Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05186 and BPUM_3078

See Amino acid alignment / Visit BSNT_05186 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:51
# Commandline: needle
#    -asequence dna-align/BSNT_05186___yveP.1.24716.seq
#    -bsequence dna-align/BPUM_3078.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05186___yveP-BPUM_3078.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05186___yveP-BPUM_3078.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05186___yveP
# 2: BPUM_3078
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1246
# Identity:     760/1246 (61.0%)
# Similarity:   760/1246 (61.0%)
# Gaps:         206/1246 (16.5%)
# Score: 1887.0
# 
#
#=======================================

BSNT_05186___      1 ATGAATAGCAGCCAAAAGCGCGTGCTCCATGTTCTCAGCGGCATGAACAG     50
                     ||||.|  .|||| ||||||.||.||.|||.||.|..||||.||||||.|
BPUM_3078          1 ATGAGT--GAGCC-AAAGCGTGTCCTTCATATTGTGGGCGGGATGAACCG     47

BSNT_05186___     51 GGGCGGCGCGGAAACCATGGTAATGAATTTATATCGGAAGATGGACAAAA    100
                     .|||||.||.|||||.|||.|.|||||..|.|||||     ||.||...|
BPUM_3078         48 CGGCGGAGCTGAAACGATGATCATGAACATCTATCG-----TGCACTCGA     92

BSNT_05186___    101 GCAAAGTG-----CAATTTGATTTTTTAACGTATCGAAATGATCCGTGCG    145
                     .|.||.||     ||||||||.|||.|.||..|.||.||.|||...||.|
BPUM_3078         93 TCGAAATGTCCTTCAATTTGACTTTATTACCCACCGGAAGGATGTCTGTG    142

BSNT_05186___    146 CTTATGATGAAGAGATT--TTATCTTTAGGCGGGCGGCTTTTTTATGTCC    193
                     .|||||||||.||.|||  ..|.|  |.||.||.||..||||||||||||
BPUM_3078        143 ATTATGATGAGGAAATTCAGAAAC--TCGGTGGACGTATTTTTTATGTCC    190

BSNT_05186___    194 CGAGCATTGGGCAAAGC--AATCCCC--TTACATTTGTGAGGAATGTGAG    239
                     ||||.|||||    |||  ..|||||  ||.|||||||.||.|.|.|||.
BPUM_3078        191 CGAGTATTGG----AGCTTCCTCCCCTTTTGCATTTGTCAGAACTTTGAC    236

BSNT_05186___    240 AAACGCGATAA--AAGAAAAC-GGGCCGT-TCAGCGCCGTTCATGCGCAC    285
                     |||   ||.||  |||..||| ||.|||| ||| .||.||.|||||.||.
BPUM_3078        237 AAA---GACAATCAAGCGAACAGGACCGTATCA-AGCAGTGCATGCACAT    282

BSNT_05186___    286 ACGGATTTCCAAACGGGTTTTATC-GCCCTTGCGGCAAGGCTCGCCGGAG    334
                     ||.|||||.|||||.|| .||.|| ||||||||.||.|...|.||.||.|
BPUM_3078        283 ACAGATTTTCAAACAGG-CTTCTCTGCCCTTGCTGCGAAATTGGCGGGTG    331

BSNT_05186___    335 TGCCGGTCAGGGTATGCCACTCCCACAATACGTCTTGGAAGACCGGCTTC    384
                     ||..|||..|..|.||.||.||.||.|||||..||||||| ||.|.|..|
BPUM_3078        332 TGAAGGTACGTATTTGTCATTCGCATAATACTGCTTGGAA-ACAGTCGCC    380

BSNT_05186___    385 AACTGGAAGGATCG-CTTGCA---GCTGCTC----GTGTTCAGGCGGCTC    426
                     ||.||   ||||.| |   ||   |.|||||    |..||| |.|||||.
BPUM_3078        381 AAATG---GGATAGAC---CATATGATGCTCAAAGGATTTC-GCCGGCTG    423

BSNT_05186___    427 ATTTTGGCAAATGCGACAGCGCTGTG-TGCCTGCGGAGAGGATGCGGGCA    475
                     |||||.|||..|.|.|||..||| || |||.||.||.||||||||.||..
BPUM_3078        424 ATTTTTGCATTTTCTACAAAGCT-TGTTGCATGTGGTGAGGATGCCGGTG    472

BSNT_05186___    476 GGTTTTTATTTGGACAGTCCAATATGGAG-CGGGAGCGTGTTCACCTTCT    524
                     ..|||||||||||.|||...||.|||.|| ..||| |..|||.|..|.||
BPUM_3078        473 CCTTTTTATTTGGTCAGAAAAAAATGAAGAATGGA-CAGGTTGAGGTGCT    521

