Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05278 and BPUM_3104

See Amino acid alignment / Visit BSNT_05278 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_05278.1.24716.seq
#    -bsequence dna-align/BPUM_3104___mazG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05278-BPUM_3104___mazG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05278-BPUM_3104___mazG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05278
# 2: BPUM_3104___mazG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 341
# Identity:     143/341 (41.9%)
# Similarity:   143/341 (41.9%)
# Gaps:         142/341 (41.6%)
# Score: 403.5
# 
#
#=======================================

BSNT_05278         0 --------------------------------------------------      0
                                                                       
BPUM_3104___m      1 ATGCAAACAAATGAGATGGAGAAATGGATCAAGGATTTTTACAAAAAGAG     50

BSNT_05278         0 --------------------------------------------------      0
                                                                       
BPUM_3104___m     51 AAATTGGGCAGAATACGGACCGTTTATCCGGTTAGGGTTCCTGATGGAAG    100

BSNT_05278         1 -----------TTGGCCCGGGCTGTCAGGGCGTATGAAATCGGCAGAGAC     39
                                .|.||.||.|||||.||.||...|||.|||||..|.|||
BPUM_3104___m    101 AAACAGGCGAACTCGCGCGCGCTGTTAGAGCCATTGAGATCGGACGTGAC    150

BSNT_05278        40 CGGCCGGATGAG---AAAGAATCGTCACGCGCTGAGCAAAAACAAGAATT     86
                     |||||.||.|||   |||.||...|||   ||||||...||...||||.|
BPUM_3104___m    151 CGGCCTGACGAGCAAAAACAAAAATCA---GCTGAGTTGAAGAGAGAACT    197

BSNT_05278        87 GATTGAAGAAATGGGAGATGTCATCGGAAATATCGCCATTCTTGCTGATA    136
                     ..|||||||||||||||||||..|.||.|||.|....|||.|.||.|||.
BPUM_3104___m    198 CGTTGAAGAAATGGGAGATGTATTAGGGAATCTACTTATTTTAGCCGATC    247

BSNT_05278       137 TGTATGGTGTCTCTTTAGAAGACG------TCATGAAGGCCCACCAAGAA    180
                     |.||||.||||.|..||||||| |      ||.|     |.||.|||.|.
BPUM_3104___m    248 TCTATGATGTCACAGTAGAAGA-GATTTTCTCCT-----CGCATCAACAG    291

BSNT_05278       181 AAACTGACAAAACGATTT---GAGCATGCATAA--------    210
                     |||||.|||||.||.|||   ||.| || |.||        
BPUM_3104___m    292 AAACTCACAAAGCGTTTTTCAGAAC-TG-AAAAGCACGTGA    330


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