Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05294 and BPUM_3116
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05294___yvcI.1.24716.seq
# -bsequence dna-align/BPUM_3116.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05294___yvcI-BPUM_3116.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05294___yvcI-BPUM_3116.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05294___yvcI
# 2: BPUM_3116
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 495
# Identity: 357/495 (72.1%)
# Similarity: 357/495 (72.1%)
# Gaps: 48/495 ( 9.7%)
# Score: 1322.5
#
#
#=======================================
BSNT_05294___ 1 GTGACGTACTTGCAAAGAGTGACAAATTGTGTGCTTCA-GACGGATGACA 49
.|||||.||||.||.|||||||||||.|| .|| ||.||..
BPUM_3116 1 ---------ATGCAACGAGTAACCAATTGTGTGCTGCATCAC-GAAGATC 40
BSNT_05294___ 50 AAGTTCTTCTGCTTCAAAAGCCGAGACGCGGCTGGTGGGTCGCGCCGGGC 99
|||||||..||||.||||||||.|||||.|||||||||||.|||||||||
BPUM_3116 41 AAGTTCTCTTGCTGCAAAAGCCAAGACGGGGCTGGTGGGTAGCGCCGGGC 90
BSNT_05294___ 100 GGCAAGATGGAGAGCGGAGAATCAGTCAGAGACTCCGTCATCAGAGAGTA 149
|||||.|||||.|||||||||||.||||..||.||.|||.|..|||||||
BPUM_3116 91 GGCAAAATGGAAAGCGGAGAATCGGTCAAGGATTCAGTCGTTCGAGAGTA 140
BSNT_05294___ 150 CAGAGAAGAGACTGGTATCTATATCATAAATCCTCAATTAAAAGGCGTTT 199
.||||||||.||.||.||.|||||..||||||||||.||||||||.||||
BPUM_3116 141 TAGAGAAGAAACAGGAATTTATATTTTAAATCCTCAGTTAAAAGGTGTTT 190
BSNT_05294___ 200 TTACCTTTATTATTAAAGACGGTGACCACATTGTCTC-CGAGTGGATGAT 248
||||||||||.||.|||||.||.||.||.||.|| || .|||||||||||
BPUM_3116 191 TTACCTTTATCATAAAAGAAGGCGATCAAATCGT-TCAAGAGTGGATGAT 239
BSNT_05294___ 249 GTTTACGTTTGTCGCTGATTCATATACAGGACAAAATGTATCAGAATCGG 298
|||.||.|||.|.||.|||||||.|||.|||.||||.||..||||.||.|
BPUM_3116 240 GTTCACCTTTATGGCAGATTCATTTACTGGAAAAAACGTGACAGAGTCAG 289
BSNT_05294___ 299 AGGAAGGGA----AACTGCAGTGGCACGATGTCAATGA-------CATTC 337
|||||||.| || |||||||.||.|..||.|| ||||
BPUM_3116 290 AGGAAGGCATTTTAA----AGTGGCATGAAGCAAAGGATGTGCCGCATT- 334
BSNT_05294___ 338 AGAACCTGCCTATGGCCCCTGGAGACGGCCATATCCTTGATTTTATGATG 387
|.||.|||||.||.|||||...||||||.||||||||.|||.|.
BPUM_3116 335 ------TACCGATGGCGCCAGGAGATTCCCATATTCTTGATTTCATGCTA 378
BSNT_05294___ 388 AAGGGACAAGGGCTGCTGCACGGCACATTTACGTATACACCGGACTTTGA 437
||||||.||||.||.|||||.||.||.||||||||||||||.||.|||||
BPUM_3116 379 AAGGGAAAAGGACTTCTGCATGGTACTTTTACGTATACACCTGATTTTGA 428
BSNT_05294___ 438 GCTGCTCAGTTATCGTTTAGACCCGCAGCACATCAAATAG----- 477
..||.|...||||||.|||||.|| ||||..||
BPUM_3116 429 ATTGATTGCTTATCGGTTAGATCC--------TCAAGGAGACTAA 465
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