Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05342 and BPUM_3144
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_05342___yvlB.1.24716.seq
# -bsequence dna-align/BPUM_3144.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05342___yvlB-BPUM_3144.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05342___yvlB-BPUM_3144.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05342___yvlB
# 2: BPUM_3144
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1171
# Identity: 773/1171 (66.0%)
# Similarity: 773/1171 (66.0%)
# Gaps: 152/1171 (13.0%)
# Score: 2312.5
#
#
#=======================================
BSNT_05342___ 1 ATGATGCAAGAAAAGGAACGAATCCTTAAGCTT-GTTGAGGAAGGAAAGC 49
|||.|.|||||.|||||.|| .||||..|| ||.||.||.||.| |
BPUM_3144 1 ---ATGAATGAAAAAGAACGCAT-TTTAAAATTAGTAGAAGACGGGA--C 44
BSNT_05342___ 50 -TTA-CAGCACAAGAAGCTTTGACACTGATTGAAAAGCTTGACAGCGACT 97
||| |.|||.|||||||..|.||.||..|||||||.||.|
BPUM_3144 45 ATTATCGGCAAAAGAAGCGATTACGCTACTTGAAAAACTAG--------- 85
BSNT_05342___ 98 ACAAGGAAAAAG------------AAGAGAAAA-TCACAGCGCTCTCAGT 134
||| |||| |..|||||| ||| |.|||| |.
BPUM_3144 86 ---AGG--AAAGTCCGTCTGTTTCATTAGAAAAGTCA-ACCGCT----GA 125
BSNT_05342___ 135 TCA---CGTTCATGACGAGGAAGAGC---CATTTACAACGGCAAA--AAA 176
||| |.||||||| ||.||.||| .|.|.|.| ||||| |||
BPUM_3144 126 TCACACCTTTCATGA--AGAAAAAGCTGGTACTGAGA---GCAAAGGAAA 170
BSNT_05342___ 177 AGAAAGCGGCAAGCCGTCTTTAGGAGCCAAGCTGTTTGACTGGATTGATT 226
.|..|.||..|| |||| ||.||.||.|||||||..|||.|.||.|
BPUM_3144 171 TGGTACCGAAAA----TCTT--GGTGCAAAACTGTTTGGTTGGTTAGACT 214
BSNT_05342___ 227 CTGCTGTGAAAAAGGTCAAGGAAGTTGACCTTGATTTAAACTTTGGCCAT 276
||||.|||||||||||.||.||.||.||.|||||||||||.|||||.||.
BPUM_3144 215 CTGCGGTGAAAAAGGTGAAAGACGTAGATCTTGATTTAAATTTTGGACAG 264
BSNT_05342___ 277 GCGTATGATGTTCAGCACATTTTTCAATTTAAAGA-TACTGACTTTTCCA 325
.||...||.|||.||||||||||.||.||.||||| ..||.|||.|..||
BPUM_3144 265 TCGGTCGACGTTGAGCACATTTTCCAGTTCAAAGACGCCTCACTCTCTCA 314
BSNT_05342___ 326 GTGTTGAGCTGCAAATTGCGAATGGCAGCGTGAATATCGTCCCTTGGGAA 375
|.|.||..|.|||.|.|||||.|||||..|.|||.|..|.||||||||.
BPUM_3144 315 -TTTAGATATTCAATTGGCGAACGGCAGTCTCAATGTGATGCCTTGGGAC 363
BSNT_05342___ 376 GATGACGATATCAGAGCGGAATGCCAGGCGAAGGTATATCGCGCTGACAG 425
|||..||||||..||||.||||||||.||.||..|.||.||.||.|| ||
BPUM_3144 364 GATAGCGATATTCGAGCAGAATGCCATGCAAAAATCTACCGTGCAGA-AG 412
BSNT_05342___ 426 CCAGGA-TGC-GGCGAGACACGC-ATTTCTTCAGCATATT-GAATGTGAA 471
.| ||| .|| |||.||||| || ||||||..|.|| ||| ||.||.|..
BPUM_3144 413 AC-GGAGAGCAGGCAAGACA-GCAATTTCTCAATCA-ATTGGACTGCGGC 459
BSNT_05342___ 472 ATCAAAGGAAATAAATTTTTTATCCGTACTGAGAAAAAGACGATGAAAAC 521
.|..||||..||||||||||||||||.||.||.||.||||||||||||..
