Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05183 and BPUM_3076
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05183___yveR.1.24716.seq
# -bsequence dna-align/BPUM_3076.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05183___yveR-BPUM_3076.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05183___yveR-BPUM_3076.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05183___yveR
# 2: BPUM_3076
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1218
# Identity: 645/1218 (53.0%)
# Similarity: 645/1218 (53.0%)
# Gaps: 378/1218 (31.0%)
# Score: 1433.0
#
#
#=======================================
BSNT_05183___ 1 ATGGAAAC-ATCTGCGGTTAGTCTGTTAGTCGCTGTTTATAACACAGAAA 49
|||..|.| ||| |||||.||.|||||.||.||.||.|| ||..
BPUM_3076 1 ATGCCAGCTATC-------AGTCTATTGGTCGCAGTCTACAATAC-GAGT 42
BSNT_05183___ 50 CATATATCAGAACGTGTCTCG-AATCCCTGCGGAACCAGACAGTGGA--- 95
|| ||||..|.| | |||.|||.| ||.|| |..||.||
BPUM_3076 43 CA-ATATTTGGA--------GCAATGCCTTC--AATCA-ATTGTAGATCA 80
BSNT_05183___ 96 --------CA-ATATTGAAATCATCATCGTCAATGACGGTTCTCAAGA-C 135
|| |||||||..||||..||||.|||||.||.|||..||| |
BPUM_3076 81 AAGTTTTTCAGATATTGAGGTCATTCTCGTGAATGATGGATCTACAGATC 130
BSNT_05183___ 136 GCCAGCCCGG---ATATCGCAGAAGAATACGC----CAAAATGGACAACA 178
| .|| ||| ||||| ..||||.||..|| |||.|| ||.|
BPUM_3076 131 G-TAG--CGGAGAATATC-TTGAAGCATTTGCTGCGCAAGAT---CAGC- 172
BSNT_05183___ 179 GGTTCAAGGTGATTCATCAGGAGAACC-----AGGGTCTCGGTGCGGTTC 223
||||...|||.|||||||| |||| ||||| |.||.||.||
BPUM_3076 173 GGTTTCGGGTCATTCATCA----AACCAATCAAGGGT-TAGGCGCTGT-- 215
BSNT_05183___ 224 GGAATAAA----GGCATTGAGGCAGCACGCGGCGAATTTATCGCGTTTAT 269
.|.||| |||||.||.|.||||...|||...|.|||.||.|||||
BPUM_3076 216 --GAGAAACCGGGGCATCGAAGAAGCAAAGGGCACGTATATTGCCTTTAT 263
BSNT_05183___ 270 CGATTCAGACGATTGGATCGAACCTGATTATTGCGA----------GCAG 309
.||||||||||||....|||.|||..||||.||||| |.|.
BPUM_3076 264 TGATTCAGACGATGTTCTCGCACCACATTACTGCGAAGCCTTATATGAAA 313
BSNT_05183___ 310 ATGCT-------CCGG-GCAG----------CAGGCGATGAA-ACTGATC 340
|.||| |||| |||| ||| |||| ||||
BPUM_3076 314 AAGCTAAAATGACCGGCGCAGATCTAGTAATCAG----TGAATACTG--- 356
BSNT_05183___ 341 TGGTCATTTGCAATTATGCCGCAGAGTTTGAGGACACTGGCAAA------ 384
.||| ||| ||||| ||.|.||||
BPUM_3076 357 ----GATT--CAA-------------TTTGA----ACAGTCAAAGCGAAC 383
BSNT_05183___ 385 ---ACCATGGACTCTGACATTGCCCAAACCTATCAGGATCAGCCGAAGGA 431
||||..|||.||| ||..||.|.| |||||||||||
BPUM_3076 384 CATACCAACGACGCTG---TTAGCCGAGC-------GATCAGCCGAA--- 420
BSNT_05183___ 432 GCACTATATCAAG----------GCGTTATTCGAAGGGA-AGGTCAGAGG 470
|.|.|||| |||||||| |.|.||| |..|||..||
BPUM_3076 421 -----AAAACAAGTTTAATTGAAGCGTTATT-GCACGGAGACATCACGGG 464
BSNT_05183___ 471 GTTTTCATGGAACAAACTGTA---------------CAGAAGAAGCATGA 505
|||.||||||||.||.||||| | |||||| ||.||
BPUM_3076 465 GTTCTCATGGAATAAGCTGTATCGGCGTGCCTTTATC-GAAGAA-CACGA 512
BSNT_05183___ 506 TTGAAGCCCATCGGCTGTCG-TTTCCGCTCCGAGGCGAGCTGGAGCATGT 554
|||| || ||||||||..|.||.||.||.|||.|..|
BPUM_3076 513 --------CATC------CGATTTCCGCTGAGGGGGGAACTTGAGAACAT 548
BSNT_05183___ 555 CGAGGATCA-----------------GTTTTTCAGCTTCAGGGCTCACTT 587
.||.||||| |||||| |||
BPUM_3076 549 AGAAGATCAATATGTGACGCTGCGCTGTTTTT---------------CTT 583
BSNT_05183___ 588 TTTCGCCCGCTCAGTAT--CCTACGT--AAAAACGCCGCTCTATCATTAT 633
|.||.|.|| |.|| |||..|| |..|| ||.||.|||.|.||.
