Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05297 and BPUM_3119

See Amino acid alignment / Visit BSNT_05297 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_05297___yvcE.1.24716.seq
#    -bsequence dna-align/BPUM_3119.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05297___yvcE-BPUM_3119.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05297___yvcE-BPUM_3119.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05297___yvcE
# 2: BPUM_3119
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity:     998/1545 (64.6%)
# Similarity:   998/1545 (64.6%)
# Gaps:         288/1545 (18.6%)
# Score: 3222.0
# 
#
#=======================================

BSNT_05297___      1 GTGAGAAAGAGTTTAATTACACTTGGTTTGGCTTCCGTCATCGGGACAAG     50
                       |.||||.||||| |||||..|.|||||.|||||.||.|||||..|.||
BPUM_3119          1 --GTGAAAAAGTTT-ATTACTTTCGGTTTAGCTTCGGTGATCGGAGCGAG     47

BSNT_05297___     51 CAGTTTTTTGATCCCATTTAC-----AAGTAAAACTGCATCGGCGGAAAC     95
                     |.||||.||.|||||||||||     |||.|||  .|||    |.|||  
BPUM_3119         48 CGGTTTATTTATCCCATTTACTCATGAAGCAAA--CGCA----CAGAA--     89

BSNT_05297___     96 ATTAGATGAAAAGAAACAAAAAATCGAAAGCAAGCAATCTGAGGTTGCTT    145
                     .||.||..|||||||||||.|..|.||.||||||||||||||||||    
BPUM_3119         90 CTTTGAACAAAAGAAACAAGAGCTGGACAGCAAGCAATCTGAGGTT----    135

BSNT_05297___    146 CCAGCA------TTGAAGCGAAGGAAAAAGAATTAACCGAGCTTCAGGAA    189
                       |.||      ||.||   |||.|||||||      .||||||      
BPUM_3119        136 --AACAAAAACCTTCAA---AAGAAAAAAGA------TGAGCTT------    168

BSNT_05297___    190 AATCAATCAAAGATTGA---AAAAGAA------------------CTGAA    218
                           ||||||.||||   ||||.||                  ||.||
BPUM_3119        169 ------TCAAAGCTTGAAGCAAAACAAGAGGCACTTGCACTAAAGCTAAA    212

BSNT_05297___    219 AGACATTAACGCTAAGGCGCTTGATACAAGCAA-----CAAGATCGAAGA    263
                     |||.|||.|||..||  .||||  ||.||.|||     ||| ||||||||
BPUM_3119        213 AGAAATTGACGAGAA--AGCTT--TAAAAACAAGTGATCAA-ATCGAAGA    257

BSNT_05297___    264 TAAAAAAGAAGAAAACGATAAAACAAAAGAAGAAATCAAAAAACTAAAAA    313
                     .|||.||.|||||||.||..||||.|||.||||||||||...|||.||||
BPUM_3119        258 AAAACAAAAAGAAAATGAACAAACGAAAAAAGAAATCAACGCACTGAAAA    307

BSNT_05297___    314 AAGAGATTAAAGAAACAGAAGCACGCATCGAAAAACGCAATGAAATCCTG    363
                     ||||.|||...||.||.|||..|||.||.|||.|..|.||..||.||.||
BPUM_3119        308 AAGACATTGCTGATACTGAAAAACGTATTGAAGATAGAAACAAATTCTTG    357

BSNT_05297___    364 AAAAAACGCGTTCGTTCTTTACAGGAAAGCGGCGGATCTCAAGG--ATAC    411
                     |||||.||.||.|||.|..|.||.|||||||||||.|||  |.|  ||||
BPUM_3119        358 AAAAAGCGTGTACGTGCGCTTCAAGAAAGCGGCGGTTCT--ACGAAATAC    405

