Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05281 and BPUM_3106
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05281___yvdA.1.24716.seq
# -bsequence dna-align/BPUM_3106.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05281___yvdA-BPUM_3106.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05281___yvdA-BPUM_3106.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05281___yvdA
# 2: BPUM_3106
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 412/690 (59.7%)
# Similarity: 412/690 (59.7%)
# Gaps: 141/690 (20.4%)
# Score: 1240.0
#
#
#=======================================
BSNT_05281___ 0 -------------------------------------------------- 0
BPUM_3106 1 TTGAGAACACACGAAAGAAAAGGAGGTCAAGCAGGAGCTTACGTGACTTA 50
BSNT_05281___ 1 ----------------------ATGGTTTCTTTAACATCA------ATTT 22
||||..|| ||.||.| |||.
BPUM_3106 51 TAAAGAGATGGGAGATGGCAAAATGGGATC---AAAATTAGAACAGATTC 97
BSNT_05281___ 23 TGGAACACAA-TCAGCGGTTTGT-CAGTGAGAAGA-AGTATGAACCGTAC 69
|..|.||||| |||| .|||.|| || |||| ||| |.|||||.||.|||
BPUM_3106 98 TTCAGCACAATTCAG-AGTTCGTACA-TGAG-AGACATTATGAGCCTTAC 144
BSNT_05281___ 70 AAAACGACAAAGTTTCCTTCGAAA--AAGCTCGTCATTGTCACCTGTATG 117
|||.||...||.||||| ||||| ||.|||||.||..|.||.||.|||
BPUM_3106 145 AAAGCGGGGAAATTTCC--CGAAAAGAAACTCGTTATATTAACTTGCATG 192
BSNT_05281___ 118 GATACAAGGCTTACAGAACTTCTT-CCGCAAGCAATGGGGCTTAAAAACG 166
||||||.|.|||...||| ||.|| ||||||.|.|||||.||....||||
BPUM_3106 193 GATACACGTCTTTTGGAA-TTATTGCCGCAATCCATGGGACTGCGCAACG 241
BSNT_05281___ 167 GTGATGCTAAAATTGTAAAAAACGCGGGAGCCATCGTTTCTCACCCATTT 216
|||||||.||..|..|.|||||.|||||.||||||||..|.||.||.|||
BPUM_3106 242 GTGATGCGAAGGTCATTAAAAATGCGGGCGCCATCGTCACACATCCTTTT 291
BSNT_05281___ 217 GGAAGCGTGATGCGAAGCATACTGGTCGCGATTTATGAATTGCAGGCTGA 266
||.||.||||||||.||.||.||..|.||.||.||||||.|..||||.||
BPUM_3106 292 GGCAGTGTGATGCGGAGTATTCTTCTAGCTATCTATGAACTAAAGGCAGA 341
BSNT_05281___ 267 AGCGGTATGCATTGTCGGCCATCATGAATGCGGAATGTCTGGGCTGAATG 316
||.||||||||||||.||.||||||||||||||||||.|.||.|| ||
BPUM_3106 342 AGAGGTATGCATTGTAGGACATCATGAATGCGGAATGGCAGGTCT---TG 388
BSNT_05281___ 317 CG-----TCCTCGATT-CTTGAGAAAGCAAAGGAACGCGGGGTGGAGGAT 360
|| |||| || |||||.||.||.||.|..|||||..|.||.||.
BPUM_3106 389 CGGCAGATCCT---TTACTTGAAAAGGCGAAAGCGCGCGGTATTGAAGAA 435
BSNT_05281___ 361 AGCTGCCTGA--ATTTGCTGACGAGCGCCGGACTCGATTTGAAAACG--T 406
|..||..||| ||| .|||..|.|.|.||..|.||||| |||.| |
BPUM_3106 436 AAATGTTTGAGCATT--GTGAAAAACTCAGGGGTTGATTT--AAAGGGAT 481
BSNT_05281___ 407 GGCTGACTGGTTTTCACAGCGTAGAAGAAAGCGTTTCCCACAGTGTGAAC 456
|||||||.||.|||.|....||.|||||.|||||.|||||.||||||||.
BPUM_3106 482 GGCTGACAGGCTTTGATTCGGTTGAAGAGAGCGTGTCCCAAAGTGTGAAA 531
BSNT_05281___ 457 ATGATTAAGAATCATCCGCTGCTTCCGAAAAAAGTGCCGGTTCACGGACT 506
.||.|.||..|.|||||.||..|.||.||..|.|||.|.|||||.|||||
BPUM_3106 532 TTGGTCAAAGAGCATCCACTTATGCCAAATGATGTGGCTGTTCATGGACT 581
BSNT_05281___ 507 TGTCATTCATCCTGAAACAGGAAAACTTGATGTGGTCATTAACGGTTATG 556
|||||||.||||.|.|||.|||||..|.||||| .|||.||
BPUM_3106 582 TGTCATTGATCCAGCAACGGGAAAGTTGGATGT----------CGTTGTG 621
BSNT_05281___ 557 AAACTGAGCTTATAAACA-----AT---CACT---CATAA 585
||| .||||||| || ||.| |.|||
BPUM_3106 622 AAA-------GATAAACAGATTGATGCGCAGTATACCTAA 654
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