Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05297 and BPUM_3119
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05297___yvcE.1.24716.seq
# -bsequence dna-align/BPUM_3119.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05297___yvcE-BPUM_3119.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05297___yvcE-BPUM_3119.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05297___yvcE
# 2: BPUM_3119
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity: 998/1545 (64.6%)
# Similarity: 998/1545 (64.6%)
# Gaps: 288/1545 (18.6%)
# Score: 3222.0
#
#
#=======================================
BSNT_05297___ 1 GTGAGAAAGAGTTTAATTACACTTGGTTTGGCTTCCGTCATCGGGACAAG 50
|.||||.||||| |||||..|.|||||.|||||.||.|||||..|.||
BPUM_3119 1 --GTGAAAAAGTTT-ATTACTTTCGGTTTAGCTTCGGTGATCGGAGCGAG 47
BSNT_05297___ 51 CAGTTTTTTGATCCCATTTAC-----AAGTAAAACTGCATCGGCGGAAAC 95
|.||||.||.||||||||||| |||.||| .||| |.|||
BPUM_3119 48 CGGTTTATTTATCCCATTTACTCATGAAGCAAA--CGCA----CAGAA-- 89
BSNT_05297___ 96 ATTAGATGAAAAGAAACAAAAAATCGAAAGCAAGCAATCTGAGGTTGCTT 145
.||.||..|||||||||||.|..|.||.||||||||||||||||||
BPUM_3119 90 CTTTGAACAAAAGAAACAAGAGCTGGACAGCAAGCAATCTGAGGTT---- 135
BSNT_05297___ 146 CCAGCA------TTGAAGCGAAGGAAAAAGAATTAACCGAGCTTCAGGAA 189
|.|| ||.|| |||.||||||| .||||||
BPUM_3119 136 --AACAAAAACCTTCAA---AAGAAAAAAGA------TGAGCTT------ 168
BSNT_05297___ 190 AATCAATCAAAGATTGA---AAAAGAA------------------CTGAA 218
||||||.|||| ||||.|| ||.||
BPUM_3119 169 ------TCAAAGCTTGAAGCAAAACAAGAGGCACTTGCACTAAAGCTAAA 212
BSNT_05297___ 219 AGACATTAACGCTAAGGCGCTTGATACAAGCAA-----CAAGATCGAAGA 263
|||.|||.|||..|| .|||| ||.||.||| ||| ||||||||
BPUM_3119 213 AGAAATTGACGAGAA--AGCTT--TAAAAACAAGTGATCAA-ATCGAAGA 257
BSNT_05297___ 264 TAAAAAAGAAGAAAACGATAAAACAAAAGAAGAAATCAAAAAACTAAAAA 313
.|||.||.|||||||.||..||||.|||.||||||||||...|||.||||
BPUM_3119 258 AAAACAAAAAGAAAATGAACAAACGAAAAAAGAAATCAACGCACTGAAAA 307
BSNT_05297___ 314 AAGAGATTAAAGAAACAGAAGCACGCATCGAAAAACGCAATGAAATCCTG 363
||||.|||...||.||.|||..|||.||.|||.|..|.||..||.||.||
BPUM_3119 308 AAGACATTGCTGATACTGAAAAACGTATTGAAGATAGAAACAAATTCTTG 357
BSNT_05297___ 364 AAAAAACGCGTTCGTTCTTTACAGGAAAGCGGCGGATCTCAAGG--ATAC 411
|||||.||.||.|||.|..|.||.|||||||||||.||| |.| ||||
BPUM_3119 358 AAAAAGCGTGTACGTGCGCTTCAAGAAAGCGGCGGTTCT--ACGAAATAC 405
BSNT_05297___ 412 ATAGATGTTCTTCTAGGATCAACAAGCTTTGGTGACTTTATCTCTCGTGC 461
||||||||..|.||||||.|.|.|||||||.|.||.||.|||...|||||
BPUM_3119 406 ATAGATGTATTACTAGGAGCGAAAAGCTTTAGCGATTTCATCAGCCGTGC 455
BSNT_05297___ 462 GACTGCGGTTTCATCTA---TTGTGGACGCAGACAAAGATTTAATCAAAC 508
...|||.|| ||||| |..|..|||||||||..||..|.||.|||.
BPUM_3119 456 AGGTGCAGT---ATCTACACTGATCAACGCAGACAGCGAAATCATTAAAG 502
BSNT_05297___ 509 AGCAAGAGCAGGATAAAGCGAAGCTCGAAGATTCTGAAGCGGATTTGAAT 558
|||||||..|.||.|||||..||||..||.|.||||||...||.||.||.