BSNT_05297___    412 ATAGATGTTCTTCTAGGATCAACAAGCTTTGGTGACTTTATCTCTCGTGC    461
                     ||||||||..|.||||||.|.|.|||||||.|.||.||.|||...|||||
BPUM_3119        406 ATAGATGTATTACTAGGAGCGAAAAGCTTTAGCGATTTCATCAGCCGTGC    455

BSNT_05297___    462 GACTGCGGTTTCATCTA---TTGTGGACGCAGACAAAGATTTAATCAAAC    508
                     ...|||.||   |||||   |..|..|||||||||..||..|.||.|||.
BPUM_3119        456 AGGTGCAGT---ATCTACACTGATCAACGCAGACAGCGAAATCATTAAAG    502

BSNT_05297___    509 AGCAAGAGCAGGATAAAGCGAAGCTCGAAGATTCTGAAGCGGATTTGAAT    558
                     |||||||..|.||.|||||..||||..||.|.||||||...||.||.||.
BPUM_3119        503 AGCAAGAAAAAGACAAAGCTGAGCTTCAAAAGTCTGAAAACGAATTAAAC    552

BSNT_05297___    559 GATAAGCTGAAAGAAGTTCAAGCTGCATTGGCTAAATTAGAAACAATGCA    608
                     ...|||||..||||.||||||....||.|.||.||..|.||||||.|.||
BPUM_3119        553 ACAAAGCTTGAAGATGTTCAAAAAACACTTGCAAAGCTTGAAACACTTCA    602

BSNT_05297___    609 AAAAGACCTTG-ATAAACAGCTTAATGAAAAAGACAAGCTTTTCGACGAA    657
                     ||.||| |||| |||||||||||.||||||||||||||||.|||      
BPUM_3119        603 AACAGA-CTTGAATAAACAGCTTGATGAAAAAGACAAGCTATTC------    645

BSNT_05297___    658 GCAAAAGCAAGCCAAAA--GAAAACGGCTAAAGCGAT--TTCT-------    696
                         |||||||..||||  .||||.||   |||.|.|  ||||       
BPUM_3119        646 ----AAGCAAGTGAAAAAGCAAAAAGG---AAGTGCTTCTTCTCAAATCA    688

BSNT_05297___    697 --GAATTAAAATCA--GAGGCGTCTGAAC----TTGCAAATCAAAAAG--    736
                       ||.|||||  ||  |||||    .|||    |||||..|.||||||  
BPUM_3119        689 GCGAGTTAAA--CAGTGAGGC----TAACAGCATTGCATCTGAAAAAGAC    732

BSNT_05297___    737 ---------------CAAATACTGAAGCTGAACAAGCA-CGCATCAAAAA    770
                                    ||||.||  ||||||||.|||.| ||         
BPUM_3119        733 GCAACAATCGCTGCTCAAAAAC--AAGCTGAAAAAGAAGCG---------    771

BSNT_05297___    771 AGAACAAGAAGCAGCGGCTGCTTTGATCAAAAAGCAGGAAGAAGCACAAA    820
                     ||    |||||||||           |||||||||| .||||||   |||
BPUM_3119        772 AG----AGAAGCAGC-----------TCAAAAAGCA-AAAGAAG---AAA    802

BSNT_05297___    821 AAGCATCTGATGAAACACAAACAGATGACAGC--CAAACGGCTA-----C    863
                     |||.|      .|||.|| |||||    ||||  |||   ||||     |
BPUM_3119        803 AAGTA------CAAAGAC-AACAG----CAGCGTCAA---GCTAGTGTTC    838

BSNT_05297___    864 AACTGAATCAGCAAAAG-CA--AGCTCATCTGATGA---------TTCTT    901
                     |        ||||.||| ||  ||||||.||.|.||         .||||
BPUM_3119        839 A--------AGCAGAAGACAATAGCTCAACTAACGACAGTAGCCCGTCTT    880

