Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05339 and BPUM_3142
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_05339___yvlD.1.24716.seq
# -bsequence dna-align/BPUM_3142.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05339___yvlD-BPUM_3142.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05339___yvlD-BPUM_3142.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05339___yvlD
# 2: BPUM_3142
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 400
# Identity: 266/400 (66.5%)
# Similarity: 266/400 (66.5%)
# Gaps: 53/400 (13.2%)
# Score: 865.5
#
#
#=======================================
BSNT_05339___ 1 ATGGTAAAATGGGCAGTCAGCATTTTAGTCAATGCATTGTTATTAATCGT 50
|||.|.|.||||...|||||.|||||||||||||||||..|.||||||||
BPUM_3142 1 ATGTTTAGATGGATCGTCAGTATTTTAGTCAATGCATTACTTTTAATCGT 50
BSNT_05339___ 51 CATTGATGGATATATTGACTC---CATCCATATCA-------GCAGC--- 87
.||||.|||||||.||||.|| |||.| |..|| |||||
BPUM_3142 51 TATTGCTGGATATTTTGATTCGGGCATTC-TGCCAGGGCTTGGCAGCGTT 99
BSNT_05339___ 88 ------------ATTGGGGCAGCGATTATCGCCAGCCTCATTTTATCGAT 125
.||||.|||||.|||.|.||.||..|.||||| ||
BPUM_3142 100 TATATTGAAGGGTTTGGCGCAGCCATTGTGGCAAGTATTATTTT----AT 145
BSNT_05339___ 126 CTTAAACGTGCTGA---------TTAAACCGCTTTTAATTATCTTTACAC 166
||| ||||.| |.||.|||.||||.||.||.||.||.|
BPUM_3142 146 CTT-----TGCTCAATATTTTAGTGAAGCCGTTTTTGATCATTTTAACGC 190
BSNT_05339___ 167 TGCCGGTCACCATGGTGACGCTTGGACTCTTCTTGTTTGTGATTAACGCC 216
|.||.||.|||.|..|.||.||.|||.|.|||||||||||||||||.|||
BPUM_3142 191 TTCCAGTAACCGTCCTCACACTAGGATTGTTCTTGTTTGTGATTAATGCC 240
BSNT_05339___ 217 ATCACGCTTATGATGACCGCGTCCATTATGGGTGACAGCTTTCAAATCGA 266
|||||.||.||||||||..|...|.|||||||.||.||.|||.|.||.||
BPUM_3142 241 ATCACACTCATGATGACATCAAGCTTTATGGGCGATAGTTTTAACATTGA 290
BSNT_05339___ 267 CGGCTTCGGCACAGCGATATGGGCAT--CCGTTATCCTGTCGGTCTTCCA 314
.||.||.||.||.||.||.||| || |.||.|||.|.||..|.|||||
BPUM_3142 291 TGGGTTTGGAACGGCCATTTGG--ATGGCTGTCATCTTATCCATTTTCCA 338
BSNT_05339___ 315 TTTGCTGATTCAAAAAGGCATTTTAGAGCCGCTTA--GAAAAAAA--TAA 360
|.||.||||.||||||||.|||.|.|||||| ||| |||||||| |||
BPUM_3142 339 TCTGTTGATACAAAAAGGAATTGTGGAGCCG-TTAGCGAAAAAAAGCTAA 387
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