Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05296 and BPUM_3117
See
Amino acid alignment /
Visit
BSNT_05296 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05296___trxB.1.24716.seq
# -bsequence dna-align/BPUM_3117___trxB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05296___trxB-BPUM_3117___trxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05296___trxB-BPUM_3117___trxB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05296___trxB
# 2: BPUM_3117___trxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity: 755/953 (79.2%)
# Similarity: 755/953 (79.2%)
# Gaps: 25/953 ( 2.6%)
# Score: 3023.0
#
#
#=======================================
BSNT_05296___ 1 GTGTCAGAAGAAAAAATTTATGACGTGATTATAATCGGCGCGGGCCCTGC 50
|||||||||||||||||.||.||...|||.||.||.||.|||||.|||||
BPUM_3117___t 1 GTGTCAGAAGAAAAAATCTACGATACGATCATCATTGGAGCGGGACCTGC 50
BSNT_05296___ 51 TGGGATGACGGCCGCTGTATACACATCAAGAGCGAATTTATCGACATTAA 100
.||.|||||.||||||||.||.||||||.|.|..|||.|.||.|||||.|
BPUM_3117___t 51 CGGAATGACAGCCGCTGTTTATACATCACGTGGAAATCTTTCAACATTGA 100
BSNT_05296___ 101 TGATTGAAAGAGGAATTCCTGGCGGACAAATGGCCAATACGGAAGATGTA 150
|||||||||||||.|||||.|||||.||||||||.||||||||||||||.
BPUM_3117___t 101 TGATTGAAAGAGGGATTCCAGGCGGTCAAATGGCTAATACGGAAGATGTC 150
BSNT_05296___ 151 GAAAACTATCCTGGATTCGAAAGTATCCTTGGGCCTGAGCTTTCTAACAA 200
||.|||||||||||.||.|||||.||..|.|||||.||.|||||.||.||
BPUM_3117___t 151 GAGAACTATCCTGGCTTTGAAAGCATTTTAGGGCCAGAACTTTCAAATAA 200
BSNT_05296___ 201 AATGTTTGAACACGCGAAAAAATTCGGCGCTGAATACGCTTATGGCGATA 250
||||||.||.||.|||||.||||||||.||||||||.||.||||||||||
BPUM_3117___t 201 AATGTTCGACCATGCGAAGAAATTCGGTGCTGAATATGCATATGGCGATA 250
BSNT_05296___ 251 TTAAAGAGGTCATTGACGGCAAAGAGTACAAAGTAGTCAAAGCTGGTTCA 300
|.|||||..||.|||||||..|||||||||||.|.||||||||.||||||
BPUM_3117___t 251 TCAAAGAAATCGTTGACGGTGAAGAGTACAAAATCGTCAAAGCCGGTTCA 300
BSNT_05296___ 301 AAGGAATATAAAGCCCGTGCTGTCATCATTGCTGCAGGTGCGGAATATAA 350
||.|||||.||||..||..|||||||.|||.|.||||||||||||||.||
BPUM_3117___t 301 AAAGAATACAAAGGACGCTCTGTCATTATTTCAGCAGGTGCGGAATACAA 350
BSNT_05296___ 351 AAAAATCGGCGTGCCTGGCGAAAAAGAATTGGGCGGACGCGGTGTATCTT 400
|||||||||.|..||.||.|||||||||.|.||||||||.||.||.||||
BPUM_3117___t 351 AAAAATCGGTGCACCAGGTGAAAAAGAACTTGGCGGACGAGGCGTCTCTT 400
BSNT_05296___ 401 ATTGTGCAGTATGTGACGGCGCTTTCTTTAAAGGCAAAGAACTTGTCGTT 450
|.|||||||||||||||||.||||||||.|||...|||||.||.|||||.
