Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05311 and BPUM_3126
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05311___hisD.1.24716.seq
# -bsequence dna-align/BPUM_3126___hisD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05311___hisD-BPUM_3126___hisD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05311___hisD-BPUM_3126___hisD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05311___hisD
# 2: BPUM_3126___hisD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 918/1357 (67.6%)
# Similarity: 918/1357 (67.6%)
# Gaps: 140/1357 (10.3%)
# Score: 2906.0
#
#
#=======================================
BSNT_05311___ 1 ATGAAGATCAAAACCATCAGCGGAGCGGA-ACGG-----CTTTCTCTCAA 44
|||||.||||....|||.|..|.||..|| ||.| ||.||.|||||
BPUM_3126___h 1 ATGAACATCACCTACATAAAAGAAGGTGACACAGACACACTCTCACTCAA 50
BSNT_05311___ 45 GCGTTCCATCGATGCTGGAACGGAAGAGCAAAGAAAGACGGTCCGGTCCA 94
.||..|..|.|||.|.||.|||||||||||..|...|.|.||.|.|...|
BPUM_3126___h 51 ACGGACTTTAGATACGGGCACGGAAGAGCAGCGCCTGGCTGTTCAGCGGA 100
BSNT_05311___ 95 TTATTGAAGATGTTAAAGCAAACGGTGATCAGGCGGTTCGCAG----CTA 140
||||..||||.||.|.|..|||.||.|||||.||||| .||| .||
BPUM_3126___h 101 TTATACAAGAAGTGAGAATAAATGGCGATCAAGCGGT--ACAGTCTTTTA 148
BSNT_05311___ 141 CACGGCGAAATTTGA-------CGGCATCGAA-ATAGACAGCCCGCTGGT 182
||..|| ||||||| |.|| |.||| || |||||.||
BPUM_3126___h 149 CAAAGC--AATTTGATGGGGTGCTGC-TTGAAGAT-------CCGCTTGT 188
BSNT_05311___ 183 CACAAAAGAAGAA------------TTTGAGGAGGCATACAC-CTCACTG 219
||||.|.||.||| ||||| || || ||
BPUM_3126___h 189 CACAGAGGAGGAAATGACAAAAGCCTTTGA----------ACGCT---TG 225
BSNT_05311___ 220 GATTCA--CGTCTTCTTCAGGTGATTAGGCA---GGCAATCGAAAATATT 264
||..|| || |..|||||||||| .|| |||.|||...||||||
BPUM_3126___h 226 GACCCAGCCG--TGATTCAGGTGAT---CCAAACGGCTATCCGCAATATT 270
BSNT_05311___ 265 AGGGAATATCACGAAAGACAGCTGCAATCCTCCTGGTTTTATCA-CAGAA 313
.|...|||.||.||..|.|||||...||||||.||||||||||| |||.|
BPUM_3126___h 271 CGCACATACCATGAGCGTCAGCTAACATCCTCTTGGTTTTATCATCAGCA 320
BSNT_05311___ 314 AGGACGGCACAATGCTGGGGCAGAAAGTGACGGCGCTGGATTCCGCCGGT 363
| ||.|||.|.|||||.||.||.||.|||||..||||.|||.|.|..|||
BPUM_3126___h 321 A-GATGGCTCGATGCTTGGACAAAAGGTGACACCGCTTGATGCAGTTGGT 369
BSNT_05311___ 364 GTATATGTGCCGGGGGGAACGGCCGCATATCCTTCATCTGTTTTGATGAA 413
||.|||||.||.||.|||||.||.||.|||||.|||||||||||.|||||
BPUM_3126___h 370 GTGTATGTCCCCGGTGGAACCGCTGCTTATCCATCATCTGTTTTAATGAA 419
BSNT_05311___ 414 TGTGATTCCGGCGCTTGTAGCGGGCGTTGAAAGAATCGTTCTCGTCACGC 463
|||.||||||||||||||.||.||.|||.|..||||.||.||.||.||.|
BPUM_3126___h 420 TGTCATTCCGGCGCTTGTCGCTGGTGTTCAGCGAATTGTCCTTGTGACAC 469
BSNT_05311___ 464 CTCCGGGAAAAGACGGTCTG-CTGTCTCCTGGAGTTTTGGTTGCTGC--A 510
|.||.||.||||||||| || ||.|||..||..||..|.|||||||| |
BPUM_3126___h 470 CACCAGGGAAAGACGGT-TGCCTATCTGATGCTGTACTCGTTGCTGCGAA 518
BSNT_05311___ 511 GCCGAGCTGGGCATAAAAGACATTTACAAAATGGGCGGCGCTCAGGCGAT 560
| |||||.||.||....||.||.||.|||||||||||.||.||||||||
BPUM_3126___h 519 G--GAGCTCGGTATTTCTGAGATGTATAAAATGGGCGGTGCACAGGCGAT 566
BSNT_05311___ 561 TGCGGCGTTAGCATACGGAACAGAAACCATTGAACCGGTGGATAAAATCA 610
||||.|..|.||.||.|||||||||||||||.|.||.||.||||||||.|
BPUM_3126___h 567 TGCGACACTTGCCTATGGAACAGAAACCATTCAGCCTGTTGATAAAATTA 616
BSNT_05311___ 611 CGGGTCCGGGCAACATTTATGTCGCACTTGCCAAACGGGAAGTGTTCGGC 660
|.|||||.||||||||.|||||||||||.||.||.||||||||.||.||.
