Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05182 and BPUM_3075
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05182___yveS.1.24716.seq
# -bsequence dna-align/BPUM_3075.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05182___yveS-BPUM_3075.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05182___yveS-BPUM_3075.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05182___yveS
# 2: BPUM_3075
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity: 689/1206 (57.1%)
# Similarity: 689/1206 (57.1%)
# Gaps: 312/1206 (25.9%)
# Score: 1897.0
#
#
#=======================================
BSNT_05182___ 1 ATGTCGTTACAATCGTTGAAA----ATCAATT-----------TTGCAGA 35
||||.| |.||||| ..|||||
BPUM_3075 1 ---------------TTGACATTGCAGCAATTGAAGGCGCACGCCGCAGA 35
BSNT_05182___ 36 ATGGCTGCTGCTAAAGGTCAAATACCCGTCC----CAATATTGGCTGGGA 81
.||||||||..|||||||.||||| ||| .||||
BPUM_3075 36 GTGGCTGCTCTTAAAGGTTAAATA----TCCACTTGAATA---------- 71
BSNT_05182___ 82 GCGGCAGA-TCAGCCGGTAAAG---GCCGCAGC----ACATCAGAAAAAA 123
|.|| |.|||||..|||| |||..||| .||||||||.|||
BPUM_3075 72 ----CCGACTAAGCCGCCAAAGCCTGCCAGAGCGAAGTCATCAGAAGAAA 117
BSNT_05182___ 124 ATCATACTGACCCTGCTGCCGTCCCATGACAATTTGGGAGATCACGCAAT 173
|||||.||.||.||||||||....|||||.|||||.||.|||||.||.||
BPUM_3075 118 ATCATTCTCACGCTGCTGCCAGGGCATGATAATTTAGGCGATCATGCCAT 167
BSNT_05182___ 174 TGCTTATGCCAGCAA--GGCATTTCTTGAGCAAGAATAC---CCGGACTT 218
|||.|||||.||..| | |||.||.| ||||..|| ||.|.||.
BPUM_3075 168 TGCCTATGCGAGTTATTG---TTTTTTAA--AAGAGCACTTTCCCGCCTA 212
BSNT_05182___ 219 TGACATCGTCGAGGTTGATATGAAGGACATTTACAAATCAGCAAAAAGCC 268
.||.|||.|.||.||.||.|||||.||.||.| ||| |||
BPUM_3075 213 CGATATCATGGAAGTGGACATGAAAGAGATCT----ATC--------GCC 250
BSNT_05182___ 269 TGATCCGCTC-------------GCGCCATCCGGAGGATATGGTCTTTAT 305
|...||| || |||.|||||.|||||.||.||.|.|||
BPUM_3075 251 TCGCCCG-TCCGTTAAAGCGTATGCGGCATCCAGAGGACATCGTTTGTAT 299
BSNT_05182___ 306 CATCGGCGGCGGAAACATGGGGGATATATACCGTTATGAGGAGTGGACGC 355
||||||.||.||.||.|||||.||..|||||||||||||.||.||||||.
BPUM_3075 300 CATCGGTGGGGGCAATATGGGAGACTTATACCGTTATGAAGAATGGACGA 349
BSNT_05182___ 356 GCCGCTTCATCATTAAAACATTCCATGACTATCGGGTTGTCCAGCTTCCG 405
|.|..||.|||||.|||||.|||.|...|||.|..||..|.||..|.|||
BPUM_3075 350 GACAATTTATCATGAAAACCTTCAAGTCCTACCCCGTGATTCAATTGCCG 399
BSNT_05182___ 406 GCAACGGCTCATTTTTCTGACACGAAAAAAGGGCGCAAAGAGCTGAA--A 453
|||||.|..||||||.|.||.|| |||.||.|.|.||||||..||| .
