Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05324 and BPUM_3134

See Amino acid alignment / Visit BSNT_05324 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_05324___ppaX.1.24716.seq
#    -bsequence dna-align/BPUM_3134.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05324___ppaX-BPUM_3134.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05324___ppaX-BPUM_3134.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05324___ppaX
# 2: BPUM_3134
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity:     455/704 (64.6%)
# Similarity:   455/704 (64.6%)
# Gaps:         106/704 (15.1%)
# Score: 1396.0
# 
#
#=======================================

BSNT_05324___      1 ATGAGTGACA--AACAAGTAACGACGATTCTGTTTGATTTAGACGGAACG     48
                     ||||..|| |  |||.|.|||| ||..|.||.|||||||||||.||.||.
BPUM_3134          1 ATGAACGA-ATCAACTATTAAC-ACCGTGCTATTTGATTTAGATGGCACA     48

BSNT_05324___     49 CTTATTAATACGAATGAATTAATTATCGCGTCCTTTTTGCATACACTGGA     98
                     .|.||.||||||||||||||||||||.||.||.|||...|||||.||.||
BPUM_3134         49 TTAATCAATACGAATGAATTAATTATTGCTTCATTTCAACATACGCTTGA     98

BSNT_05324___     99 GCATTATTATCCGAGCAAGTATAAACGAGAAGATGTCCTTGCGTTTATCG    148
                     .||||||||.||..|..||||.|..||.|||||..|.|||...|||||.|
BPUM_3134         99 TCATTATTACCCTGGTCAGTACAGCCGTGAAGAGATTCTTCATTTTATTG    148

BSNT_05324___    149 GGCCGTCTCTTTTTGAAACGTTCTCTTCGATGGACCCTGAT-AAATGCGA    197
                     |.||.||..|.|||||.||.||||||.|||||||||||||| .||.| ||
BPUM_3134        149 GTCCATCATTATTTGATACATTCTCTGCGATGGACCCTGATCTAACG-GA    197

BSNT_05324___    198 GGATATGATCGCTATGTACAGAGCGTAC----AATCATG-ACATGCATGA    242
                     .||.|||||....||||||    |||||    ||||||| ||| ||||||
BPUM_3134        198 TGACATGATTCAGATGTAC----CGTACATTTAATCATGAACA-GCATGA    242

BSNT_05324___    243 TTCACTCGTGACTGAATATGAAACGGTATATGAGACCCTGGATGCATTAA    292
                     |...||.||||||||||||||.||.||.|         |.|||.||||  
BPUM_3134        243 TCTGCTTGTGACTGAATATGAGACTGTTT---------TAGATACATT--    281

BSNT_05324___    293 AAAAAGCC------------GGCTTTACATTAGGAATTGTGACAACAAAA    330
                      .||||.|            ||.||||...|.||.|||||.||||||||.
BPUM_3134        282 -GAAAGTCTTGCAGGATCGAGGATTTAAGCTTGGTATTGTCACAACAAAG    330

BSNT_05324___    331 TTAAGAGATAC--TGTCAATATGGGCCTCAAGCTCACGGGAATCG-GCGA    377
                     .||.|.||.||  |||.|  |||||..|.|||||.||.||..|.| || .
BPUM_3134        331 ATACGTGACACAGTGTTA--ATGGGATTGAAGCTGACCGGTTTAGAGC-C    377

BSNT_05324___    378 ATTCTTTGAAACAG----TTGTCACCCTTGATGATGTGACAAATGCAAAG    423
                     ||||||||    ||    ||||.||.||.||||||||...|||||.||||
BPUM_3134        378 ATTCTTTG----AGGTGATTGTGACGCTCGATGATGTCCAAAATGAAAAG    423

BSNT_05324___    424 CCTGATCCCGAGCCTGT---GCTG---TTAGCGCTGAAAC-AGTTAGGAA    466
                     ||..||||.|||||.||   .|||   |||.|       | ||.|.||.|
BPUM_3134        424 CCGCATCCTGAGCCAGTTCAACTGGCATTATC-------CAAGCTTGGCA    466

BSNT_05324___    467 GCAAGCCCGAGGAAGCCATTATGGTCGGAGATAATTACCACGATGTGCTG    516
                     ||.|.||..|.|||||..|.||||||||.||.|||||.||||||.|.|||
BPUM_3134        467 GCGATCCACATGAAGCGGTGATGGTCGGTGACAATTATCACGATATTCTG    516

BSNT_05324___    517 GCAGGCAAAAACGCCGGTACAAAAACGGCAGGAGTCGCATGGACGATTAA    566
                     .|.||..||...||.||.||||||||.|||||.||.||.|||.|||||||
BPUM_3134        517 TCTGGTCAAGCGGCAGGGACAAAAACAGCAGGTGTTGCTTGGTCGATTAA    566

BSNT_05324___    567 AGG-------GCCGGAAATGCTGGCGAAGCATGAGCCGGATTTTATGCTT    609
                     .||       |||       ||....||||||...||.|||||||||.|.
BPUM_3134        567 GGGAGAAGAAGCC-------CTTTTCAAGCATCGCCCTGATTTTATGTTA    609

BSNT_05324___    610 GAGAAAATGAGTGATCT-------ATTACAAATCGTTGGAG-----TGAA    647
                     .||||||||||||||||       |||       |||||||     ||| 
BPUM_3134        610 AAGAAAATGAGTGATCTCCTGGCGATT-------GTTGGAGCTGATTGA-    651

BSNT_05324___    648 GTAA    651
                         
BPUM_3134        651 ----    651


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