BPUM_3144 460 CTTGAAGGGGATAAATTTTTTATCCGGACCGAAAAGAAGACGATGAAAGT 509
BSNT_05342___ 522 GAATGTCACTTTGTATATTCCTCAGAAGGAGTAT-------GATAAGATT 564
.|||||||||||.|||.|.|| |.|||| |||||.||.
BPUM_3144 510 CAATGTCACTTTATATGTACC-------GCGTATCCAATACGATAAAATC 552
BSNT_05342___ 565 CGGGTGAAGCTGTTTAACGGTCCGGTCAGAGGGGAACATTTACATGTAAA 614
..||||||.||||||||.||||||.|..|.||||||.|..||.|...|||
BPUM_3144 553 AAGGTGAAACTGTTTAATGGTCCGATTCGCGGGGAAAAGCTAAAGACAAA 602
BSNT_05342___ 615 AGAGTTCTCAGCGAAAACGACAAACGGCGTGCTGTCGT-TCT-----CGC 658
|||..|..|.||||||||.||.|| ||.|||||| ||| |.|
BPUM_3144 603 AGAACTTGCTGCGAAAACCACCAA-----TGGTGTCGTCTCTTTTGCCTC 647
BSNT_05342___ 659 ACTTAACAGCCGAAAAA----GCCATAGCTGAAACGGCCAACGGGCAAAT 704
| |.||||.||.|||| |..|| ||||||.||.|||||.|||||
BPUM_3144 648 A--TTACAGGCGGAAAAGGTTGGAAT---TGAAACAGCAAACGGACAAAT 692
BSNT_05342___ 705 TAAACTCGCCAGCCAC-AGCTGCGGAACGATAGAAGCGGAAACCATTAAC 753
||||||.||....||| || ||.||.|.|||.||||..|||||||||||.
BPUM_3144 693 TAAACTGGCGGATCACGAG-TGTGGTATGATTGAAGTAGAAACCATTAAT 741
BSNT_05342___ 754 GGATTGATCGATCTCCGAGGGAAAAGCGAATCCATTGACGTTCAAAGCTT 803
||..||||.||.||.||.||||||||.||.||.|||||.|..||||||||
BPUM_3144 742 GGGCTGATTGACCTGCGCGGGAAAAGTGAGTCAATTGATGCCCAAAGCTT 791
BSNT_05342___ 804 TAACGGAAATATTGCGATTAA-----CGTAACAGAATCAGACTGCCGCTC 848
|||||||||.|||||..||.| ||.|..||| |.|||||.||
BPUM_3144 792 TAACGGAAACATTGCTGTTCAGCTGTCGGATGAGA-----AGTGCCGTTC 836
BSNT_05342___ 849 CATTTATGCAAAAACAACGACTGGAAGTGTGGAGCTTGCGATTCCGGACG 898
|||||||||.|||||.||.||.||.|||||||| || ||| .|
BPUM_3144 837 CATTTATGCGAAAACGACAACAGGCAGTGTGGA-----CG--TCC---AG 876
BSNT_05342___ 899 ATCTC----------GCAGTGAAGGCAGAGCTGAAAAGCAATCTTGGTTC 938
|||.| |||||||..||.||||||||||||||||||||.||
BPUM_3144 877 ATCCCGCGTGCGTGTGCAGTGACCGCTGAGCTGAAAAGCAATCTTGGGTC 926
BSNT_05342___ 939 GCTGTCCCATGAATTAATGGATGTTGAGATGCTGAAGGAAAAAAATGATA 988
..|.||.||.||.||..|.||||..||||||.|.||.||.||||||||.|
BPUM_3144 927 TATTTCTCACGATTTGCTTGATGCAGAGATGATTAAAGAGAAAAATGAGA 976
BSNT_05342___ 989 CCATT-CAAAAAGAAATGATGTTCACTTCAAAT---CAGGCACATGATCA 1034
|||| ||||||||||..|||.|||...|.||| |||||| .|||.||
BPUM_3144 977 -CATTACAAAAAGAAAAAATGATCAAAGCCAATCAACAGGCA-GTGAACA 1024
BSNT_05342___ 1035 AAACATCACCGTCTTCTCAGAATCACTAACAGGCGCCATCAAACTAAAGT 1084
..|.|| ||.|.||..|||||.||..||||||..|.||..||.|||||.
BPUM_3144 1025 GTATAT--CCATTTTTGCAGAAACAAAAACAGGTTCAATACAAGTAAAGC 1072
BSNT_05342___ 1085 ACTCA--CAGA-----GGTGA 1098
|| || |||| .||||
BPUM_3144 1073 AC-CAATCAGACAAGGAGTGA 1092
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