BSNT_05297___    902 CAGACAATTCTTC--TAAC---GGTTCATCAAACAGCTCGTCTAACGGCT    946
                     ||.|.||     |  ||||   ||.||.|||||||.|      |||    
BPUM_3119        881 CAAATAA-----CAGTAACAGTGGATCTTCAAACAAC------AAC----    915

BSNT_05297___    947 CATCTTCTAAGAAGAGCAGCGGCTCAAACAGCAATTCA------------    984
                             ||.||.|.||||      |||||||.||||            
BPUM_3119        916 --------AATAATAACAGC------AACAGCAGTTCACCAAGCAAGAAG    951

BSNT_05297___    985 ---------GGCGG-----CA-CTGTTATCAGTAACTCTGGCGGAATTGA   1019
                              |||||     || ||||.|.|||||||...||||||||.||
BPUM_3119        952 CCATCTACTGGCGGTGGATCACCTGTCAGCAGTAACGTAGGCGGAATCGA   1001

BSNT_05297___   1020 AGGCGCGATCAGCGTTGGTTCAAGCATTGTAGGACAATCTCCGTACAA--   1067
                     |||.|||||||||...|||||.|..|||||.|||||||||||.||.||  
BPUM_3119       1002 AGGTGCGATCAGCACAGGTTCTACTATTGTTGGACAATCTCCATATAAAT   1051

BSNT_05297___   1068 -GTTTGGCGGCGGA-CGCAGTCAGTCTGATATCAACAACCGTATTTTTGA   1115
                      |..|||||||.|| |.||   || |||||||..||...|||..||||||
BPUM_3119       1052 GGGCTGGCGGCAGATCACA---AG-CTGATATTGACGCACGTCGTTTTGA   1097

BSNT_05297___   1116 CTGCTCATCATTCGTACGCTGGGCATACGCTTCTGCAGGTGTTAACCTTG   1165
                     |||.||.||||||||.||||||||||..||.||.|||||..|.|||||||
BPUM_3119       1098 CTGTTCTTCATTCGTTCGCTGGGCATTTGCATCAGCAGGCATCAACCTTG   1147

BSNT_05297___   1166 GACCTGTAGGCGGGACAACTACTGATACGTTAGTTGGCAGAGGACAAGCT   1215
                     ||||.||.|||||.|||||.||.||||||.|.||.||.|.||||..||||
BPUM_3119       1148 GACCAGTTGGCGGTACAACAACAGATACGCTTGTAGGTAAAGGAAGAGCT   1197

BSNT_05297___   1216 GTCAGCGCGTCTGAAATGAAACGCGGAGACCTTGTGTTCTTTGACACTTA   1265
                     ||.||.||.|||||.|||||||||||||||||||||||||||||.||.||
BPUM_3119       1198 GTAAGTGCATCTGACATGAAACGCGGAGACCTTGTGTTCTTTGATACGTA   1247

BSNT_05297___   1266 CAAAACAAATGGACACGTAGGAATCTACTTAGGAAACGGTACTTTCCTAA   1315
                     .|||..||||||||||||.||.||.|||||||||||||||||.|||.|.|
BPUM_3119       1248 TAAAGTAAATGGACACGTTGGTATTTACTTAGGAAACGGTACATTCTTGA   1297

BSNT_05297___   1316 ACGACAATACATCTCATGGCGTATCTGTTGACTCTATGAGCAATCCTTAC   1365
                     ||||.||.|..||||..||.||.||.||||||||||||||||||..||||
BPUM_3119       1298 ACGATAACAGCTCTCGCGGTGTTTCAGTTGACTCTATGAGCAATGTTTAC   1347

BSNT_05297___   1366 TGGAAAAAAGCATTTAAAGGCGTTGTAAGACGTGTTGTTCAATAA   1410
                     |||||||||||.||.||.||||||||||||.|.||.|||.|||||
BPUM_3119       1348 TGGAAAAAAGCTTTCAATGGCGTTGTAAGAAGAGTCGTTGAATAA   1392


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