAGGCAAGACA-GCAATTTCTCAATCA-ATTGGACTGCGGC    459

BSNT_05342___    472 ATCAAAGGAAATAAATTTTTTATCCGTACTGAGAAAAAGACGATGAAAAC    521
                     .|..||||..||||||||||||||||.||.||.||.||||||||||||..
BPUM_3144        460 CTTGAAGGGGATAAATTTTTTATCCGGACCGAAAAGAAGACGATGAAAGT    509

BSNT_05342___    522 GAATGTCACTTTGTATATTCCTCAGAAGGAGTAT-------GATAAGATT    564
                     .|||||||||||.|||.|.||       |.||||       |||||.||.
BPUM_3144        510 CAATGTCACTTTATATGTACC-------GCGTATCCAATACGATAAAATC    552

BSNT_05342___    565 CGGGTGAAGCTGTTTAACGGTCCGGTCAGAGGGGAACATTTACATGTAAA    614
                     ..||||||.||||||||.||||||.|..|.||||||.|..||.|...|||
BPUM_3144        553 AAGGTGAAACTGTTTAATGGTCCGATTCGCGGGGAAAAGCTAAAGACAAA    602

BSNT_05342___    615 AGAGTTCTCAGCGAAAACGACAAACGGCGTGCTGTCGT-TCT-----CGC    658
                     |||..|..|.||||||||.||.||     ||.|||||| |||     |.|
BPUM_3144        603 AGAACTTGCTGCGAAAACCACCAA-----TGGTGTCGTCTCTTTTGCCTC    647

BSNT_05342___    659 ACTTAACAGCCGAAAAA----GCCATAGCTGAAACGGCCAACGGGCAAAT    704
                     |  |.||||.||.||||    |..||   ||||||.||.|||||.|||||
BPUM_3144        648 A--TTACAGGCGGAAAAGGTTGGAAT---TGAAACAGCAAACGGACAAAT    692

BSNT_05342___    705 TAAACTCGCCAGCCAC-AGCTGCGGAACGATAGAAGCGGAAACCATTAAC    753
                     ||||||.||....||| || ||.||.|.|||.||||..|||||||||||.
BPUM_3144        693 TAAACTGGCGGATCACGAG-TGTGGTATGATTGAAGTAGAAACCATTAAT    741

BSNT_05342___    754 GGATTGATCGATCTCCGAGGGAAAAGCGAATCCATTGACGTTCAAAGCTT    803
                     ||..||||.||.||.||.||||||||.||.||.|||||.|..||||||||
BPUM_3144        742 GGGCTGATTGACCTGCGCGGGAAAAGTGAGTCAATTGATGCCCAAAGCTT    791

BSNT_05342___    804 TAACGGAAATATTGCGATTAA-----CGTAACAGAATCAGACTGCCGCTC    848
                     |||||||||.|||||..||.|     ||.|..|||     |.|||||.||
BPUM_3144        792 TAACGGAAACATTGCTGTTCAGCTGTCGGATGAGA-----AGTGCCGTTC    836

BSNT_05342___    849 CATTTATGCAAAAACAACGACTGGAAGTGTGGAGCTTGCGATTCCGGACG    898
                     |||||||||.|||||.||.||.||.||||||||     ||  |||   .|
BPUM_3144        837 CATTTATGCGAAAACGACAACAGGCAGTGTGGA-----CG--TCC---AG    876

BSNT_05342___    899 ATCTC----------GCAGTGAAGGCAGAGCTGAAAAGCAATCTTGGTTC    938
                     |||.|          |||||||..||.||||||||||||||||||||.||
BPUM_3144        877 ATCCCGCGTGCGTGTGCAGTGACCGCTGAGCTGAAAAGCAATCTTGGGTC    926

BSNT_05342___    939 GCTGTCCCATGAATTAATGGATGTTGAGATGCTGAAGGAAAAAAATGATA    988
                     ..|.||.||.||.||..|.||||..||||||.|.||.||.||||||||.|
BPUM_3144        927 TATTTCTCACGATTTGCTTGATGCAGAGATGATTAAAGAGAAAAATGAGA    976

BSNT_05342___    989 CCATT-CAAAAAGAAATGATGTTCACTTCAAAT---CAGGCACATGATCA   1034
                      |||| ||||||||||..|||.|||...|.|||   |||||| .|||.||
BPUM_3144        977 -CATTACAAAAAGAAAAAATGATCAAAGCCAATCAACAGGCA-GTGAACA   1024

BSNT_05342___   1035 AAACATCACCGTCTTCTCAGAATCACTAACAGGCGCCATCAAACTAAAGT   1084
                     ..|.||  ||.|.||..|||||.||..||||||..|.||..||.|||||.
BPUM_3144       1025 GTATAT--CCATTTTTGCAGAAACAAAAACAGGTTCAATACAAGTAAAGC   1072

BSNT_05342___   1085 ACTCA--CAGA-----GGTGA   1098
                     || ||  ||||     .||||
BPUM_3144       1073 AC-CAATCAGACAAGGAGTGA   1092


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