Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05330 and BPUM_3139

See Amino acid alignment / Visit BSNT_05330 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_05330___nagB.1.24716.seq
#    -bsequence dna-align/BPUM_3139___nagB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05330___nagB-BPUM_3139___nagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05330___nagB-BPUM_3139___nagB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05330___nagB
# 2: BPUM_3139___nagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 791
# Identity:     481/791 (60.8%)
# Similarity:   481/791 (60.8%)
# Gaps:         127/791 (16.1%)
# Score: 1281.0
# 
#
#=======================================

BSNT_05330___      1 ATGAAAGTAATGGAATGTCAAACGTATGAAGAGC---TAAGCCAAAAAGC     47
                     |||||..|.||.||||.|.||   .||.||||.|   ||.||.||.||||
BPUM_3139___n      1 ATGAACATCATTGAATTTGAA---GATAAAGAACAATTAGGCAAAGAAGC     47

BSNT_05330___     48 AG----CCAGAATAACG-GCAGATACAATCAAAGAAAAACCTGATGCCGT     92
                     ||    ||.|   |.|| ||  .|||||||......|||||.||||||||
BPUM_3139___n     48 AGCAGCCCTG---ATCGCGC--GTACAATCGCTTCTAAACCAGATGCCGT     92

BSNT_05330___     93 TCTCGGGTTAGCGACAGGCGGCACACCGGAAGGCACGTATCGCGAGCTGA    142
                     .|||||..|.||.||.||.||.|||||....|..||.||||..|||.|.|
BPUM_3139___n     93 ACTCGGCCTGGCAACGGGGGGTACACCTCTTGATACATATCAAGAGTTAA    142

BSNT_05330___    143 TCCGCCTGCACCAA--ACTGAGAATCTCTCATTTCA---AAACATCACTA    187
                     |.|.|||..|.|||  || .|.||| |.||| ||||   |||||  |..|
BPUM_3139___n    143 TTCACCTTTATCAATCAC-AACAAT-TGTCA-TTCAAACAAACA--AAAA    187

BSNT_05330___    188 CAGTTAATTTGGATGAGTACGCCGGACT--------TTCAAGCAACGCCC    229
                     ||||.|||||.||.||.||.||.|||||        .|||.|.|      
BPUM_3139___n    188 CAGTCAATTTAGACGAATATGCAGGACTCGATCCAGATCATGAA------    231

BSNT_05330___    230 CGAACAG--CTATCACTTCTATATGAATGAC--CGTTTATTTCAGCATA-    274
                       ||.||  .|||.||  |||||||||  ||  |.|||||||.|.|||| 
BPUM_3139___n    232 --AATAGTTATATGAC--CTATATGAA--ACGTCATTTATTTGATCATAT    275

BSNT_05330___    275 ------TCGACAGCAAGCCTAGCCGGCATTTTATTCCGAATGGAAATGCA    318
                           ||.||||.|       .|.|.||||..||||.|||||...|.||
BPUM_3139___n    276 TGATCTTCCACAGGA-------TCAGTATTTCCTTCCAAATGGCGCTTCA    318

BSNT_05330___    319 GACGATTTGGAAGCCGAATGCAGACGGTATGAACAGCT-AGTCGAG-TCC    366
                     ...|||||.|||...||||||..|.|.|||||.||||| |.||.|| |  
BPUM_3139___n    319 CCTGATTTAGAAAAGGAATGCTTAAGATATGATCAGCTCATTCAAGAT--    366

BSNT_05330___    367 CTCGGCGGCACTGACATTCAGCTTCTCGGCATCGGCCGAAACGGGCACAT    416
                     .|.|||||||..|||.|.||||||||.||.|||||.|.|||.||.||.||
BPUM_3139___n    367 ATAGGCGGCATCGACCTGCAGCTTCTTGGAATCGGTCAAAATGGACATAT    416

BSNT_05330___    417 CGGCTTTAACGAACCGGGAACGTCTTTCAAGTCGCGAACTCATGTTGTGA    466
                     .||.||||||||.||.||.||..|.||.||.||....||||||||.|||.
BPUM_3139___n    417 TGGTTTTAACGAGCCCGGTACCCCATTTAACTCAATGACTCATGTCGTGC    466

BSNT_05330___    467 CATTAAATGAGCAAACCCGCCAAGCGAATGCCAGATATTTTCCTTCCATA    516
                     .|.||.||||..|.||.||.||.||.|||||..||||.|||.||||.||.
BPUM_3139___n    467 AACTAGATGAAAATACGCGGCAGGCCAATGCACGATACTTTTCTTCTATT    516

BSNT_05330___    517 GA-CAGCGTGCCGAAAAAAGCGCTCACAATGGGAATT-CAAACGATACTC    564
                     || .|| ||.||.|.|.|.||..||||.|||||.||| |.|.| ||.||.
BPUM_3139___n    517 GATGAG-GTCCCTACACATGCCATCACCATGGGCATTGCGAGC-ATTCTT    564

BSNT_05330___    565 TCAAGCAAGCGCATTCTGCTGCT--CATTTCTGGAAAAAGCAAAGCGGAA    612
                     |||||.||....||.||.||.||  ||  ||.||||||...|||||..||
BPUM_3139___n    565 TCAAGTAAAAAGATACTCCTACTTGCA--TCAGGAAAATCAAAAGCAAAA    612

BSNT_05330___    613 GCTGTTCGTAAGCTG---------TTAGAA-----GGAAACATAAGCGAA    648
                     |            ||         ||||||     |||.|.|.|..|  |
BPUM_3139___n    613 G------------TGATACAATACTTAGAACAGACGGAGATACATCC--A    648

BSNT_05330___    649 GATTTTCCCGCATCTGCTTTGCACCTGCATTCCGATGTTACGGTTTTGAT    698
                     ||.||.||.|||||||||.||.|.||.|||...|||||.|||.|||||||
BPUM_3139___n    649 GACTTCCCAGCATCTGCTCTGAAACTTCATGAAGATGTGACGATTTTGAT    698

BSNT_05330___    699 TGATCGTGAAGC----------CGCGTCATTAAGACCTTGA    729
                     ||||||.|||||          |||     |||        
BPUM_3139___n    699 TGATCGAGAAGCTGGTTCTCTACGC-----TAA--------    726


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