BPUM_3076 584 TATCACGCG----GCATTGCCTTTGTTCATGAA--CCTCTTTATTACTAC 627
BSNT_05183___ 634 CGAATTCACCTTTCCTCCATTGTGCAGCGCTATCAGAAAAAATTGTTTGA 683
||..|.||.||.||.||.||||||||.||.|||||| ||..|.|.|||..
BPUM_3076 628 CGGGTCCATCTGTCTTCTATTGTGCAACGATATCAG-AAGCAGTATTTTC 676
BSNT_05183___ 684 ATCA-GGACTTGCGCTGTATGAGGCGAATGCGGC--GTTTTT-ACAG--- 726
|||| |||||..|..|.|||.|.|||.| || || |||||| ||||
BPUM_3076 677 ATCATGGACTCACTTTTTATCATGCGCA-GC-GCTTGTTTTTGACAGAAT 724
BSNT_05183___ 727 --GAGAACAACAAACTGGAGGAGTATCGCAAGGAGCTTGATACCTTTATC 774
||..|||.|....||.|.||| ||||..||||||...|||||.
BPUM_3076 725 ATGATGACATCTCTTTGTATGAG------AAGGCACTTGATTTTTTTATT 768
BSNT_05183___ 775 GTTCTTCACAGCAGCATC--TGCATGCTGAATGAATGGAAAACGAGC--- 819
||...|||.|.| |.|| ||.|||||.||.|||||||| ||||
BPUM_3076 769 GTCAATCATACC--CTTCATTGTATGCTCAACGAATGGAA---GAGCCAA 813
BSNT_05183___ 820 --GGCAGCCGC----CGGCTGTTTGAAAAGCTTAGAAATGTTGGCGTGAT 863
.|||..|.| ||| |||||.||| || |.|.
BPUM_3076 814 AATGCACTCTCTCTTCGG------GAAAAACTT-GA----------TCAC 846
BSNT_05183___ 864 ATGCGCGGACCCGGTG------------TTTCAAGAAAGT-CTTTCAAA- 899
||||| |||...|||| |||||.|| | ||.|||||
BPUM_3076 847 ATGCG-GGAAATGGTGACACACGAGGCTTTTCAGGA---TGCTGTCAAAC 892
BSNT_05183___ 900 AACGGGTACCGCTCCTTTTGACACAAAACGGTCATGCCTG-CTTCTGATG 948
||..||.||| |.|| |.| ||| |||||
BPUM_3076 893 AAGTGGAACC----------------ATCG---AAG-CTGACTTCT---- 918
BSNT_05183___ 949 GCGAAATACAGAATGATTCCGTTCGTCGCGATG-GCATCGGCT-GTGTAT 996
|||| |..||||||||...|||.|.||||.| || ||||| ||.|||
BPUM_3076 919 -CGAA--AGCGAATGATTTTATTCCTTGCGAAGTGC--CGGCTGGTCTAT 963
BSNT_05183___ 997 ----------CAGCGGGT-----------------GATCGAGTA-CAAA- 1017
|.||.|.| ||||||.|| ||||
BPUM_3076 964 CCACTATCTGCCGCCGCTTCTAGCTATCAAAAATGGATCGAATATCAAAC 1013
BSNT_05183___ 1018 ATGAGAAACAGAGGGTGA 1035
|.| ||||.||
BPUM_3076 1014 AAG-GAAATAG------- 1023
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