Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05308 and BPUM_3124
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05308___hisH.1.24716.seq
# -bsequence dna-align/BPUM_3124___hisH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05308___hisH-BPUM_3124___hisH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05308___hisH-BPUM_3124___hisH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05308___hisH
# 2: BPUM_3124___hisH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 445/699 (63.7%)
# Similarity: 445/699 (63.7%)
# Gaps: 120/699 (17.2%)
# Score: 1344.0
#
#
#=======================================
BSNT_05308___ 1 ATGATCGGCGTGATAGATTACGGAATGGGGAATTTATACAGTGTCTCAAA 50
|||||||||||.||.||||||||||||||.|||||.|.|||.||.|||||
BPUM_3124___h 1 ATGATCGGCGTCATTGATTACGGAATGGGAAATTTGTTCAGCGTATCAAA 50
BSNT_05308___ 51 GGCGCTTGAACGTGTCGGCGTGCC--GTATTTTGTTTCTGAAAAGCCGGA 98
.||.||.|||||.|..| ||||| .|||.|.||.||.|...|...|||
BPUM_3124___h 51 AGCACTGGAACGAGCAG--GTGCCCGTTATATCGTCTCCGCTGATGTGGA 98
BSNT_05308___ 99 GGAGCTGAAAGAAGCTGATGCCTTCATTTTGCCGGGAGTCGGTTCATTTG 148
||||||.|||.|.||.|||||.|..||||||||.||.||||||||.|||.
BPUM_3124___h 99 GGAGCTCAAAAAGGCAGATGCTTATATTTTGCCTGGGGTCGGTTCGTTTC 148
BSNT_05308___ 149 GAGACGCGATGGACAATTTGCGCT----------ACACGAAGCTTGATCA 188
|.||.||||||.| ||| |||.|| |||||...
BPUM_3124___h 149 GTGATGCGATGCA--------GCTGTTAAAACAGACAGGA--CTTGAGGG 188
BSNT_05308___ 189 ATTGATTCACGATATGGTCTCA-GAGGGAAGGCTGCTTCTAGGGATCTGC 237
|||.||..||.|..|.|| .|| ||.||||.||||||..|.||.||.|||
BPUM_3124___h 189 ATTTATCTACCAAGTTGT-GCAGGAAGGAAAGCTGCTATTCGGCATTTGC 237
BSNT_05308___ 238 CTCGGCATGCAGCTTTTATTTGAAGAAAGCGAAGAAAACGGCACCGCTTC 287
||.||.||||||||.||||||||||||||.||||| || |
BPUM_3124___h 238 CTTGGGATGCAGCTGTTATTTGAAGAAAGTGAAGA----GG--------C 275
BSNT_05308___ 288 AGGAC------------TCGGGCTGTTAAAAGG---------------AA 310
||||| |.||.|||.||||||| ||
BPUM_3124___h 276 AGGACGTACGAAAGGGTTGGGACTGCTAAAAGGGCGTGTCGTTCTTTTAA 325
BSNT_05308___ 311 AAGCAGTCAGGCTGA-AAGCAGAAGATGAAAAAGGAAACAAGCTGAAGGT 359
||| .||| ||| ||| |||| ||.|| |||||||||||
BPUM_3124___h 326 AAG--ATCA---TGACAAG-----GATG-----GGCAA-AAGCTGAAGGT 359
BSNT_05308___ 360 TCCGCATATGGGCTGGAATCGTCTTTCCTTTCATAA--CGAATCTCCGC- 406
.||.||||||||.||||||...||..|.||||||.| | ||||.|
BPUM_3124___h 360 GCCTCATATGGGGTGGAATGAGCTCACATTTCATCAGCC----CTCCCCA 405
BSNT_05308___ 407 -TG-CTGACTAA--AACAGAACAAGGCTACGCTTACTTCGTTCATTCCTA 452
|| .||||..| |.||| ||||.|..||.|||||.|||||.||.||
BPUM_3124___h 406 TTGTTTGACGGAGTACCAG---AAGGATTTGCGTACTTTGTTCACTCTTA 452
BSNT_05308___ 453 TTACAT-TGACGGGAT--------GGAGGAGGACTCGCTCCTGGCAAGCA 493
|| || ||| ||||| .||.|||.|.| |.||||||.
BPUM_3124___h 453 TT--ATGTGA-GGGATATGAATCCAGAAGAGCAAT------TAGCAAGCG 493
BSNT_05308___ 494 CCGATTATGGTGTGCGAGTGCCTGCTGTAGTCGGAAAAAGAAACGTCTTC 543
|.||.|||||.||.|.||||||.||..|.|||||.||..||||.||..|.
BPUM_3124___h 494 CAGACTATGGCGTTCAAGTGCCAGCAATTGTCGGTAAGGGAAATGTGCTA 543
BSNT_05308___ 544 GGCGCCCAATTTCATCCGGAAAAAAGCAGCACGGTCGGAATGTCTATTTT 593
|||||.||.|||||.||.|||||||||||.||....||.|||.|..|..|
BPUM_3124___h 544 GGCGCACAGTTTCACCCTGAAAAAAGCAGTACAACGGGCATGGCGCTGCT 593
BSNT_05308___ 594 AACCCAATTTACGAAAATGGCAGCAA---AACAGAAGGTGAAAAAATGA 639
.|..|||||||...||.| ||||| ||||||.||||||.||||||
BPUM_3124___h 594 CAAACAATTTATTCAACT---AGCAAACGAACAGAGGGTGAACAAATGA 639
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