Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05186 and BPUM_3078
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05186___yveP.1.24716.seq
# -bsequence dna-align/BPUM_3078.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05186___yveP-BPUM_3078.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05186___yveP-BPUM_3078.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05186___yveP
# 2: BPUM_3078
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1246
# Identity: 760/1246 (61.0%)
# Similarity: 760/1246 (61.0%)
# Gaps: 206/1246 (16.5%)
# Score: 1887.0
#
#
#=======================================
BSNT_05186___ 1 ATGAATAGCAGCCAAAAGCGCGTGCTCCATGTTCTCAGCGGCATGAACAG 50
||||.| .|||| ||||||.||.||.|||.||.|..||||.||||||.|
BPUM_3078 1 ATGAGT--GAGCC-AAAGCGTGTCCTTCATATTGTGGGCGGGATGAACCG 47
BSNT_05186___ 51 GGGCGGCGCGGAAACCATGGTAATGAATTTATATCGGAAGATGGACAAAA 100
.|||||.||.|||||.|||.|.|||||..|.||||| ||.||...|
BPUM_3078 48 CGGCGGAGCTGAAACGATGATCATGAACATCTATCG-----TGCACTCGA 92
BSNT_05186___ 101 GCAAAGTG-----CAATTTGATTTTTTAACGTATCGAAATGATCCGTGCG 145
.|.||.|| ||||||||.|||.|.||..|.||.||.|||...||.|
BPUM_3078 93 TCGAAATGTCCTTCAATTTGACTTTATTACCCACCGGAAGGATGTCTGTG 142
BSNT_05186___ 146 CTTATGATGAAGAGATT--TTATCTTTAGGCGGGCGGCTTTTTTATGTCC 193
.|||||||||.||.||| ..|.| |.||.||.||..||||||||||||
BPUM_3078 143 ATTATGATGAGGAAATTCAGAAAC--TCGGTGGACGTATTTTTTATGTCC 190
BSNT_05186___ 194 CGAGCATTGGGCAAAGC--AATCCCC--TTACATTTGTGAGGAATGTGAG 239
||||.||||| ||| ..||||| ||.|||||||.||.|.|.|||.
BPUM_3078 191 CGAGTATTGG----AGCTTCCTCCCCTTTTGCATTTGTCAGAACTTTGAC 236
BSNT_05186___ 240 AAACGCGATAA--AAGAAAAC-GGGCCGT-TCAGCGCCGTTCATGCGCAC 285
||| ||.|| |||..||| ||.|||| ||| .||.||.|||||.||.
BPUM_3078 237 AAA---GACAATCAAGCGAACAGGACCGTATCA-AGCAGTGCATGCACAT 282
BSNT_05186___ 286 ACGGATTTCCAAACGGGTTTTATC-GCCCTTGCGGCAAGGCTCGCCGGAG 334
||.|||||.|||||.|| .||.|| ||||||||.||.|...|.||.||.|
BPUM_3078 283 ACAGATTTTCAAACAGG-CTTCTCTGCCCTTGCTGCGAAATTGGCGGGTG 331
BSNT_05186___ 335 TGCCGGTCAGGGTATGCCACTCCCACAATACGTCTTGGAAGACCGGCTTC 384
||..|||..|..|.||.||.||.||.|||||..||||||| ||.|.|..|
BPUM_3078 332 TGAAGGTACGTATTTGTCATTCGCATAATACTGCTTGGAA-ACAGTCGCC 380
BSNT_05186___ 385 AACTGGAAGGATCG-CTTGCA---GCTGCTC----GTGTTCAGGCGGCTC 426
||.|| ||||.| | || |.||||| |..||| |.|||||.
BPUM_3078 381 AAATG---GGATAGAC---CATATGATGCTCAAAGGATTTC-GCCGGCTG 423
BSNT_05186___ 427 ATTTTGGCAAATGCGACAGCGCTGTG-TGCCTGCGGAGAGGATGCGGGCA 475
|||||.|||..|.|.|||..||| || |||.||.||.||||||||.||..
BPUM_3078 424 ATTTTTGCATTTTCTACAAAGCT-TGTTGCATGTGGTGAGGATGCCGGTG 472
BSNT_05186___ 476 GGTTTTTATTTGGACAGTCCAATATGGAG-CGGGAGCGTGTTCACCTTCT 524
..|||||||||||.|||...||.|||.|| ..||| |..|||.|..|.||
BPUM_3078 473 CCTTTTTATTTGGTCAGAAAAAAATGAAGAATGGA-CAGGTTGAGGTGCT 521
BSNT_05186___ 525 TCCTAACGGGATTGA------CCTTGAGTTGTT--CGCC----CCAAATG 562
.||.||.|||||||| |||| ||.|| .||| |||.|.|
BPUM_3078 522 GCCGAATGGGATTGATTTATCCCTT---TTCTTTCAGCCTGATCCAGAAG 568
BSNT_05186___ 563 GGCAGGCGGCTGATGAAGAAAAAGCAGCACGC--GGCATTGCAGCCGACC 610
...||| ||||||..|||.|||| || ||..|| || |||..
