Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05276 and BPUM_3103
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05276___yvdD.1.24716.seq
# -bsequence dna-align/BPUM_3103.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05276___yvdD-BPUM_3103.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05276___yvdD-BPUM_3103.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05276___yvdD
# 2: BPUM_3103
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 620
# Identity: 419/620 (67.6%)
# Similarity: 419/620 (67.6%)
# Gaps: 70/620 (11.3%)
# Score: 1382.0
#
#
#=======================================
BSNT_05276___ 1 ---------------TTGAAAACCATTTGTGTATTTGCGGGATCAAACCC 35
.|||||||.||||||||.|||||.||.||.||.||
BPUM_3103 1 ATGGAGCTGTTTTTGATGAAAACGATTTGTGTGTTTGCTGGTTCGAATCC 50
BSNT_05276___ 36 TGGGGGAAATGAAG--CGTATA-AAAGAAAA-GCGGCAGAGCTTGGCGTG 81
.||.| ||||| |||.|| |||||||| ||.|.||||||.||.|..
BPUM_3103 51 AGGCG----TGAAGGACGTCTACAAAGAAAAGGCTGTAGAGCTAGGGGCT 96
BSNT_05276___ 82 TATATGGCTGAGCAGGGAATCGGCCTTGTCTATGGGGGCTCCCGCGTCGG 131
||||||||.|||||.|..|||.|.|||||.||.||.||.||.||..|.||
BPUM_3103 97 TATATGGCAGAGCAAGACATCCGACTTGTATACGGCGGTTCACGAATTGG 146
BSNT_05276___ 132 CTTGATGGGCACGATTGCCGACGCGA--TTATGGAAAACGGCGGAACTGC 179
.||.|||||..|.|||||.||.|.|| |||.| |.|.||||| ||
BPUM_3103 147 ATTAATGGGTGCCATTGCAGATGAGATCTTAAG--ACATGGCGG----GC 190
BSNT_05276___ 180 A----ATCGGGGTCATGCCGAGCGGTTTGTTCAGCGGGGAGGTTGTCCAT 225
| ||.|||||.|||||.|..||..|.||.||.||.||.||.||.|||
BPUM_3103 191 AAGTCATTGGGGTGATGCCTAAAGGGCTTTTTAGAGGAGAAGTGGTGCAT 240
BSNT_05276___ 226 CAAAACCTGACTGAGCTGATTGAAGTAAACGGGATGCATGAACGAAAGGC 275
|||.|.|||||.||..|.||.|||||||..||.|||||.||||||||.||
BPUM_3103 241 CAAGAGCTGACAGAATTAATCGAAGTAACAGGAATGCACGAACGAAAAGC 290
BSNT_05276___ 276 TAAAATGAGCGAGCTGGCGGACGGCTTTATCTCGATGCCGGGCGGCTTCG 325
.||||||||.||||||||.||.||.|||||..|.|||||.||||||||.|
BPUM_3103 291 GAAAATGAGTGAGCTGGCTGATGGATTTATTGCAATGCCAGGCGGCTTTG 340
BSNT_05276___ 326 GTACATATGAAGAATTATTTGAAGTGCTGTGCTGGGCACAGATCGGCATC 375
||||||||||||||||||||||.|||||.||||||||.||.||||||||.
BPUM_3103 341 GTACATATGAAGAATTATTTGAGGTGCTATGCTGGGCTCAAATCGGCATT 390
BSNT_05276___ 376 CACCAAAAGCCAATCGGACTGTA-CAATGTAAACGGATATTTTGAACCAA 424
|||||||||||||||||..|||| ||| ||.||.|..|||||..|.||..
BPUM_3103 391 CACCAAAAGCCAATCGGCTTGTATCAA-GTGAATGACTATTTCAATCCGC 439
BSNT_05276___ 425 TGATGAAAATGGTGAAATACAGCATTCAAGAAGGGTTTTCTAACGAATCG 474
|.||..|.||||||||.|..||..|.||.|||||.|||||.||.|||||.
BPUM_3103 440 TTATAGACATGGTGAAGTTTAGTGTACAGGAAGGTTTTTCGAATGAATCA 489
BSNT_05276___ 475 CACCTAAAACTGATTCA------CAGCTCGTCACGG--CCGGATGAGTTA 516
||.||..||.||.|.|| |||| | |||||.||.|||
BPUM_3103 490 CATCTTCAATTGTTACATGCTTCCAGC--------GAACCGGAGGAATTA 531
BSNT_05276___ 517 ATTGAGCAAATGCAAAATTATTCTTAT------CCGATTTTAGAAAAAAA 560
|||...||.||| |.||||||| ||.|.|.|.||..|.||
BPUM_3103 532 ATTACACAGATG------TCTTCTTATCAAACACCAACTCTTGAGCAGAA 575
BSNT_05276___ 561 GTGGACAGAAATT----TAA 576
.||||| |.|.|| |||
BPUM_3103 576 ATGGAC-GGAGTTGTCGTAA 594
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