Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05182 and BPUM_3075

See Amino acid alignment / Visit BSNT_05182 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:50
# Commandline: needle
#    -asequence dna-align/BSNT_05182___yveS.1.24716.seq
#    -bsequence dna-align/BPUM_3075.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05182___yveS-BPUM_3075.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05182___yveS-BPUM_3075.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05182___yveS
# 2: BPUM_3075
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity:     689/1206 (57.1%)
# Similarity:   689/1206 (57.1%)
# Gaps:         312/1206 (25.9%)
# Score: 1897.0
# 
#
#=======================================

BSNT_05182___      1 ATGTCGTTACAATCGTTGAAA----ATCAATT-----------TTGCAGA     35
                                    ||||.|    |.|||||           ..|||||
BPUM_3075          1 ---------------TTGACATTGCAGCAATTGAAGGCGCACGCCGCAGA     35

BSNT_05182___     36 ATGGCTGCTGCTAAAGGTCAAATACCCGTCC----CAATATTGGCTGGGA     81
                     .||||||||..|||||||.|||||    |||    .||||          
BPUM_3075         36 GTGGCTGCTCTTAAAGGTTAAATA----TCCACTTGAATA----------     71

BSNT_05182___     82 GCGGCAGA-TCAGCCGGTAAAG---GCCGCAGC----ACATCAGAAAAAA    123
                         |.|| |.|||||..||||   |||..|||    .||||||||.|||
BPUM_3075         72 ----CCGACTAAGCCGCCAAAGCCTGCCAGAGCGAAGTCATCAGAAGAAA    117

BSNT_05182___    124 ATCATACTGACCCTGCTGCCGTCCCATGACAATTTGGGAGATCACGCAAT    173
                     |||||.||.||.||||||||....|||||.|||||.||.|||||.||.||
BPUM_3075        118 ATCATTCTCACGCTGCTGCCAGGGCATGATAATTTAGGCGATCATGCCAT    167

BSNT_05182___    174 TGCTTATGCCAGCAA--GGCATTTCTTGAGCAAGAATAC---CCGGACTT    218
                     |||.|||||.||..|  |   |||.||.|  ||||..||   ||.|.||.
BPUM_3075        168 TGCCTATGCGAGTTATTG---TTTTTTAA--AAGAGCACTTTCCCGCCTA    212

BSNT_05182___    219 TGACATCGTCGAGGTTGATATGAAGGACATTTACAAATCAGCAAAAAGCC    268
                     .||.|||.|.||.||.||.|||||.||.||.|    |||        |||
BPUM_3075        213 CGATATCATGGAAGTGGACATGAAAGAGATCT----ATC--------GCC    250

BSNT_05182___    269 TGATCCGCTC-------------GCGCCATCCGGAGGATATGGTCTTTAT    305
                     |...||| ||             |||.|||||.|||||.||.||.|.|||
BPUM_3075        251 TCGCCCG-TCCGTTAAAGCGTATGCGGCATCCAGAGGACATCGTTTGTAT    299

BSNT_05182___    306 CATCGGCGGCGGAAACATGGGGGATATATACCGTTATGAGGAGTGGACGC    355
                     ||||||.||.||.||.|||||.||..|||||||||||||.||.||||||.
BPUM_3075        300 CATCGGTGGGGGCAATATGGGAGACTTATACCGTTATGAAGAATGGACGA    349

BSNT_05182___    356 GCCGCTTCATCATTAAAACATTCCATGACTATCGGGTTGTCCAGCTTCCG    405
                     |.|..||.|||||.|||||.|||.|...|||.|..||..|.||..|.|||
BPUM_3075        350 GACAATTTATCATGAAAACCTTCAAGTCCTACCCCGTGATTCAATTGCCG    399

BSNT_05182___    406 GCAACGGCTCATTTTTCTGACACGAAAAAAGGGCGCAAAGAGCTGAA--A    453
                     |||||.|..||||||.|.||.||  |||.||.|.|.||||||..|||  .
BPUM_3075        400 GCAACTGTCCATTTTACAGAAAC--AAAGAGAGGGAAAAGAGAGGAACGC    447

BSNT_05182___    454 CGGGC-------ACAGA-AAATTTATAATGCGCACC--CC--GGCCTGTT    491
                     ||.||       |||.| |||           ||||  ||  || |||.|
BPUM_3075        448 CGCGCCATTCAAACATACAAA-----------CACCATCCAAGG-CTGCT    485

