Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05326 and BPUM_3136

See Amino acid alignment / Visit BSNT_05326 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_05326___lgt.1.24716.seq
#    -bsequence dna-align/BPUM_3136___lgt.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05326___lgt-BPUM_3136___lgt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05326___lgt-BPUM_3136___lgt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05326___lgt
# 2: BPUM_3136___lgt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity:     606/853 (71.0%)
# Similarity:   606/853 (71.0%)
# Gaps:          71/853 ( 8.3%)
# Score: 2053.0
# 
#
#=======================================

BSNT_05326___      1 ATGAATGAAGCGATAGAACCACTCAATCCGATAGCATTTCAGCTGGGGCC     50
                     |||||.||||||||..|.|||.|..|||||||.||.||||||||.||.||
BPUM_3136___l      1 ATGAACGAAGCGATTCAGCCAATTGATCCGATTGCTTTTCAGCTCGGACC     50

BSNT_05326___     51 GTTAGCCGTCCATTGGTACGGAATCATTATCGGTCTCGGTGCTTTGCTCG    100
                     ..|..|.||.||||||||.||..|.||.||.||..|.||.||.||.||.|
BPUM_3136___l     51 TCTTTCGGTTCATTGGTATGGTGTGATCATTGGGGTAGGAGCCTTACTAG    100

BSNT_05326___    101 GGCTGTGGATTGCGATGAGGGAAAGTGAAAAACGGGGGCTGCAGAAAGAT    150
                     |.||.|||.|.||..||||.|||.||||.|||.|.||..|..|.||||||
BPUM_3136___l    101 GACTCTGGCTCGCACTGAGAGAATGTGAGAAAAGAGGAATCAATAAAGAT    150

BSNT_05326___    151 ACGTTTATTGATCTTGTCCTGTTTGCCATTCCAATTGCGATTATTTGCGC    200
                     ||||||||||||.|..||.|.||||||||||||||.|||||||||||.||
BPUM_3136___l    151 ACGTTTATTGATTTAATCTTATTTGCCATTCCAATAGCGATTATTTGTGC    200

BSNT_05326___    201 GCGAATTTATTACGTTGCCTTTGAATGGGACTATTAT--GCGGCAC----    244
                     .|||||||||||.||..||||.||||||||.||.|||  ||.||||    
BPUM_3136___l    201 ACGAATTTATTATGTATCCTTCGAATGGGATTACTATCAGCAGCACCCAA    250

BSNT_05326___    245 ATCCGGGAGAAATCATTAAGATTTGGAAGGGCGGCATTGCCATTCATGGC    294
                     ||      ||||||||||||||||||.|.|||||.|||||||||||||||
BPUM_3136___l    251 AT------GAAATCATTAAGATTTGGCATGGCGGAATTGCCATTCATGGC    294

BSNT_05326___    295 GGATTAATCGGCGCCATTTTAACGGGTTAT-GTGTTTTCGAGAGTGAAAA    343
                     ||..|.||.|||||..|..|.|| .|..|| ||.||..|.|.||||||||
BPUM_3136___l    295 GGGCTGATAGGCGCTGTGCTGAC-AGCAATCGTCTTCACAAAAGTGAAAA    343

BSNT_05326___    344 ACCTTTCGTTCTGGAAGCTTGCGGACATTGCCGCGCCCAGCATTTTGCTC    393
                     ...|.||.||||||||..|.|||||..|.||.||.||.||.|||||.||.
BPUM_3136___l    344 GGGTGTCCTTCTGGAAAATAGCGGATGTAGCAGCACCTAGTATTTTACTA    393

BSNT_05326___    394 GGCCAGGCGATCGGGCGCTGGGGGAACTTCATGAATCAGGAAGCGCACGG    443
                     |..||.||.||.||.||||||||||||||.||.||||||||||||||.||
BPUM_3136___l    394 GCGCAAGCCATTGGACGCTGGGGGAACTTTATTAATCAGGAAGCGCATGG    443

BSNT_05326___    444 CGAGGCTG--TCAGCAGAGCCTTTTTAGAAAACCTGCACCTGCCTGAATT    491
                     .|||||||  |||  ||||||||||||||.||..||||..|||||||.||
BPUM_3136___l    444 TGAGGCTGTTTCA--AGAGCCTTTTTAGAGAATTTGCATTTGCCTGAGTT    491

BSNT_05326___    492 TATCATCAATCAAATGTATATCAATGGGCAATATTATCATCCTACTTTTT    541
                     ||||||.||||||||||||||..|||||...||||||||.||.||.||.|
BPUM_3136___l    492 TATCATTAATCAAATGTATATTGATGGGACGTATTATCACCCAACGTTCT    541

BSNT_05326___    542 TATATGAATCACTATGGAGCTTTGTCGGCG------TCATTG-TTTTATT    584
                     ||||.||||||.||||||...|||.|||.|      || ||| |||||| 
BPUM_3136___l    542 TATACGAATCATTATGGAATCTTGCCGGTGTTGTGATC-TTGATTTTAT-    589

BSNT_05326___    585 GCTGCTGCGCAG---AGCGAATTTGCGTAGAGGCGAGATGTTCTTGATC-    630
                          |.||.||   |.|||   |||||||||||||.||.|||||| || 
BPUM_3136___l    590 -----TACGTAGAACATCGA---TGCGTAGAGGCGAAATCTTCTTG-TCT    630

BSNT_05326___    631 TATATCATTTGGTATTCAATCGGAAGATACTTTATTGAAGGAATGCGGAC    680
                     |||.|.|||||||||||||||||..|.|.|||.||.||.||.|||.|.||
BPUM_3136___l    631 TATTTAATTTGGTATTCAATCGGTCGTTTCTTCATAGAGGGTATGAGAAC    680

BSNT_05326___    681 TGACAGCTTAATGCTGACTGATTCA-CTTCGCATCGCTCAGGTGATTTCA    729
                     .|||||.|||||||||||.|| .|| |||||.||||||||..|||||||.
BPUM_3136___l    681 GGACAGTTTAATGCTGACAGA-ACATCTTCGAATCGCTCAAATGATTTCG    729

BSNT_05326___    730 ATCG-TATTAATTGTTT----TGGCTG--TGGCAGCCATCATCTTCAGAC    772
                     ||.| .|||     |||    ||||||  |.||.|  ||||||||.|||.
BPUM_3136___l    730 ATTGCCATT-----TTTGCAGTGGCTGTTTTGCTG--ATCATCTTTAGAA    772

BSNT_05326___    773 GCGTCAAGGGATAC---TCG---------AAGGAGCGGTAC---GCGGAG    807
                     |..|.||.||.|||   |||         ||.|||....||   .||.|.
BPUM_3136___l    773 GAATAAAAGGGTACGCATCGATTCCGTATAAAGAGAACAACTCATCGAAT    822

BSNT_05326___    808 TAG    810
                     ||.
BPUM_3136___l    823 TAA    825


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05326 and BPUM_3136

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
