Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05188 and BPUM_3079
See
Amino acid alignment /
Visit
BSNT_05188 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05188___yveO.1.24716.seq
# -bsequence dna-align/BPUM_3079.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05188___yveO-BPUM_3079.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05188___yveO-BPUM_3079.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05188___yveO
# 2: BPUM_3079
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity: 547/953 (57.4%)
# Similarity: 547/953 (57.4%)
# Gaps: 223/953 (23.4%)
# Score: 1361.0
#
#
#=======================================
BSNT_05188___ 1 ATGAAC-----TCAGGACCGAAAGTTTCTGTCATTATGGGCATTTATAAT 45
.|||.| |.|| ||.||.||.|||.||||.||||||.|.||.|||
BPUM_3079 1 GTGAGCATGCGTAAG--CCAAAGGTGTCTATCATCATGGGCGTCTACAAT 48
BSNT_05188___ 46 TGCGAACGCACTTTGGCAGAAAGCATAGAATCCATTC-TCAGCCAATCCT 94
|||.||..|||..|.|.||||||.||.|||||||||| |||| |||.|.|
BPUM_3079 49 TGCCAAGACACAGTAGAAGAAAGTATTGAATCCATTCTTCAG-CAAACAT 97
BSNT_05188___ 95 ATAAAAATTGGGAGCTGATTTTGTGCGATGATGCGTCAACAGACGGCACG 144
||.|.||.||||||.|.||..|.||.|||||.||.|||||||||||||
BPUM_3079 98 ATGACAACTGGGAGTTCATCATATGTGATGACGCATCAACAGACGGCA-- 145
BSNT_05188___ 145 CTCCGTATCGCGAAGCAGTATGCCGCTCAT-TACA----GCGACTGCATC 189
|.||| |||..|| |||.| ||.| |||| |.||| |.|.
BPUM_3079 146 ---CCTAT---GAAAAAG--TGCTG-TCTTATACAAAACGAGAC--CCTG 184
BSNT_05188___ 190 AAA--------CTGATTCAAAA----CA-AAACAAATAAGCGGCTTGCCG 226
||| ||.||.|..|| || ||.|||| ||||.||.|
BPUM_3079 185 AAAGAATTCGCCTTATCCGCAATGAGCATAATCAAA-----GGCTCGCTG 229
BSNT_05188___ 227 CATCA--TTAAATCATTGTCTTTCGCATGCGACAGGCGATTATATCGCAC 274
| || .|.||||..|||||..|..|.||||..||.||.|..||.|||.
BPUM_3079 230 C--CAGTCTGAATCGCTGTCTAGCTGAAGCGAGGGGAGACTTGATTGCAA 277
BSNT_05188___ 275 GTCAGGACGGAGATGACCTTTCGTTTCCGCGCCGTCTGGAAAAGCAGGTC 324
|.|||||.||.||.||..|.||..|.||....|||.|.|||||.|||||
BPUM_3079 278 GGCAGGATGGCGACGATATATCAGTACCTGATCGTTTAGAAAAACAGGT- 326
BSNT_05188___ 325 GCGTTTT-TAGAAAAGCACCGACACTATCAGGTGGTTGGCACCGGC-ATG 372
||.|||| |.||||..||.|...|.|||.|.|||||.||.| |||| |||
BPUM_3079 327 GCATTTTCTTGAAACACATCCTGAATATGATGTGGTCGGGA-CGGCGATG 375
BSNT_05188___ 373 CTTGTGTTTGATGAATTTGG--CGTAAGAGGCACCCGCATTCTGCCTTCT 420
...|||||||||||||..|| |..|||..|.||..||| |||..|||.
BPUM_3079 376 ACCGTGTTTGATGAATCGGGTACAAAAGGTGTACGTGCA--CTGATTTCA 423
BSNT_05188___ 421 GTTCCGGAGC----CGGGCATCATGGCAAAAGGGACTCCATTTTGCCACG 466
|..||.||.| .|.|| ||||||.|||.||.||.|||||.||.|
BPUM_3079 424 GCGCCTGATCGAAAAGTGC----TGGCAAGAGGAACGCCTTTTTGTCATG 469
BSNT_05188___ 467 GCACGATTATGATGAGAGCGAGTGCCTACCGCACG---CTGAAAGGCTAC 513
|.||.|||||||||||.||...|||.|| ||.| .|.||.||.||.
BPUM_3079 470 GAACCATTATGATGAGGGCTGCTGCGTA---CAAGGATTTAAATGGATAT 516
BSNT_05188___ 514 CTGTCGGTG----CGGCGGACGAGACGAATGGAAGATATTGATTTGTGGC 559
|..||.||| | .|||||.||.|||||||||||.|||.|||||.
BPUM_3079 517 CGCTCTGTGAAAAC----AACGAGGCGGATGGAAGATATCGATCTGTGGA 562
BSNT_05188___ 560 TTCGCTTTTTTGAAGAGGGCTTCAGG-------GGCTATAATCTTCAGGA 602
||||.|||||| |||.|.|| ||||.||||.|.||.|
BPUM_3079 563 TTCGTTTTTTT-------GCTGCGGGGAGAAAAGGCTTTAATTTACAAG- 604
BSNT_05188___ 603 AGCCTTGTATA------AAGTGAGGGAAGACAGCGATGCATTCAAACGGC 646
||||.| |||| |||.|| |||.|| |||| ||.||..|.||.|
BPUM_3079 605 AGCCGT-TATACCTTGTAAGGGA-GGATGA-AGCG--GCTTTTCAGCGTC 649
BSNT_05188___ 647 GGTCA-TTTACGTATTCAATCGACAATGCCATTCTTGTCTATCAGGCGTG 695
||.| |||...|||||.||.||.|||| ||||.||
BPUM_3079 650 -GTAAGTTTCAATATTCGATAGATAATG-----CTTGGCT---------- 683
BSNT_05188___ 696 CAGACGCTT--GAAGCTTCCT--TTAT-----------CTGATTACATAT 730
||.|| .||||.|.|| |||| |.|||| ||| |
BPUM_3079 684 ----CGTTTTAAAAGCATGCTGGTTATTAAAATTGTCGCCGATT-CAT-T 727
BSNT_05188___ 731 ATAT-----CGCGAAA-CCGTTAATCCGCGCCTTTATGCCTGCAGCCGTG 774
||.| |||.||| ||..|..|||||||||.|.|
BPUM_3079 728 ATTTGTTTGCGCTAAAGCCTGTGGTCCGCGCCTGTTT------------- 764
BSNT_05188___ 775 ATGGATCGCTACCATAAAAAAAGAGTGATGA---------ACCAACAGGA 815
||| ||| ||||| |.|||| ||||.| |||
BPUM_3079 765 ----ATC---ACC------AAAGA-TCATGAAATTTTATCACCAGC-GGA 799
BSNT_05188___ 816 AG-----GGC----TTGTCAAGCATGAATAG------------------- 837
|| ||| |||| ||||.||
BPUM_3079 800 AGCTAGAGGCGTCTTTGT------TGAAAAGGAGGCCGATTCGCGATGAG 843
BSNT_05188___ 837 --- 837
BPUM_3079 844 TGA 846
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.