BPUM_3078 569 AAAAGG-------TGAAGATCAAGAAGCA-GCTAGGTCTT-CA--CGAAA 607
BSNT_05186___ 611 GGCTCA---TCATCGGCCATGTGGCCCGGTTTCATGAAGTGAAAAACCAC 657
.|..|| |.||.||.|||.|.|.|||.|||||||||...|||||.|||
BPUM_3078 608 AGAGCATGGTGATAGGTCATATTGGCCGCTTTCATGAACAAAAAAATCAC 657
BSNT_05186___ 658 GCGTTCCTGTTGAAACTTGCCGCACATCTCAAAGAAAGAGGCGTTCGC-T 706
|..||..|..||.||| ||.|.||.|.||.|||||...|||.|.||.| |
BPUM_3078 658 GTTTTTTTTATGGAAC-TGGCACAGACCTTAAAGAGGCAGGGGGTCTCAT 706
BSNT_05186___ 707 TTCAGCTCGTTCTGGCGGGAGACGGGCCGTTG-CGCGGGGAG-------- 747
|||||||.||.||.|..|||||.||.|||.|| .||.||..|
BPUM_3078 707 TTCAGCTTGTCCTTGTAGGAGATGGACCGCTGAAGCAGGTGGTTGAATCG 756
BSNT_05186___ 748 -ATAGAGGAGGAGGCGCGGCAGCAGAATTTGCTATCAGACGTCCTCTTTT 796
|| |.|||..|||| |||| |||.||...|||.|..|||||.
BPUM_3078 757 TAT-GCGGACAAGGC-CGGC--------TTGTTAGACGACATTGTCTTTA 796
BSNT_05186___ 797 TAGGC-ACGGAAGAACGGA---TCCATGAACTGATGCGAACATTCGATGT 842
.|||| .|| .|.|||| |||| |||...|||..|.||||.|||||
BPUM_3078 797 CAGGCGTCG---TATCGGACATTCCA-GAATATATGAAAGCATTTGATGT 842
BSNT_05186___ 843 ATTTGTCATGCCGTCTCTGTACGAAGG-CTTGCCGGTTGTGCTTGTGGAA 891
.|||||||||||.||..|||..||||| ||| |||.|.||..|.||||||
BPUM_3078 843 TTTTGTCATGCCTTCCTTGTTTGAAGGACTT-CCGCTCGTTTTAGTGGAA 891
BSNT_05186___ 892 GCGCAGGCGTCGGGGCTTCCATGCATCATTTCAGA-CAGCATTACAGAAA 940
||.|||||.||.||..|.||.||..|.|||||||| || .||||||||..
BPUM_3078 892 GCACAGGCATCTGGATTGCCTTGTGTGATTTCAGATCA-TATTACAGAGG 940
BSNT_05186___ 941 AAGTCGACGCCGGTCT-CGGGCTTGTCACAAGATTAAGTC-TTTCTGAGC 988
||||.|| ...||.|| |||.|||||.|.|||| |.||| .|||.|
BPUM_3078 941 AAGTAGA-TTTGGGCTGCGGTCTTGTGAAAAGA--ATGTCGCTTCGG--- 984
BSNT_05186___ 989 CGA-TCAGCGTCTG---GGCTGAAACCATTGC---AAGGGCGGCCGCCGC 1031
|| ||.|||..|| ||.||||..|..||| ||| ||...|
BPUM_3078 985 -GATTCCGCGCATGAATGGATGAAGGCGGTGCTTGAAG------CGTATC 1027
BSNT_05186___ 1032 AGGCAG-GCCGAAGCGTGAGTTCATCAACGAAACACT--CG-CTCAACTT 1077
|.|||| |||| ..||.|||| ||.||..| || |.||.|||
BPUM_3078 1028 ATGCAGAGCCG--------CCTCTTCAA-GAGACCATTACGTCCCAGCTT 1068
BSNT_05186___ 1078 GGCTACGATGCACAGCAAAATGTAGGAGCGCTGCTGA----ATGT---AT 1120
| |.|||| ||| || |||| |.
BPUM_3078 1069 G------------AACAAA------GAG-------GATTTGATGTCAAAC 1093
BSNT_05186___ 1121 ACAACATCAGCAC-----------GGAAAAGGACCATGACCGATGA 1155
|.||||||| ||| |||.|.||||..|.|
BPUM_3078 1094 AGAACATCA-CACGTGTGATGAATGGATATGGACTGTAA------- 1131
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