Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05324 and BPUM_3134
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_05324___ppaX.1.24716.seq
# -bsequence dna-align/BPUM_3134.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05324___ppaX-BPUM_3134.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05324___ppaX-BPUM_3134.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05324___ppaX
# 2: BPUM_3134
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity: 455/704 (64.6%)
# Similarity: 455/704 (64.6%)
# Gaps: 106/704 (15.1%)
# Score: 1396.0
#
#
#=======================================
BSNT_05324___ 1 ATGAGTGACA--AACAAGTAACGACGATTCTGTTTGATTTAGACGGAACG 48
||||..|| | |||.|.|||| ||..|.||.|||||||||||.||.||.
BPUM_3134 1 ATGAACGA-ATCAACTATTAAC-ACCGTGCTATTTGATTTAGATGGCACA 48
BSNT_05324___ 49 CTTATTAATACGAATGAATTAATTATCGCGTCCTTTTTGCATACACTGGA 98
.|.||.||||||||||||||||||||.||.||.|||...|||||.||.||
BPUM_3134 49 TTAATCAATACGAATGAATTAATTATTGCTTCATTTCAACATACGCTTGA 98
BSNT_05324___ 99 GCATTATTATCCGAGCAAGTATAAACGAGAAGATGTCCTTGCGTTTATCG 148
.||||||||.||..|..||||.|..||.|||||..|.|||...|||||.|
BPUM_3134 99 TCATTATTACCCTGGTCAGTACAGCCGTGAAGAGATTCTTCATTTTATTG 148
BSNT_05324___ 149 GGCCGTCTCTTTTTGAAACGTTCTCTTCGATGGACCCTGAT-AAATGCGA 197
|.||.||..|.|||||.||.||||||.|||||||||||||| .||.| ||
BPUM_3134 149 GTCCATCATTATTTGATACATTCTCTGCGATGGACCCTGATCTAACG-GA 197
BSNT_05324___ 198 GGATATGATCGCTATGTACAGAGCGTAC----AATCATG-ACATGCATGA 242
.||.|||||....|||||| ||||| ||||||| ||| ||||||
BPUM_3134 198 TGACATGATTCAGATGTAC----CGTACATTTAATCATGAACA-GCATGA 242
BSNT_05324___ 243 TTCACTCGTGACTGAATATGAAACGGTATATGAGACCCTGGATGCATTAA 292
|...||.||||||||||||||.||.||.| |.|||.||||
BPUM_3134 243 TCTGCTTGTGACTGAATATGAGACTGTTT---------TAGATACATT-- 281
BSNT_05324___ 293 AAAAAGCC------------GGCTTTACATTAGGAATTGTGACAACAAAA 330
.||||.| ||.||||...|.||.|||||.||||||||.
BPUM_3134 282 -GAAAGTCTTGCAGGATCGAGGATTTAAGCTTGGTATTGTCACAACAAAG 330
BSNT_05324___ 331 TTAAGAGATAC--TGTCAATATGGGCCTCAAGCTCACGGGAATCG-GCGA 377
.||.|.||.|| |||.| |||||..|.|||||.||.||..|.| || .
BPUM_3134 331 ATACGTGACACAGTGTTA--ATGGGATTGAAGCTGACCGGTTTAGAGC-C 377
BSNT_05324___ 378 ATTCTTTGAAACAG----TTGTCACCCTTGATGATGTGACAAATGCAAAG 423
|||||||| || ||||.||.||.||||||||...|||||.||||
BPUM_3134 378 ATTCTTTG----AGGTGATTGTGACGCTCGATGATGTCCAAAATGAAAAG 423
BSNT_05324___ 424 CCTGATCCCGAGCCTGT---GCTG---TTAGCGCTGAAAC-AGTTAGGAA 466
||..||||.|||||.|| .||| |||.| | ||.|.||.|
BPUM_3134 424 CCGCATCCTGAGCCAGTTCAACTGGCATTATC-------CAAGCTTGGCA 466
BSNT_05324___ 467 GCAAGCCCGAGGAAGCCATTATGGTCGGAGATAATTACCACGATGTGCTG 516
||.|.||..|.|||||..|.||||||||.||.|||||.||||||.|.|||
BPUM_3134 467 GCGATCCACATGAAGCGGTGATGGTCGGTGACAATTATCACGATATTCTG 516
BSNT_05324___ 517 GCAGGCAAAAACGCCGGTACAAAAACGGCAGGAGTCGCATGGACGATTAA 566
.|.||..||...||.||.||||||||.|||||.||.||.|||.|||||||
BPUM_3134 517 TCTGGTCAAGCGGCAGGGACAAAAACAGCAGGTGTTGCTTGGTCGATTAA 566
BSNT_05324___ 567 AGG-------GCCGGAAATGCTGGCGAAGCATGAGCCGGATTTTATGCTT 609
.|| ||| ||....||||||...||.|||||||||.|.
BPUM_3134 567 GGGAGAAGAAGCC-------CTTTTCAAGCATCGCCCTGATTTTATGTTA 609
BSNT_05324___ 610 GAGAAAATGAGTGATCT-------ATTACAAATCGTTGGAG-----TGAA 647
.|||||||||||||||| ||| ||||||| |||
BPUM_3134 610 AAGAAAATGAGTGATCTCCTGGCGATT-------GTTGGAGCTGATTGA- 651
BSNT_05324___ 648 GTAA 651
BPUM_3134 651 ---- 651
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