BPUM_3126___h 617 CTGGTCCAGGCAACATCTATGTCGCACTGGCAAAGCGGGAAGTATTTGGT 666
BSNT_05311___ 661 GATGTCGATATCGATATGATTGCCGGACCTAGTGAAATCGTCGTGCTGGC 710
.|.|||||.||.|||||||||||.||.||.||||||||.|..||.||.||
BPUM_3126___h 667 CAGGTCGACATTGATATGATTGCGGGTCCAAGTGAAATTGCGGTTCTAGC 716
BSNT_05311___ 711 TGATGAAACAGCGATTCCGAGC----GAAATTGCAGCCGATCTGCTGTCA 756
.||.||.||.||.|| ||| ||..|.||.||.|||.|.||.||.
BPUM_3126___h 717 AGACGACACGGCTAT----AGCTCATGAGGTGGCGGCTGATTTACTTTCT 762
BSNT_05311___ 757 CAGGCGGAACACGATAAGCTCAGCTCAT---GTGTGTTTGTCACAGATTC 803
|||||.||.||.|||..||| .|||| ||.|.||.||||| |
BPUM_3126___h 763 CAGGCAGAGCATGATGCGCT---GTCATCTAGTATTTTGGTCAC-----C 804
BSNT_05311___ 804 CATGGCG---------CTGGCCGAGGCGGTTTCAGCCGAGGTG--AGTAA 842
| || ||.||.||....||...|||.|||||| || .
BPUM_3126___h 805 C----CGTCTCAAACACTTGCGGAAAACGTGCAAGCTGAGGTGCAAG--C 848
BSNT_05311___ 843 GCAGCTGAAAACCTTGCCGCGAAGAGAAATAGCGGAAGCTTCAGTGAGAG 892
||||||..|.|||||.||..|||.|..|||.||.|.|...||..|.|.|.
BPUM_3126___h 849 GCAGCTAGACACCTTACCAAGAAAATCAATCGCTGCACAATCTATAAAAC 898
BSNT_05311___ 893 ATTACGGTTGTATATATGTGGCGGAAACAATGGTGGAAGCGATTAATA-- 940
||.|.||..|||||||||||.||||..|.|||| |.||...|.||
BPUM_3126___h 899 ATCATGGCCGTATATATGTGACGGATTCCATGG----ATCGTGCAGTAGA 944
BSNT_05311___ 941 ---CTGTCAATACA-CTCGCGCCAGAGCATTTAGAAATCATAACACAGTC 986
| |||||| || .|.|||||||||||||||||..|..|.|||...|.
BPUM_3126___h 945 CGTC-GTCAAT-CAGTTAGCGCCAGAGCATTTAGAGGTGCTGACAGCCTA 992
BSNT_05311___ 987 TCCGGAAGCTTTGCTTGGCAGTATCAAA-----CATGCGGGTGCAATTTT 1031
|||.|||.|.||.||||| ||||| |||||.||.||.|||||
BPUM_3126___h 993 TCCAGAATCATTTCTTGG-----TCAAATTAAGCATGCAGGGGCGATTTT 1037
BSNT_05311___ 1032 CTTAGGCAGATACAGCCCTGAGCCTGTCGGTGATTATTTTGCCGGACCGA 1081
.|||||..|.||.|||||||||||.||.||.|||||||||||.|||||.|
BPUM_3126___h 1038 TTTAGGGCGTTATAGCCCTGAGCCGGTGGGAGATTATTTTGCAGGACCAA 1087
BSNT_05311___ 1082 ACCATGTGCTTCCGACAAACGGAACAGCCAGATTTTCAAGTCCATTAAAC 1131
|.||.|||||.||.||.|||||||||||.||||||||.||.|||.|....
BPUM_3126___h 1088 ATCACGTGCTGCCAACCAACGGAACAGCTAGATTTTCTAGCCCACTCGGT 1137
BSNT_05311___ 1132 GTAACTGATTTTCAAAAGAAATCGAGCATTATTTCTTACAGTCAATCAGC 1181
||.||.|||||||||||||||.|||||||||||||.||.||||||..|||
BPUM_3126___h 1138 GTGACCGATTTTCAAAAGAAAACGAGCATTATTTCATATAGTCAAGAAGC 1187
BSNT_05311___ 1182 CTTTGAAGA-ACATGCTGAAAGCATCGCGGCTTTTGCCAGACTGGAAGGG 1230
||||| ||| ||||...||.|||||.|||||||||||||||.|.||||||
BPUM_3126___h 1188 CTTTG-AGACACATAGGGATAGCATTGCGGCTTTTGCCAGATTAGAAGGG 1236
BSNT_05311___ 1231 TTAGAAGCCCATGCCAGATCAATTGAAGCGAGAGAAC-GGAGGATT--TC 1277
.|.|||||.|||||.||.||.||||||.|||||.|.| ||||||.| ||
BPUM_3126___h 1237 CTCGAAGCGCATGCAAGGTCGATTGAATCGAGAAAGCGGGAGGAATCGTC 1286
BSNT_05311___ 1278 TAAATGA 1284
||||
BPUM_3126___h 1287 ---ATGA 1290
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