Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05299 and BPUM_3120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05299___yvcD.1.24716.seq
# -bsequence dna-align/BPUM_3120.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05299___yvcD-BPUM_3120.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05299___yvcD-BPUM_3120.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05299___yvcD
# 2: BPUM_3120
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1610
# Identity: 973/1610 (60.4%)
# Similarity: 973/1610 (60.4%)
# Gaps: 307/1610 (19.1%)
# Score: 2679.0
#
#
#=======================================
BSNT_05299___ 1 GTGGGAAAACACACTTCTGAACATAAAAATCACGCACAAATTGTCCAGCT 50
|||.|.|||.|||||||| ||.||.||||||.|||||.|.||||||||
BPUM_3120 1 GTGAGTAAATACACTTCT---CAAAATAATCACACACAAGTCGTCCAGCT 47
BSNT_05299___ 51 GCTTCAAGATGGACAATATTTTTTTCATAAAGGCTTGAAAGCGTATAAAG 100
..|.||||||||.||.||.||||||||||||||..|.|||||.||||.||
BPUM_3120 48 ATTCCAAGATGGGCATTACTTTTTTCATAAAGGTCTAAAAGCTTATAGAG 97
BSNT_05299___ 101 AGCGCAATCTAAAACGGGCAAGCAAACTGATTCAGCGCGCG---GTTCAT 147
|..|.||||||....|.|||||.||.||.||.|||||.||| ||.|
BPUM_3120 98 AAAGAAATCTATCTAGAGCAAGTAAGCTAATACAGCGGGCGATCGTAC-- 145
BSNT_05299___ 148 TTGGAGCCGGAGGATTCAGAGATGCTTTCACAGCTTGCGGTCATTTATTC 197
|.|||||.||..||..|||.|||||.||||||||.||..|.||||||.|
BPUM_3120 146 -TTGAGCCTGAAAATGTAGAAATGCTGTCACAGCTAGCTATTATTTATAC 194
BSNT_05299___ 198 GGAAATGGGCCAGTATCAAGAGTCGAACGATCTTCTTGACTATATCATGG 247
.||||||||.||.||.|||.|.||.||.||.||.|||||.|..|||.|.|
BPUM_3120 195 TGAAATGGGTCATTACCAACAATCAAATGAACTGCTTGATTTCATCCTTG 244
BSNT_05299___ 248 CAAATCTGGAGGCCGAAATGCCGGAGTGCCATTACTTTAAAGCGAATAAC 297
...||.|.||.|...|.|||.|.|||||.|||||.||||||||.|||||.
BPUM_3120 245 AGCATATTGATGAAAATATGTCTGAGTGTCATTATTTTAAAGCCAATAAT 294
BSNT_05299___ 298 TTTGCCCATCTGGGGCTCTTCCAGGAAGCTTATAAAGAAGCGGCCGCTTA 347
|.|||..||||.||.|||||.||.||.||.|||||...||||.|.|||||
BPUM_3120 295 TATGCGAATCTAGGACTCTTTCAAGAGGCATATAAGTCAGCGACTGCTTA 344
BSNT_05299___ 348 TTCT------GATGCGGACCCGGATGGTGAATTCGCCGAAGAAAACGATA 391
|.|| ||.|.|.|| ||.|||||.||.||.|||||.|||.
