Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05325 and BPUM_3135
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_05325___yvoD.1.24716.seq
# -bsequence dna-align/BPUM_3135.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05325___yvoD-BPUM_3135.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05325___yvoD-BPUM_3135.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05325___yvoD
# 2: BPUM_3135
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 671/1003 (66.9%)
# Similarity: 671/1003 (66.9%)
# Gaps: 122/1003 (12.2%)
# Score: 2140.5
#
#
#=======================================
BSNT_05325___ 1 ATGAAGAAGATCTTTC-TGG----CCGGTCTT----GCGGCAGGTCT-TC 40
|||..|.||| | ||| .||| ||| ||| ||.|| ||
BPUM_3135 1 ATGGGGGAGA-----CATGGAAAAACGG-CTTAAAAGCG---GGGCTATC 41
BSNT_05325___ 41 AAACAACATGGACACTCGGTAAAGTGATTTTCCCGGTAACGCTATTGGTC 90
.||.||.||||||||.||.|||||.||.||.|||||.||..|..|.|||
BPUM_3135 42 -GACTACTTGGACACTTGGAAAAGTCATCTTTCCGGTTACCATTCTCGTC 90
BSNT_05325___ 91 ACTTTGCTT-CAGCATACCCCTGTCATGGATTGGCTTG----------TA 129
|.|.| ||| ||||||||.|||||.||||||||| .|| ||
BPUM_3135 91 AGTAT-CTTGCAGCATACGCCTGTTATGGATTGG-ATGATTCAATTCATA 138
BSNT_05325___ 130 CGGC---TGATCACACCGGTAATGAGTCTCTTCGGGCTTTCTGGTGAAGC 176
|||| |||| ||.|.|| ||.||.|||||.||.|||||
BPUM_3135 139 CGGCCATTGAT------GGGATTG------TTTGGTCTTTCAGGGGAAGC 176
BSNT_05325___ 177 GGCCATTCCGCTTGTACTGGGAAATATGCTGAATCTGTATGCGGGAATTG 226
.||.|||||.||||||.|.||||||.|||||||..|||||||.||.||||
BPUM_3135 177 AGCTATTCCTCTTGTATTAGGAAATGTGCTGAACTTGTATGCAGGCATTG 226
BSNT_05325___ 227 CCGGGATTTTAACATTGGATTTATCTGTGAAAGAAGTCTTTATTTTAGCT 276
|||..|||||.|||.|.|||.|..|.|||||.|||||.||.|||||.||.
BPUM_3135 227 CCGCCATTTTGACACTAGATCTTCCCGTGAAGGAAGTGTTCATTTTGGCC 276
BSNT_05325___ 277 GTTATGCTTTCATTCTGTCATAACTTGATTATCGAATCGACAGTTGCCGC 326
||.|||||.||.||.||.||||||.||||.||.|||||||||||.||.||
BPUM_3135 277 GTGATGCTCTCCTTTTGCCATAACCTGATGATTGAATCGACAGTGGCAGC 326
BSNT_05325___ 327 AAAGGTTGGTATCAGAATTGGC-GTCATATTGGCCGTGCGCATCGGTTTG 375
|||||||||..|||| |.||.| |||||.|||...||..|.|||.||.|.
BPUM_3135 327 AAAGGTTGGACTCAG-AGTGTCTGTCATTTTGCTTGTCAGAATCAGTCTC 375
BSNT_05325___ 376 GCCGCTGTGTCAGCCATCGTCATCAACCTCATTTGGCATGGCGGAAAGGA 425
||.|.|||.||.||.||.|||||..|.|||.|||||||.||.||..||||
BPUM_3135 376 GCTGTTGTTTCCGCTATTGTCATTCATCTCGTTTGGCAGGGAGGCCAGGA 425
BSNT_05325___ 426 AACGGCGCAGTACGGTTT--TATCG-CTGCGAAGAGCGCC----GCGCCA 468
..||||.||.||.||.|| ||.|| |.||..||| ||.| |.|||.
