Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05306 and BPUM_3122

See Amino acid alignment / Visit BSNT_05306 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05306___hisF.1.24716.seq
#    -bsequence dna-align/BPUM_3122___hisF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05306___hisF-BPUM_3122___hisF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05306___hisF-BPUM_3122___hisF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05306___hisF
# 2: BPUM_3122___hisF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity:     574/780 (73.6%)
# Similarity:   574/780 (73.6%)
# Gaps:          42/780 ( 5.4%)
# Score: 2060.0
# 
#
#=======================================

BSNT_05306___      1 ATGATCACAAAACGGATTATTCCATGCCTTGATGTCAAAGAAGGACGCGT     50
                     |||||.||||||||.||.||.|||||.||.|||||.||.|||||.||.||
BPUM_3122___h      1 ATGATGACAAAACGAATCATCCCATGTCTCGATGTGAAGGAAGGGCGTGT     50

BSNT_05306___     51 TGTCAAAGGAATTCAATTTCTCGAATTGAAGGATGCAGGTGACCCAGTTG    100
                     .||||||||..|.|||||.||||..||.||||||||.|||||.||.||.|
BPUM_3122___h     51 GGTCAAAGGGGTGCAATTCCTCGGTTTAAAGGATGCTGGTGATCCGGTAG    100

BSNT_05306___    101 AACT--CGCTGAAGTGTACGACCGGGAAGGTGCGGATGAACTTGTTTTTC    148
                     ||.|  |||.||  |.||.||...||||||.|||||||||||.||.||||
BPUM_3122___h    101 AATTAGCGCAGA--TATATGATGAGGAAGGGGCGGATGAACTCGTCTTTC    148

BSNT_05306___    149 TTGATATCTCCGCCTCACATGAAGGACGAAAGACGATGATTGACGTTGTG    198
                     |||||||.||.|||||.||||||||.||.||.||||||.|.||.||.||.
BPUM_3122___h    149 TTGATATTTCTGCCTCTCATGAAGGCCGGAAAACGATGGTGGATGTGGTC    198

BSNT_05306___    199 GAGCAGGTTGCCGCGAAGCTTGCGATTCCGTTTACAGTCGGCGGCGGCAT    248
                     .||||.||.||..|.|..|||||.||.||.|||||.||.|||||.||.||
BPUM_3122___h    199 AAGCAAGTGGCGTCCACTCTTGCCATCCCTTTTACGGTAGGCGGTGGAAT    248

BSNT_05306___    249 CAATCAGCTCAGCGATATGAAAACG-ATACTGCGTGCCGGAGCGGACAAA    297
                     .||.||.||....|||||| ||.|| |||.|..|.||.||.||.||||||
BPUM_3122___h    249 TAACCACCTTGATGATATG-AAGCGCATATTAAGAGCGGGTGCAGACAAA    297

BSNT_05306___    298 GTGTCGGTGAACACGGCAGCTGTTCTTCGCCCCGAGCTGATTACAGAAGG    347
                     ||.||.||||||||.||.||.|||.|..|.||.||..|||||.|||||||
BPUM_3122___h    298 GTATCTGTGAACACAGCGGCAGTTTTAAGACCAGAATTGATTTCAGAAGG    347

BSNT_05306___    348 AGCCGAGTTTTTCGGTTCGCAATGCATCGTTCTTGCCATTGATGCCAAGT    397
                     .|||||.|||||.|||||.||.||||||||..|.||.||.|||||.||.|
BPUM_3122___h    348 TGCCGATTTTTTTGGTTCCCAGTGCATCGTCGTCGCAATAGATGCAAAAT    397

BSNT_05306___    398 A---TGACAAAGAATCTGACA--CATATAAGGTCTATACGCACGG-----    437
                     |   ||| |.||||    |.|  |.||.|.|||.|||||.|||||     
BPUM_3122___h    398 ACGTTGA-AGAGAA----AAAAGCGTACATGGTTTATACACACGGAGGGC    442

BSNT_05306___    438 --CGGCAGAAAGAAAACAGATTGGGAGGTCACCGCGTGGGCAAAAGAAGG    485
                       ||.|       ||||.|||...|||||.|.||..|||||||||||||.
BPUM_3122___h    443 GTCGTC-------AAACGGATATAGAGGTAAGCGATTGGGCAAAAGAAGC    485

BSNT_05306___    486 CGTCAAACGC-----GGGGCGGGAGAAATATTGCTGACAAGCATGGACTC    530
                     |||     ||     |||||.|||||.||.|||||.|||||.|||||..|
BPUM_3122___h    486 CGT-----GCTGAGGGGGGCAGGAGAGATCTTGCTCACAAGTATGGATGC    530

BSNT_05306___    531 TGACGGTGAGAAAAAAGGCTTCGACCACACG-CTGACAAAGCTTGTTTCC    579
                     .||||||||||||||.|||||.||.|| .|| .|.|||||||||||.||.
BPUM_3122___h    531 CGACGGTGAGAAAAAGGGCTTTGATCA-TCGATTAACAAAGCTTGTGTCA    579

BSNT_05306___    580 GAAACTGTCCCCGTCCCTGTTATCGCTTCGGGAGGCGCGGGAAACGCGCA    629
                     |||.|||||.|.||.|||||.||.|||||.||||||||.||.||.||.||
BPUM_3122___h    580 GAAGCTGTCACTGTGCCTGTCATTGCTTCAGGAGGCGCTGGCAATGCTCA    629

BSNT_05306___    630 GCATATGCTTGAGGCTTTTACAAAAGGAGAAGCCGACGCTGCGCTGGCCG    679
                     |||||||||.|||||.|||||||||||||||||.||.||.||..|.||.|
BPUM_3122___h    630 GCATATGCTGGAGGCATTTACAAAAGGAGAAGCGGATGCAGCTTTAGCAG    679

BSNT_05306___    680 CCTCAATTTTTCATTATAAAGAAACATCGATTAAAGAAGTGAAATCATAC    729
                     ||||.|||||||||||||||||.||.||.|||.||||.||.||..|||||
BPUM_3122___h    680 CCTCCATTTTTCATTATAAAGAGACTTCAATTCAAGAGGTAAAGACATAC    729

BSNT_05306___    730 TTGAAAGAGTACGGGGTGAATGTGAGATGA    759
                     ||||||||..||||||||||.||.||||||
BPUM_3122___h    730 TTGAAAGAACACGGGGTGAAGGTCAGATGA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05306 and BPUM_3122

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