BSNT_05186___    525 TCCTAACGGGATTGA------CCTTGAGTTGTT--CGCC----CCAAATG    562
                     .||.||.||||||||      ||||   ||.||  .|||    |||.|.|
BPUM_3078        522 GCCGAATGGGATTGATTTATCCCTT---TTCTTTCAGCCTGATCCAGAAG    568

BSNT_05186___    563 GGCAGGCGGCTGATGAAGAAAAAGCAGCACGC--GGCATTGCAGCCGACC    610
                     ...|||       ||||||..|||.|||| ||  ||..|| ||  |||..
BPUM_3078        569 AAAAGG-------TGAAGATCAAGAAGCA-GCTAGGTCTT-CA--CGAAA    607

BSNT_05186___    611 GGCTCA---TCATCGGCCATGTGGCCCGGTTTCATGAAGTGAAAAACCAC    657
                     .|..||   |.||.||.|||.|.|.|||.|||||||||...|||||.|||
BPUM_3078        608 AGAGCATGGTGATAGGTCATATTGGCCGCTTTCATGAACAAAAAAATCAC    657

BSNT_05186___    658 GCGTTCCTGTTGAAACTTGCCGCACATCTCAAAGAAAGAGGCGTTCGC-T    706
                     |..||..|..||.||| ||.|.||.|.||.|||||...|||.|.||.| |
BPUM_3078        658 GTTTTTTTTATGGAAC-TGGCACAGACCTTAAAGAGGCAGGGGGTCTCAT    706

BSNT_05186___    707 TTCAGCTCGTTCTGGCGGGAGACGGGCCGTTG-CGCGGGGAG--------    747
                     |||||||.||.||.|..|||||.||.|||.|| .||.||..|        
BPUM_3078        707 TTCAGCTTGTCCTTGTAGGAGATGGACCGCTGAAGCAGGTGGTTGAATCG    756

BSNT_05186___    748 -ATAGAGGAGGAGGCGCGGCAGCAGAATTTGCTATCAGACGTCCTCTTTT    796
                      || |.|||..|||| ||||        |||.||...|||.|..|||||.
BPUM_3078        757 TAT-GCGGACAAGGC-CGGC--------TTGTTAGACGACATTGTCTTTA    796

BSNT_05186___    797 TAGGC-ACGGAAGAACGGA---TCCATGAACTGATGCGAACATTCGATGT    842
                     .|||| .||   .|.||||   |||| |||...|||..|.||||.|||||
BPUM_3078        797 CAGGCGTCG---TATCGGACATTCCA-GAATATATGAAAGCATTTGATGT    842

BSNT_05186___    843 ATTTGTCATGCCGTCTCTGTACGAAGG-CTTGCCGGTTGTGCTTGTGGAA    891
                     .|||||||||||.||..|||..||||| ||| |||.|.||..|.||||||
BPUM_3078        843 TTTTGTCATGCCTTCCTTGTTTGAAGGACTT-CCGCTCGTTTTAGTGGAA    891

BSNT_05186___    892 GCGCAGGCGTCGGGGCTTCCATGCATCATTTCAGA-CAGCATTACAGAAA    940
                     ||.|||||.||.||..|.||.||..|.|||||||| || .||||||||..
BPUM_3078        892 GCACAGGCATCTGGATTGCCTTGTGTGATTTCAGATCA-TATTACAGAGG    940

BSNT_05186___    941 AAGTCGACGCCGGTCT-CGGGCTTGTCACAAGATTAAGTC-TTTCTGAGC    988
                     ||||.|| ...||.|| |||.|||||.|.||||  |.||| .|||.|   
BPUM_3078        941 AAGTAGA-TTTGGGCTGCGGTCTTGTGAAAAGA--ATGTCGCTTCGG---    984

BSNT_05186___    989 CGA-TCAGCGTCTG---GGCTGAAACCATTGC---AAGGGCGGCCGCCGC   1031
                      || ||.|||..||   ||.||||..|..|||   |||      ||...|
BPUM_3078        985 -GATTCCGCGCATGAATGGATGAAGGCGGTGCTTGAAG------CGTATC   1027

BSNT_05186___   1032 AGGCAG-GCCGAAGCGTGAGTTCATCAACGAAACACT--CG-CTCAACTT   1077
                     |.|||| ||||        ..||.|||| ||.||..|  || |.||.|||
BPUM_3078       1028 ATGCAGAGCCG--------CCTCTTCAA-GAGACCATTACGTCCCAGCTT   1068

BSNT_05186___   1078 GGCTACGATGCACAGCAAAATGTAGGAGCGCTGCTGA----ATGT---AT   1120
                     |            |.||||      |||       ||    ||||   |.
BPUM_3078       1069 G------------AACAAA------GAG-------GATTTGATGTCAAAC   1093

BSNT_05186___   1121 ACAACATCAGCAC-----------GGAAAAGGACCATGACCGATGA   1155
                     |.||||||| |||           |||.|.||||..|.|       
BPUM_3078       1094 AGAACATCA-CACGTGTGATGAATGGATATGGACTGTAA-------   1131


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