BSNT_05182___    492 GCTGATGGCGCGGGATGAAACAACGTATCAATT-TATGAAACAGCATTT-    539
                     .||.|||||..|.|||.|||||||.|| ||.|| .|||||||||||.|| 
BPUM_3075        486 TCTCATGGCAAGAGATCAAACAACCTA-CACTTGGATGAAACAGCACTTC    534

BSNT_05182___    540 -----TCAAGAAAAAACAATTTTGAAGCAGCCGGACATGGTGCTGTATTT    584
                          ||||||      ..|.|.|||.|||||.||.|||||||||...||
BPUM_3075        535 CCTGATCAAGA------TGTATGGAAACAGCCTGATATGGTGCTGACATT    578

BSNT_05182___    585 AGATAGAAGC----AAG--ACCCCCGCAGAACGCGAAGGGGTT-TATATG    627
                     |||| |||.|    |||  ||     ||.||||.||||||||| || .|.
BPUM_3075        579 AGAT-GAATCGACTAAGGAAC-----CAAAACGTGAAGGGGTTCTA-CTT    621

BSNT_05182___    628 TGTTTGCGCGAGGATCAGGAAAGCGTGCTTC-------AGGAGGAGCAGA    670
                     ||||||||.||||||.||| ||||||...||       |||||..|||| 
BPUM_3075        622 TGTTTGCGAGAGGATAAGG-AAGCGTATCTCACTGAAAAGGAGCGGCAG-    669

BSNT_05182___    671 GGAACCGAGTCAAAGCTGCGTTATTTGAGGAATTC-AGCGA-----GATC    714
                           .||..|||||.||.|          |||| ||.||     ||||
BPUM_3075        670 ------CAGCTAAAGCAGCAT----------ATTCAAGAGACGTATGATC    703

BSNT_05182___    715 AAACCCTTT--------ACGACAA-------------CGATCGGGCGCCG    743
                     .|..|..||        |||||||             .|||||..||   
BPUM_3075        704 CAGTCGGTTTGATTACAACGACAATTGGCAAACGAGTTGATCGAACG---    750

BSNT_05182___    744 GGTCAGCCGCGATACACGCGAACAAGAACTTGAA------GCGCTGTGGT    787
                                  ||.|||   |.|||   ||||      |||.|.|||.
BPUM_3075        751 -------------ACTCGC---CTAGA---TGAATTATCTGCGTTATGGA    781

BSNT_05182___    788 CTAAGCT--GCAAAGCGCAGAAGCCGTCGTCACTGACAGGCTTCATGGCA    835
                     |..||.|  |.||.||||||  |.|||||||||.||..|||||||.||.|
BPUM_3075        782 CAGAGTTACGTAAGGCGCAG--GTCGTCGTCACAGATCGGCTTCACGGTA    829

BSNT_05182___    836 TGATTTTTTGCGCGCTGACAGGAACGCCGTGTGTTGTCATTCGCTCCTTT    885
                     ||||||||||.|||.|.|||..|||.||||||||||||.|..|.||.|||
BPUM_3075        830 TGATTTTTTGTGCGATTACAAAAACACCGTGTGTTGTCCTCAGGTCGTTT    879

BSNT_05182___    886 GACCATAAGGTGATGGAGGGCTATCAATGGCTTAAAG--ACATC--CCGT    931
                     ||.||||||||||||||.||.|||.|||||.|    |  |||||  ||.|
BPUM_3075        880 GATCATAAGGTGATGGAAGGGTATGAATGGGT----GGCACATCTTCCTT    925

BSNT_05182___    932 TCATGAAGC---TGATAGAACATCCG---GAGCCAGAGCGCGTAACAGCC    975
                     |..|||.||   |||.||||   |||   |||.| ||..|.|.||.||.|
BPUM_3075        926 TTTTGACGCTATTGAAAGAA---CCGAATGAGGC-GACTGTGAAAGAGGC    971

BSNT_05182___    976 GCAGTCAATGAGCTTTTAACAAAAGAAACACCCCGTGCAGGCTTTCCGAG   1025
                     | |.|||        |.|||..|.||||                 .||||
BPUM_3075        972 G-ATTCA--------TCAACTGATGAAA-----------------ACGAG    995

BSNT_05182___   1026 AGATGTGTATTTTAAAGGTCTGCGTGACAAAATCAGCGG----TGAAGCG   1071
                     .|                       |||||||     ||    .|||||.
BPUM_3075        996 CG-----------------------GACAAAA-----GGGAGAGGAAGCT   1017

BSNT_05182___   1072 CAATGA   1077
                     ..||||
BPUM_3075       1018 GGATGA   1023


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