BPUM_3117___t 401 ACTGTGCAGTATGTGACGGTGCTTTCTTCAAAAATAAAGAGCTCGTCGTC 450
BSNT_05296___ 451 GTTGGCGGCGGAGATTCCGCGGTTGAAGAAGGCGTATATCTGACTCGTTT 500
.||||.||.|||||.||.|||||.|||||.||.||.||.||.||.||.||
BPUM_3117___t 451 ATTGGTGGAGGAGACTCTGCGGTAGAAGAGGGTGTGTACCTCACACGCTT 500
BSNT_05296___ 501 CGCTTCAAAAGTAACGATTGTTCACAGACGTGATAAACTCCGTGCTCAAA 550
.||.|||||||||||.||.|||||.|||||.|||||.||.|||||.||||
BPUM_3117___t 501 TGCGTCAAAAGTAACAATCGTTCATAGACGCGATAAGCTTCGTGCCCAAA 550
BSNT_05296___ 551 GTATTCTTCAAGCGAGAGCATTTGATAATGAAAAAGTTGACTTCCTATGG 600
|.|||.|.||||||.|.||.|||||||||||||||.|.||||||.|.|||
BPUM_3117___t 551 GCATTTTACAAGCGCGTGCTTTTGATAATGAAAAAATCGACTTCATGTGG 600
BSNT_05296___ 601 AACAAAACCGTGAAGGAAATTCATGAGGAAAACGGCAAAGTCGGTAACGT 650
|||||||||||.||..|.|||.||||.||.|||||.||||||||.|..||
BPUM_3117___t 601 AACAAAACCGTTAAACAGATTAATGAAGAGAACGGTAAAGTCGGCAGTGT 650
BSNT_05296___ 651 AACGCTTG-TCGATACGGTAACCGGTGAAGAAAG-TGAATTCAAAACAGA 698
||| |||| |.||||||||.||.|||||| |||| .||.||.||||||||
BPUM_3117___t 651 AAC-CTTGATTGATACGGTGACTGGTGAA-AAAGAAGACTTTAAAACAGA 698
BSNT_05296___ 699 CGGCGTATTCATTTACATCGGCATGCTTCCTCTGTCTAAACCGTTTGAAA 748
|||.||.||.||.||.||.||.||||||||..|.||||||||.|||||||
BPUM_3117___t 699 CGGGGTCTTTATCTATATTGGGATGCTTCCATTATCTAAACCATTTGAAA 748
BSNT_05296___ 749 ATCTGGGCATTACGAATGAAGAAGGCTACATCGAAACAAACGAACGCATG 798
||||.||||||||.|||||||||||.||.|||||.|||||||||.|.|||
BPUM_3117___t 749 ATCTCGGCATTACAAATGAAGAAGGATATATCGAGACAAACGAAAGAATG 798
BSNT_05296___ 799 GAGACAAAGGTTGAAGGAATTTTCGCTGCCGGAGACATTCGCGAAAAATC 848
||.||||..||.|||||.||||||||.||.||.||||||||.||||||.|
BPUM_3117___t 799 GAAACAAGAGTGGAAGGTATTTTCGCCGCTGGTGACATTCGTGAAAAAAC 848
BSNT_05296___ 849 ACTGCGCCAAATCGTAACGGCTACAGGAGACGGAAGTATTGCGGCACAAA 898
|||.||.|||||.||.||.||.|||||.||||||||||||||.|||||||
BPUM_3117___t 849 ACTTCGTCAAATTGTGACAGCAACAGGTGACGGAAGTATTGCCGCACAAA 898
BSNT_05296___ 899 GCGTACAGCATTATGTCGAAGAGCTT---------------------CAA 927
|||..|||||||||||.||||||||| .||
BPUM_3117___t 899 GCGCTCAGCATTATGTAGAAGAGCTTGCTGAAAAGCTGAAAGCAGCGAAA 948
BSNT_05296___ 928 TAA 930
|||
BPUM_3117___t 949 TAA 951
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.