BPUM_3120 345 TGCTTCATTAGAAGAGAAC------GGGGAATTTGCAGATGAAAATGATG 388
BSNT_05299___ 392 GTCTGCTTGATTTGCTCGATTTAGGAGACGACGGCATTGAGGA------- 434
..||.||.|||.||||||||.|..|.||||| .|||||
BPUM_3120 389 ACCTTCTCGATCTGCTCGATATGAGTGACGA------AGAGGACGAAGAT 432
BSNT_05299___ 435 TTCGTTGTATGATCAGGATGAACTGCTGGTGAAACAGGATCGGGCAAAGT 484
|||..| ||.||||||||.||.|||.|.|||||.|||||||..||||| |
BPUM_3120 433 TTCCCT-TACGATCAGGACGACCTGATTGTGAAGCAGGATCAAGCAAA-T 480
BSNT_05299___ 485 CA-TTGCTGGAAAGCGGCCAGCTTGCTGAAGCGGTTGCGGCGCTTGAGGA 533
|| |||||.|||||||||..|||||.||||||..|||.|..|||.||
BPUM_3120 481 CACTTGCTAGAAAGCGGCAGGCTTGATGAAGCCATTGAGATGCTGGA--- 527
BSNT_05299___ 534 AATCACAGCT-------GAATATCCGGAGCTTTGGTCAGCATACAACAAT 576
||||.| ||.|||||.||..||||||||||.||.||.|||
BPUM_3120 528 ----ACAGATGATTGTCGAGTATCCAGAATTTTGGTCAGCGTATAATAAT 573
BSNT_05299___ 577 CTCGCGCTTGCCTATTTCTATTCAGGAAACGTTGTAAAA--------GCG 618
|||||..|.||||||||.||||| |.||.||| |||
BPUM_3120 574 CTCGCATTGGCCTATTTTTATTC--------TGGTCAAATCCATCAGGCG 615
BSNT_05299___ 619 AAGCAAACCGCTTATGAAGTGCTTTCT-CAT---AATGAAGGAAATCTTC 664
|||..|.|..||||..|..|||| ||| |||...||.|||||.|
BPUM_3120 616 ----AAAGAGATGTTGAACCGGGTTCTACATGAAAATCCGGGTAATCTGC 661
BSNT_05299___ 665 ACGC-CTTATGCAATCTTCTCGTTTTCTACTATTATGAAAGAGAAGACGA 713
|.|| ||| |||||.|..||.||.|||||..|||||||||.||||||.||
BPUM_3120 662 ATGCACTT-TGCAACCAGCTAGTCTTCTATCATTATGAAAAAGAAGAAGA 710
BSNT_05299___ 714 AAAAGTGGCGGAAT---TGAGTGATCAGCTCTCCAAT--------GTCTA 752
|||.|| .||| |.||..| || |||| ||.||
BPUM_3120 711 AAAGGT----CAATACGTTAGCAA--AG-----CAATTAACGCACGTGTA 749
BSNT_05299___ 753 TCCGATGCTATTGGAGCAGCGTTATAAATTGGGTGCTACCTTGGCACTTG 802
|||.||..||...||.|||||||||||..|.||.||.||.||.||.||.|
BPUM_3120 750 TCCAATATTAAGTGAACAGCGTTATAAGCTTGGCGCAACATTTGCCCTAG 799
BSNT_05299___ 803 TCGGCCGCTACGAG-------ATCGG-ATATAAATGGCTCAAATCATTAT 844
|.| ||| ||.|| .|.|||||||||..|.||.||.|
BPUM_3120 800 TTG--------GAGAATTTGAATGGGCTTTTAAATGGCTTTATTCTTTGT 841
BSNT_05299___ 845 ATAAAATCGGCTTTGAAGGTGACGACACCTTCTTTTACTGGCTTTCATGC 894
||||||..||||||.|||||||....||.||..|.||||||||..||.||
BPUM_3120 842 ATAAAACAGGCTTTCAAGGTGATAGTACATTTCTATACTGGCTCGCAAGC 891
BSNT_05299___ 895 TCTGCTTATTTTACGGG--ACATACCGACTTTGCCGAGACGATCTGGAGA 942
.|.|||||||.|||.|| |||.|.|| .||||..|||||.|.||| ||
BPUM_3120 892 GCAGCTTATTATACAGGTCACAAAACG--CTTGCACAGACGGTTTGG-GA 938
BSNT_05299___ 943 AAAGTCGAGTCGCA----ATATC----CCGGCGAAGACCGCCCGGCGC-- 982
.|||..| ||||.| ||||| |.|..|||..|...|||..||
BPUM_3120 939 TAAGATG-GTCGAAGAAGATATCGATGCAGATGAAATCAAGCCGTGGCAG 987
BSNT_05299___ 983 ------CTTG----GATTGAGCGGAGGGAAGCTCTTCCTTCATCTGTGGA 1022
|.|| ||.|||||.||.|| .||||.| ||.||
BPUM_3120 988 GATAAACCTGAGGAGACTGAGCCGATGG-----TTTCCAT----TGAGG- 1027
BSNT_05299___ 1023 ACAGCGTCTCGCAGCCTATTATATCAGCAGCAC-AAAGGGAGAAACAGAG 1071
||||.||..|.||.||.|||.|.|||| .|| |||.||||||...||.
