Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05313 and BPUM_3127
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05313___hisG.1.24716.seq
# -bsequence dna-align/BPUM_3127___hisG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05313___hisG-BPUM_3127___hisG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05313___hisG-BPUM_3127___hisG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05313___hisG
# 2: BPUM_3127___hisG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity: 483/658 (73.4%)
# Similarity: 483/658 (73.4%)
# Gaps: 50/658 ( 7.6%)
# Score: 1804.0
#
#
#=======================================
BSNT_05313___ 1 ------------------ATGGCGATGCCAAAGGGCCGGATATTTGAAGA 32
||||||||||||||||||||.|||||||||||
BPUM_3127___h 1 ATGGGTAAAGTGTTGACGATGGCGATGCCAAAGGGCCGAATATTTGAAGA 50
BSNT_05313___ 33 AGCGGCAGGGCTGCTGAGGCAGGCAGGCTA-CAGGCTCCCTGAGGAGTTT 81
.||.|||||||||.|.||||||||.||.|| || .||.||.|||||.||.
BPUM_3127___h 51 GGCCGCAGGGCTGTTAAGGCAGGCGGGTTATCA-ACTGCCAGAGGAATTC 99
BSNT_05313___ 82 GAAGATTCGAGAAAACTGATCATCGATGTGCCGGAGGAAAATCTTCGTTT 131
||.|||||.|||||..|.|||||.|||||.|||||.||||..||.||.||
BPUM_3127___h 100 GAGGATTCAAGAAAGTTAATCATTGATGTACCGGAAGAAAGCCTCCGCTT 149
BSNT_05313___ 132 CATATTAGCAAAGCCGATGGACGTAACCACGTATGTGGAGCATGGCGTGG 181
.||.|||||.||.||.|||||.||.||.||.|||||.|||||.||.||.|
BPUM_3127___h 150 TATTTTAGCGAAACCAATGGATGTGACGACTTATGTAGAGCACGGTGTTG 199
BSNT_05313___ 182 CAGACGTCGGAATTGCGGGCAAGGATGTCATGCTGGAGGAGGAACGCGAT 231
|.||.||.||.|||||.||.||||||||||||||.||.||.|..||.|||
BPUM_3127___h 200 CCGATGTGGGCATTGCAGGGAAGGATGTCATGCTCGAAGAAGCTCGTGAT 249
BSNT_05313___ 232 GTGTATGAGGTACTGGATTTAAAAATCAGCAAATGCCACTTAGCTGTCGC 281
|||||.|||||.||.||||||||.|||||.||||||||.|||||.||.||
BPUM_3127___h 250 GTGTACGAGGTGCTTGATTTAAACATCAGTAAATGCCATTTAGCAGTTGC 299
BSNT_05313___ 282 CGGACTTCC-GAATACAGACTGGAGCGGCGTAGCGCCAAGAATCGCGACA 330
.|||.|.|| |.|..||| ||||.|.||.||.|||||..|..|.||.|||
BPUM_3127___h 300 TGGATTGCCAGGAGCCAG-CTGGGGTGGTGTCGCGCCGCGTGTGGCCACA 348
BSNT_05313___ 331 AAGTATCCGAATGTGG---CTTCCAGTTATTTCAGAGAGCAGGGAGAACA 377
|||||.||.|||||.| ||||| |||||.||||||||.||.||.||
BPUM_3127___h 349 AAGTACCCAAATGTCGCATCTTCC---TATTTTAGAGAGCAAGGTGAGCA 395
BSNT_05313___ 378 AGTCGAGATCATTAAGCTCAACGGTTCAATTGAACTGGCTCCGCTCATTG 427
|||.||||||||||||||.||.|||||.||||||.|.||.||||||||.|
BPUM_3127___h 396 AGTAGAGATCATTAAGCTGAATGGTTCCATTGAATTAGCACCGCTCATCG 445
BSNT_05313___ 428 GGCTTGCAGATCGGATAGTGGACATTGTTTCCACAGGACAGACGCTGAAA 477
|.||.||.|||||.||.||.||.|||||.||.|||||.||.||.||.||.
BPUM_3127___h 446 GACTCGCCGATCGTATCGTTGATATTGTCTCTACAGGTCAAACACTTAAG 495
BSNT_05313___ 478 GAAAATGGGCTTGTTGAAACGGAGCACATTTGTGACATTACGTCTCGCTT 527
|||||.||.|||||||||||||||||.|||||||||||||||||.||.||
BPUM_3127___h 496 GAAAACGGTCTTGTTGAAACGGAGCATATTTGTGACATTACGTCACGGTT 545
BSNT_05313___ 528 TATTGTCAACCCGGTAAGCTATCGCATGAAAGACGATGTGATTGACGAAA 577
|||.|||||.||.||.||||||||.|||||.||.|..||||||||.||||
BPUM_3127___h 546 TATAGTCAATCCTGTGAGCTATCGGATGAAGGATGCGGTGATTGATGAAA 595
BSNT_05313___ 578 TGGCATCCCGCCT-------ATCTCTCGTTGTGGAAGGAGAGACGGCAAA 620
||||....||||| ||| .|.|||||.|| |.|||
BPUM_3127___h 596 TGGCGCAGCGCCTTGCAAGAATC-------ATTGAAGGGGA----GGAAA 634
BSNT_05313___ 621 ----ATGA 624
||||
BPUM_3127___h 635 CATCATGA 642
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