BPUM_3119 503 AGCAAGAAAAAGACAAAGCTGAGCTTCAAAAGTCTGAAAACGAATTAAAC 552
BSNT_05297___ 559 GATAAGCTGAAAGAAGTTCAAGCTGCATTGGCTAAATTAGAAACAATGCA 608
...|||||..||||.||||||....||.|.||.||..|.||||||.|.||
BPUM_3119 553 ACAAAGCTTGAAGATGTTCAAAAAACACTTGCAAAGCTTGAAACACTTCA 602
BSNT_05297___ 609 AAAAGACCTTG-ATAAACAGCTTAATGAAAAAGACAAGCTTTTCGACGAA 657
||.||| |||| |||||||||||.||||||||||||||||.|||
BPUM_3119 603 AACAGA-CTTGAATAAACAGCTTGATGAAAAAGACAAGCTATTC------ 645
BSNT_05297___ 658 GCAAAAGCAAGCCAAAA--GAAAACGGCTAAAGCGAT--TTCT------- 696
|||||||..|||| .||||.|| |||.|.| ||||
BPUM_3119 646 ----AAGCAAGTGAAAAAGCAAAAAGG---AAGTGCTTCTTCTCAAATCA 688
BSNT_05297___ 697 --GAATTAAAATCA--GAGGCGTCTGAAC----TTGCAAATCAAAAAG-- 736
||.||||| || ||||| .||| |||||..|.||||||
BPUM_3119 689 GCGAGTTAAA--CAGTGAGGC----TAACAGCATTGCATCTGAAAAAGAC 732
BSNT_05297___ 737 ---------------CAAATACTGAAGCTGAACAAGCA-CGCATCAAAAA 770
||||.|| ||||||||.|||.| ||
BPUM_3119 733 GCAACAATCGCTGCTCAAAAAC--AAGCTGAAAAAGAAGCG--------- 771
BSNT_05297___ 771 AGAACAAGAAGCAGCGGCTGCTTTGATCAAAAAGCAGGAAGAAGCACAAA 820
|| ||||||||| |||||||||| .|||||| |||
BPUM_3119 772 AG----AGAAGCAGC-----------TCAAAAAGCA-AAAGAAG---AAA 802
BSNT_05297___ 821 AAGCATCTGATGAAACACAAACAGATGACAGC--CAAACGGCTA-----C 863
|||.| .|||.|| ||||| |||| ||| |||| |
BPUM_3119 803 AAGTA------CAAAGAC-AACAG----CAGCGTCAA---GCTAGTGTTC 838
BSNT_05297___ 864 AACTGAATCAGCAAAAG-CA--AGCTCATCTGATGA---------TTCTT 901
| ||||.||| || ||||||.||.|.|| .||||
BPUM_3119 839 A--------AGCAGAAGACAATAGCTCAACTAACGACAGTAGCCCGTCTT 880
BSNT_05297___ 902 CAGACAATTCTTC--TAAC---GGTTCATCAAACAGCTCGTCTAACGGCT 946
||.|.|| | |||| ||.||.|||||||.| |||
BPUM_3119 881 CAAATAA-----CAGTAACAGTGGATCTTCAAACAAC------AAC---- 915
BSNT_05297___ 947 CATCTTCTAAGAAGAGCAGCGGCTCAAACAGCAATTCA------------ 984
||.||.|.|||| |||||||.||||
BPUM_3119 916 --------AATAATAACAGC------AACAGCAGTTCACCAAGCAAGAAG 951
BSNT_05297___ 985 ---------GGCGG-----CA-CTGTTATCAGTAACTCTGGCGGAATTGA 1019
||||| || ||||.|.|||||||...||||||||.||
BPUM_3119 952 CCATCTACTGGCGGTGGATCACCTGTCAGCAGTAACGTAGGCGGAATCGA 1001
BSNT_05297___ 1020 AGGCGCGATCAGCGTTGGTTCAAGCATTGTAGGACAATCTCCGTACAA-- 1067
|||.|||||||||...|||||.|..|||||.|||||||||||.||.||
BPUM_3119 1002 AGGTGCGATCAGCACAGGTTCTACTATTGTTGGACAATCTCCATATAAAT 1051
BSNT_05297___ 1068 -GTTTGGCGGCGGA-CGCAGTCAGTCTGATATCAACAACCGTATTTTTGA 1115
|..|||||||.|| |.|| || |||||||..||...|||..||||||
BPUM_3119 1052 GGGCTGGCGGCAGATCACA---AG-CTGATATTGACGCACGTCGTTTTGA 1097
BSNT_05297___ 1116 CTGCTCATCATTCGTACGCTGGGCATACGCTTCTGCAGGTGTTAACCTTG 1165
|||.||.||||||||.||||||||||..||.||.|||||..|.|||||||
BPUM_3119 1098 CTGTTCTTCATTCGTTCGCTGGGCATTTGCATCAGCAGGCATCAACCTTG 1147
BSNT_05297___ 1166 GACCTGTAGGCGGGACAACTACTGATACGTTAGTTGGCAGAGGACAAGCT 1215
||||.||.|||||.|||||.||.||||||.|.||.||.|.||||..||||
BPUM_3119 1148 GACCAGTTGGCGGTACAACAACAGATACGCTTGTAGGTAAAGGAAGAGCT 1197
BSNT_05297___ 1216 GTCAGCGCGTCTGAAATGAAACGCGGAGACCTTGTGTTCTTTGACACTTA 1265
||.||.||.|||||.|||||||||||||||||||||||||||||.||.||
BPUM_3119 1198 GTAAGTGCATCTGACATGAAACGCGGAGACCTTGTGTTCTTTGATACGTA 1247
BSNT_05297___ 1266 CAAAACAAATGGACACGTAGGAATCTACTTAGGAAACGGTACTTTCCTAA 1315
.|||..||||||||||||.||.||.|||||||||||||||||.|||.|.|
BPUM_3119 1248 TAAAGTAAATGGACACGTTGGTATTTACTTAGGAAACGGTACATTCTTGA 1297
BSNT_05297___ 1316 ACGACAATACATCTCATGGCGTATCTGTTGACTCTATGAGCAATCCTTAC 1365
||||.||.|..||||..||.||.||.||||||||||||||||||..||||
BPUM_3119 1298 ACGATAACAGCTCTCGCGGTGTTTCAGTTGACTCTATGAGCAATGTTTAC 1347
BSNT_05297___ 1366 TGGAAAAAAGCATTTAAAGGCGTTGTAAGACGTGTTGTTCAATAA 1410
|||||||||||.||.||.||||||||||||.|.||.|||.|||||
BPUM_3119 1348 TGGAAAAAAGCTTTCAATGGCGTTGTAAGAAGAGTCGTTGAATAA 1392
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