Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05185 and BPUM_3077
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05185___yveQ.1.24716.seq
# -bsequence dna-align/BPUM_3077.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05185___yveQ-BPUM_3077.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05185___yveQ-BPUM_3077.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05185___yveQ
# 2: BPUM_3077
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1154
# Identity: 756/1154 (65.5%)
# Similarity: 756/1154 (65.5%)
# Gaps: 100/1154 ( 8.7%)
# Score: 2205.5
#
#
#=======================================
BSNT_05185___ 1 ATGATTGTATATGCCGTTAATATGGGGAT--TGTATTTATTTGGTCTTGG 48
|||...||||||...||.||.|||...|| |.|||||| |||||..|.
BPUM_3077 1 ATGGCGGTATATTTGGTGAACATGATCATGGTCTATTTA--TGGTCGAGC 48
BSNT_05185___ 49 TTCGCTAAAATGTGCGGCGGCCGTGACGATTCGCTTGCCACGGGGTAT-- 96
||.|||..|.|.|.||||.|.||.||.|||.|..|| ||..|.|.||
BPUM_3077 49 TTTGCTGCATTTTACGGCAGGCGAGATGATACCATT--CAAAGCGGATGG 96
BSNT_05185___ 97 CGGCCGAATAAGCTTTTGATCTGGATTCCG--CTCGCTTCACTTGTGCTC 144
||.||.||.|||.||.|..|.|...||||| .|.|.||| .|||| .|.
BPUM_3077 97 CGACCTAACAAGATTCTCGTGTTATTTCCGTTTTTGTTTC-TTTGT-ATT 144
BSNT_05185___ 145 GTGTCAGGTCTCCGCTATCGAGTCGGCACGGATTTTCAGACGT----ACA 190
||..|.|||.|.||.||...|||.||.||.||||||...|||| |||
BPUM_3077 145 GTCGCTGGTATTCGGTACAAAGTAGGAACCGATTTTGTCACGTATGGACA 194
BSNT_05185___ 191 CGCTGCTGTACGAATTGGCGGGCGATTATCAAAATGTGTGGCAGATATTC 240
|.||||.||.||..|.|.|.|||||.||||....|||||.||.|||
BPUM_3077 195 ----GATGTATGAGTTCTCCGTCAATTATGAAAAGCCTTGGCATATCTTC 240
BSNT_05185___ 241 GGTTTCGGCACAGCGAAAACAGCGACAGATCCGGGGTTTACCGCATTCCT 290
||.||.||....|..||..|.||.||.||.||.||.|||| |.||..|
BPUM_3077 241 GGATTTGGTGTGGATAAGGCGGCCACTGACCCAGGATTTA---CGTTTAT 287
BSNT_05185___ 291 T---TGGCTGATGAATTTCATCACGG----AAGATCCTCAAATCATGTAT 333
| |||.||.|.|| ||| ||.| |.|||||.|||||.||||||
BPUM_3077 288 TTTATGGATGCTCAA--TCA--ACTGTCCCATGATCCGCAAATTATGTAT 333
BSNT_05185___ 334 TTTACGGT---GGCGGTCGTGACCTACAGCTTTATTATGAAGACACTCGC 380
.|..|.|| ||||.|| |||||....|||||.||.|||||.|||..
BPUM_3077 334 ATCTCAGTTGGGGCGATC---ACCTATTTTTTTATCATCAAGACGCTCAT 380
BSNT_05185___ 381 CGACTATGGCAGGCCGTTTGAGCTGAGTGT-CTTTTTGTTTTTGGGAACC 429
..|.||||||.|.||.||||||||.|||.| ||..|| |||.|.||.|||
BPUM_3077 381 TCAATATGGCCGTCCCTTTGAGCTAAGTATGCTGCTT-TTTCTCGGCACC 429
BSNT_05185___ 430 TTTCATTACTACGCGTCTTTTAACGGCATCAGGCAATACATGGTGGCAGC 479
||||||||.|||||.||.|||||.|||||..|.|||||.||||||||.||
BPUM_3077 430 TTTCATTATTACGCTTCGTTTAATGGCATGCGTCAATATATGGTGGCGGC 479
BSNT_05185___ 480 TGTTTTGTTTTGGGCGGTCCGTTAT---ATCA----TCAGCGGGAACTGG 522
..||.|.||||..||..|||||..| |||| ||||.||.||.||
BPUM_3077 480 GATTCTTTTTTATGCCATCCGTCTTGTGATCAATGGTCAGTGGAAATTG- 528
BSNT_05185___ 523 AAGCGATATTTCCTGATTGTGCTGGTCAGCTCGCTCTTTCATTCGTCGGC 572
|||||.|.|.||||.||.||..|.||..|.||||||||.|||||
BPUM_3077 529 ------TATTTTCCGCTTGTCCTCGTATGTTCCTTGTTTCATTCATCGGC 572
BSNT_05185___ 573 GCTGATTATGATTCCGGTGTACTTTATTGTCAGAAGAAAAGCCTGGTCTC 622
.||.||.||||||||.|||||.|||||.||.||||..|||.|.||||
BPUM_3077 573 TCTTATCATGATTCCTGTGTATTTTATCGTGAGAACTAAATCGTGGT--- 619
BSNT_05185___ 623 CGGCGAT-ATTCGGCCTATCCGCTTTGT-TTCTCGGCATGACATTTTTA- 669
||..||| ||.| |||| ||.| ||||||..||.|||
BPUM_3077 620 CGTGGATGATGC------------TTGTCTTAT--GCATGATTTTCTTAG 655
BSNT_05185___ 670 --------------TATCAAAAATTTATTTCTGTGTTTGTCGTTGTACTT 705
|||.|....|||.||||.|||||||||||..|.||.