BPUM_3135 426 GCCGGCACAATATGGATTGCTAACGACAGCTCAGA-CGGCTGATGTGCCT 474
BSNT_05325___ 469 GACAGCTGG------------CTAGGAATGTTGGCAGAAGCATTAACGAA 506
..||||||| || |||| ||.|||...||
BPUM_3135 475 TCCAGCTGGTACATGATTGTCCT-----TGTT-------GCTTTACAAAA 512
BSNT_05325___ 507 AGCCGGACTTGGTGTTTTGCAGCTGGCGGCAATTGTCATACCGCTGATGA 556
|||||.|||.|||||..|.|||||.||....||||||||.||.||.||||
BPUM_3135 513 AGCCGTACTCGGTGTGCTCCAGCTCGCCTGTATTGTCATCCCTCTTATGA 562
BSNT_05325___ 557 TCATCATCCAGTTTTTAAGAGATTTAGGCTGGCTGCATCGGTTTTCCAGG 606
|||||||.||.||..|.||||||.||||.|||||.|||..|.|.||.|||
BPUM_3135 563 TCATCATTCAATTCATGAGAGATCTAGGATGGCTCCATACGCTATCTAGG 612
BSNT_05325___ 607 TGGCTGTCGCCGTTTACGCAG-CTGCTTGGCATGAATAAAAATACGTCTA 655
||||||||.||.|||||| || .|||||||.|||||..||||||||||.|
BPUM_3135 613 TGGCTGTCTCCATTTACG-AGAATGCTTGGAATGAAAGAAAATACGTCGA 661
BSNT_05325___ 656 TGACGATGGTGGCGGGACTGACGATTAGTCTGGCCTACGGAGCGGGTGTC 705
||||||||||.||.||..|.||.|||.|||||||.|||||.||.||.||.
BPUM_3135 662 TGACGATGGTCGCTGGGTTAACCATTGGTCTGGCATACGGGGCTGGCGTG 711
BSNT_05325___ 706 ATGATCAAAGCTGTCGAGGATGACGGCGTGAGCAAGCGGGATATGACATT 755
|||||.||.||.||.||.||.||.||||||||.||...||||.|.||..|
BPUM_3135 712 ATGATGAAGGCAGTGGAAGAGGATGGCGTGAGTAAAAAGGATTTAACTCT 761
BSNT_05325___ 756 GGCATTTATATTTCTCGTTGCCTGCCACGCGGTCGTGGAAGATACACTTG 805
.||.||.||.||.||.||.|||||.||.||.||.||.||||||||.||..
BPUM_3135 762 TGCTTTCATTTTCCTTGTCGCCTGTCATGCAGTGGTCGAAGATACGCTCA 811
BSNT_05325___ 806 TCTTTATTCCGCTCGGCATACCAGTCTGGCCGCTTCTTTTGATTCGTGTC 855
|.||||||||.||.||.||.||.||.||||||||||||.|.|||||
BPUM_3135 812 TATTTATTCCACTTGGGATCCCTGTGTGGCCGCTTCTTGTCATTCG---- 857
BSNT_05325___ 856 ACC-----ACAGCAGTT-------CTGCTGACAATGGCTATTGCGCACAC 893
|| .|.|||.|| |.||||..|.|.||||| |.
BPUM_3135 858 -CCTAGTATCTGCAATTTTATTAACAGCTGTTATTAGCTAT-------AT 899
BSNT_05325___ 894 GTGGAAAAAATGGAAACC-----CT--CAGCGGTTGGAAAGGAAGCAATA 936
.||| .||||.| || ||||.|||.||||||||||.|||
BPUM_3135 900 TTGG-------CGAAAGCGCGAGCTTGCAGCTGTTAGAAAGGAAGCCATA 942
BSNT_05325___ 937 TGA 939
|||
BPUM_3135 943 TGA 945
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