BPUM_3075 400 GCAACTGTCCATTTTACAGAAAC--AAAGAGAGGGAAAAGAGAGGAACGC 447
BSNT_05182___ 454 CGGGC-------ACAGA-AAATTTATAATGCGCACC--CC--GGCCTGTT 491
||.|| |||.| ||| |||| || || |||.|
BPUM_3075 448 CGCGCCATTCAAACATACAAA-----------CACCATCCAAGG-CTGCT 485
BSNT_05182___ 492 GCTGATGGCGCGGGATGAAACAACGTATCAATT-TATGAAACAGCATTT- 539
.||.|||||..|.|||.|||||||.|| ||.|| .|||||||||||.||
BPUM_3075 486 TCTCATGGCAAGAGATCAAACAACCTA-CACTTGGATGAAACAGCACTTC 534
BSNT_05182___ 540 -----TCAAGAAAAAACAATTTTGAAGCAGCCGGACATGGTGCTGTATTT 584
|||||| ..|.|.|||.|||||.||.|||||||||...||
BPUM_3075 535 CCTGATCAAGA------TGTATGGAAACAGCCTGATATGGTGCTGACATT 578
BSNT_05182___ 585 AGATAGAAGC----AAG--ACCCCCGCAGAACGCGAAGGGGTT-TATATG 627
|||| |||.| ||| || ||.||||.||||||||| || .|.
BPUM_3075 579 AGAT-GAATCGACTAAGGAAC-----CAAAACGTGAAGGGGTTCTA-CTT 621
BSNT_05182___ 628 TGTTTGCGCGAGGATCAGGAAAGCGTGCTTC-------AGGAGGAGCAGA 670
||||||||.||||||.||| ||||||...|| |||||..||||
BPUM_3075 622 TGTTTGCGAGAGGATAAGG-AAGCGTATCTCACTGAAAAGGAGCGGCAG- 669
BSNT_05182___ 671 GGAACCGAGTCAAAGCTGCGTTATTTGAGGAATTC-AGCGA-----GATC 714
.||..|||||.||.| |||| ||.|| ||||
BPUM_3075 670 ------CAGCTAAAGCAGCAT----------ATTCAAGAGACGTATGATC 703
BSNT_05182___ 715 AAACCCTTT--------ACGACAA-------------CGATCGGGCGCCG 743
.|..|..|| ||||||| .|||||..||
BPUM_3075 704 CAGTCGGTTTGATTACAACGACAATTGGCAAACGAGTTGATCGAACG--- 750
BSNT_05182___ 744 GGTCAGCCGCGATACACGCGAACAAGAACTTGAA------GCGCTGTGGT 787
||.||| |.||| |||| |||.|.|||.
BPUM_3075 751 -------------ACTCGC---CTAGA---TGAATTATCTGCGTTATGGA 781
BSNT_05182___ 788 CTAAGCT--GCAAAGCGCAGAAGCCGTCGTCACTGACAGGCTTCATGGCA 835
|..||.| |.||.|||||| |.|||||||||.||..|||||||.||.|
BPUM_3075 782 CAGAGTTACGTAAGGCGCAG--GTCGTCGTCACAGATCGGCTTCACGGTA 829
BSNT_05182___ 836 TGATTTTTTGCGCGCTGACAGGAACGCCGTGTGTTGTCATTCGCTCCTTT 885
||||||||||.|||.|.|||..|||.||||||||||||.|..|.||.|||
BPUM_3075 830 TGATTTTTTGTGCGATTACAAAAACACCGTGTGTTGTCCTCAGGTCGTTT 879
BSNT_05182___ 886 GACCATAAGGTGATGGAGGGCTATCAATGGCTTAAAG--ACATC--CCGT 931
||.||||||||||||||.||.|||.|||||.| | ||||| ||.|
BPUM_3075 880 GATCATAAGGTGATGGAAGGGTATGAATGGGT----GGCACATCTTCCTT 925
BSNT_05182___ 932 TCATGAAGC---TGATAGAACATCCG---GAGCCAGAGCGCGTAACAGCC 975
|..|||.|| |||.|||| ||| |||.| ||..|.|.||.||.|
BPUM_3075 926 TTTTGACGCTATTGAAAGAA---CCGAATGAGGC-GACTGTGAAAGAGGC 971
BSNT_05182___ 976 GCAGTCAATGAGCTTTTAACAAAAGAAACACCCCGTGCAGGCTTTCCGAG 1025
| |.||| |.|||..|.|||| .||||
BPUM_3075 972 G-ATTCA--------TCAACTGATGAAA-----------------ACGAG 995
BSNT_05182___ 1026 AGATGTGTATTTTAAAGGTCTGCGTGACAAAATCAGCGG----TGAAGCG 1071
.| ||||||| || .|||||.
BPUM_3075 996 CG-----------------------GACAAAA-----GGGAGAGGAAGCT 1017
BSNT_05182___ 1072 CAATGA 1077
..||||
BPUM_3075 1018 GGATGA 1023
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