BPUM_3120 1028 --AGCGGCTGACGGCGTACTATGTAAGCA-AACAAAAAGGAGAACGTGAC 1074
BSNT_05299___ 1072 CATCTTGAAGCGG----TGAT--ACGCTCAAAGAGAATAACCGCTCCTTT 1115
..||||.||.|.| |||| ||||.||..||.||.|.|| ||
BPUM_3120 1075 GTTCTTCAATCTGTCCTTGATGCACGCGCAGCGAAAACAGCC------TT 1118
BSNT_05299___ 1116 TGA-----AAATCATT---------TTGTA--AAGCTGCTTCTAAATGG- 1148
.|| ||.||||| ||.|| |||.|| ||||||
BPUM_3120 1119 CGAACAGCAATTCATTGAACTGCTCTTATACGAAGGTG-----AAATGGA 1163
BSNT_05299___ 1149 AGATTCTGGGGCTGCTGACG-----TTTCAGAGGATGCACTTTTCGCCTA 1193
||| ||| |||||||.|||||..||||.||..|
BPUM_3120 1164 AGA--------------ACGGTCTTTTTCAGAAGATGCGGTTTTTGCAAA 1199
BSNT_05299___ 1194 TCAAACGG--TCAAACTATTAGAGCAAGCTGAAAAAGAAGAGATGAAAAC 1241
.||..||| ||.|.| ||.||..|||||| |..|..|
BPUM_3120 1200 ACAGGCGGCATCCAGC--TTGGAAGAAGCTG------------TTCAGCC 1235
BSNT_05299___ 1242 AGA-AGTCATGAGC-----TGCTGGGTTTTCCATGTCATCCAGCAAATTC 1285
.|| ||||||..|| |..|||.|.||||||.|.||.|||||....|
BPUM_3120 1236 TGACAGTCATATGCCTTATTTTTGGTTATTCCATATTATTCAGCAGGCAC 1285
BSNT_05299___ 1286 GTGCAGTTGCT-CCGTTGAAAAATGAGAAAGGC-------TGGGCAGCAG 1327
|||| |.|| .|||.||.|| ||.|||.|| ||||||||||
BPUM_3120 1286 GTGC---TTCTGGCGTAGATAA--GAAAAATGCGCCTGCATGGGCAGCAG 1330
BSNT_05299___ 1328 CCATC-TGTTATATTTGGA---AAGAAGCCCATGGCAAGCAAGA------ 1367
|||| |.||||.|.|||| |.|| ||||| ||||
BPUM_3120 1331 -CATCTTATTATGTATGGATGCAGGA--------GCAAG-AAGAGTCTAT 1370
BSNT_05299___ 1368 CACGAAAAAAGACACAGCGGCCCGATTCGGCATCTCTC---------CGG 1408
.|..|||||||| |||| ||||| ||| |.|
BPUM_3120 1371 TAGCAAAAAAGA-----------GATT--GCATC-CTCTTTTCAAATCAG 1406
BSNT_05299___ 1409 -----CAACTTTGACGAAATATATGAA------ATATATTGATGAT--AT 1445
.|||..||.|.|| |||.||| || |||.|.|| ||
BPUM_3120 1407 TGTTCAAACACTGTCTAA--ATACGAACAAGTCAT---TTGCTCATTAAT 1451
BSNT_05299___ 1446 TCTAGAATAG 1455
| |||||.
BPUM_3120 1452 T---GAATAA 1458
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