BPUM_3077 656 GGTTAACCGCTCTTTATGACCGCTTTGTTTCCGTGTTTGTCGTGATGCTA 705
BSNT_05185___ 706 GAAAACAGCTCATACAGCCATTATGAAAAATGGCTCATGACGAACACAAA 755
.|...|||.|||||..|.|||||.||..|||||||||..|||||.|||||
BPUM_3077 706 CAGGGCAGTTCATATGGGCATTACGAGGAATGGCTCACAACGAATACAAA 755
BSNT_05185___ 756 TGGAATGAATGTGATCAAAATCGCTGTGTTGGTTCTGCCGCTGTTCCTTG 805
||||||||||||||..|||||||.|||.|||.||.|||||||.||.||||
BPUM_3077 756 TGGAATGAATGTGACAAAAATCGGTGTATTGATTTTGCCGCTTTTGCTTG 805
BSNT_05185___ 806 CATTTTGCTATAAAGAACGACTGCG-GAGTCTGTGGCCGCAAATTGATAT 854
|.||.|..|||..|.||||.||.|| ||| |||..|||..|.|.||||..
BPUM_3077 806 CCTTCTTTTATCGAAAACGGCTTCGTGAG-CTGACGCCAGAGAGTGATTA 854
BSNT_05185___ 855 TGTCGTCAATTTGTGCCTGCTAGGTTTTTTGTTCGGCCTTTTGGCCACAA 904
.||.||.|||||.||..||||.|||||.|||||.|||.|..|.|||||||
BPUM_3077 855 CGTTGTGAATTTTTGTTTGCTCGGTTTCTTGTTTGGCATCCTTGCCACAA 904
BSNT_05185___ 905 AGGACGTGATTTTTGCCAGATTCAATATTTATTTCGGTCTGTATCAAATG 954
||||.||.||||.|||.|||||..||||.|||||.|||.|||||||..|.
BPUM_3077 905 AGGATGTCATTTATGCAAGATTTCATATCTATTTTGGTTTGTATCAGCTT 954
BSNT_05185___ 955 ATCCTAGTCCCTTATTTCGTCA-GGATATTTGATGAAAAATCGAACGCTC 1003
||..||.|.||.|||||| .|| |.||.||||||.|....||.||.| ||
BPUM_3077 955 ATTTTACTGCCATATTTC-ACACGTATTTTTGATCAGCGGTCTAATG-TC 1002
BSNT_05185___ 1004 -TTATCTATATCGCTATCGTTGTTTGTTATTTTCTTTACAG--TTATTTG 1050
||||||||.|.|..||.|.||||||.|||.||||.||||| |.| ||
BPUM_3077 1003 TTTATCTATGTAGGGATTGCTGTTTGCTATATTCTGTACAGCATCA--TG 1050
BSNT_05185___ 1051 CTTATGCCGGTCGATTCATCGGTTCTGCCTTACAGAACGATTTTTTCCCG 1100
||.||||||.||||||||||.||..||||.||.||.|||||.|||.|...
BPUM_3077 1051 CTGATGCCGTTCGATTCATCTGTGTTGCCGTATAGGACGATATTTACAAA 1100
BSNT_05185___ 1101 GTAA 1104
|||.
BPUM_3077 1101 GTAG 1104
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