Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05170 and BPUM_3063
See
Amino acid alignment /
Visit
BSNT_05170 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_05170___sigL.1.24716.seq
# -bsequence dna-align/BPUM_3063___sigL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05170___sigL-BPUM_3063___sigL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05170___sigL-BPUM_3063___sigL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05170___sigL
# 2: BPUM_3063___sigL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1494
# Identity: 861/1494 (57.6%)
# Similarity: 861/1494 (57.6%)
# Gaps: 369/1494 (24.7%)
# Score: 2195.0
#
#
#=======================================
BSNT_05170___ 1 ATGATGGATATG------AAACTTCAGCAAGTACAAGTATTAAAGC---- 40
||| ||.||.||.||||.||||||||||||||
BPUM_3063___s 1 ---------ATGAGCCTTAATCTGCAACAAGAACAAGTATTAAAGCAGGT 41
BSNT_05170___ 41 -CTCAACTGACACAGGAGCTCAGGCAGGCCATCACGCTGCT-TGGCT-AT 87
||| |||||.||.||||||||||||||.||..|||| ..||| |.
BPUM_3063___s 42 GCTC-----ACACAAGAACTCAGGCAGGCCATTACATTGCTCCAGCTGAA 86
BSNT_05170___ 88 CATTCGGCA--GAACTCGCCGAGTACATTGATGAGCTCTCACTGGAAAAC 135
|| ||| ||.||.|.||||||..||||..||.|..|.||.||.|||
BPUM_3063___s 87 CA----GCACTGAGCTTGGCGAGTATCTTGACCAGTTAGCGCTTGAGAAC 132
BSNT_05170___ 136 CCTCTTATTGAACGAAAGGAAACAGACACACCGCCACTATC-------TT 178
|||||.|||||.||.||.||.||.|||| .||||| ||
BPUM_3063___s 133 CCTCTGATTGAGCGGAAAGACACGGACA-------GCTATCAACCAGTTT 175
BSNT_05170___ 179 ACCATAAAACAAA---CAAAAACAGGATGAATGCACAGGAAGCGGGCCTT 225
|.|||||| ||| |||.|.| ||||| |||| |||.|
BPUM_3063___s 176 ATCATAAA--AAATCTCAAGACC-----GAATG-ACAG--AGCCG----- 210
BSNT_05170___ 226 CAATTAAGTAATC---CGCA--AAAAACA----TTGCA---GGATGCGTT 263
.||| |||| |||||.| ||||| |.|| ||
BPUM_3063___s 211 ---------TATCGAACGCATCAAAAAGAAAGCTTGCAAATGTAT---TT 248
BSNT_05170___ 264 A---AAACAGCAGTCACTCGATATGAATCTGACCAACACTGAAA------ 304
| ||||| ||.|| |.|||.|.||||| .|.|||||
BPUM_3063___s 249 AAAGAAACA--AGCCA-TTGATTTAAATCT------AAATGAAAAGAATC 289
BSNT_05170___ 305 AAAAGATTTTTAATTATCTGATTCATTCGCTTGATTCAAACGGGTACTTG 354
|||.|||.|||.|||.|.||||..|.||..|||||||.|||||.||.||.
BPUM_3063___s 290 AAAGGATCTTTCATTTTATGATCGAGTCCATTGATTCCAACGGCTATTTA 339
BSNT_05170___ 355 GAAGAAGATGTGGAGGA---GGCAGCACGGCGCCTATCT-----GTATCG 396
.|.|||...||.||.|| ||||| ||.||| ||.||.
BPUM_3063___s 340 AATGAACCGGTTGACGAAATGGCAG--------CTGTCTTAAAGGTGTCA 381
BSNT_05170___ 397 GCTAAGGAAACGGAGGCTGT--TTTGGCA-AAACTCCAGTCGTTAGAACC 443
|||.|.|||...||.||.|| || || .|.||.||.||..||||.||
BPUM_3063___s 382 GCTGAAGAAGTAGAAGCCGTCCTT---CATCAGCTTCAATCACTAGAGCC 428
BSNT_05170___ 444 GGCTGGAATCGGCGCGAGATCTTTGCAGGAATGCATCCTTCTTCAATTAC 493
.|||||.||.||.||||||||.||.||.|||||||||||.|||||
BPUM_3063___s 429 TGCTGGTATTGGGGCGAGATCATTACAAGAATGCATCCTGCTTCA----- 473
BSNT_05170___ 494 AGCGGCT--GCCGAACAGAAATGAAC---------AAGCGGAAATGCTGG 532
||| |..|| |.|||.|||| ||||.|| ||||.
BPUM_3063___s 474 ----GCTAAGAAGA--AAAAAGGAACGCTGGTACGAAGCCGA---GCTGA 514
BSNT_05170___ 533 T-----TTCAGCTCATTTTGATGCT-TTTGCACAAAAAAA-------ATG 569
| .|.|||.|.||| |.|| ||||| ||.||| |.|
BPUM_3063___s 515 TCATCGATGAGCACTTTT---TTCTCTTTGC---AAGAAAGGCTTGGAAG 558
BSNT_05170___ 570 GAAAGCGCTTTCAGTGGAGACAGGAATTCCGCTTCAT------ACTATTC 613
||||.|| |.|.|.|.|||||.||| |.||| |||| |
BPUM_3063___s 559 GAAATCG----CGGCGAAAACAGGCATT----TCCATGAAAACACTA--C 598
BSNT_05170___ 614 AAG----ATATCTCAGATGA--TATCGCGGCTCTTCATCCTAGACCTGGC 657
||| |.| |||||| |.||||.| |||.|.||.|||||.|||
BPUM_3063___s 599 AAGCAGTACA----AGATGAGGTGTCGCAG--CTTGAACCAAGACCAGGC 642
BSNT_05170___ 658 -----CTTCTGTTTGCCCGGCCAGAGCAAG------ATGTGTATATTGAG 696
.|||| ||.|..||| ||.|||||||.|||
BPUM_3063___s 643 ATCCATTTCT-----------CATACGAAGAAGATCATATGTATATAGAG 681
BSNT_05170___ 697 CCTGATATTTTTATCACCGTAAAAA------------ACGGGCACATTGC 734
||.||| ||||.|| |.|..||||||.|
BPUM_3063___s 682 CCAGAT------------GTAACAATTACTGTCGTGCAGGATCACATTAC 719
BSNT_05170___ 735 AGCGGAACTGAATACCCGCTCG-TTTCCCGAGA--TCGATCTGCATCCGC 781
|...||.|||||| |.||.|| |||||| ||| |.||..||.|| |.
BPUM_3063___s 720 ATTTGAGCTGAAT--CAGCGCGCTTTCCC-AGATGTTGAAATGAAT--GA 764
BSNT_05170___ 782 AGTACAGAACGCTTTTATCATC-----------CGGCTCCTGTCAGGATA 820
||.|.|...|||..|.|| || || ||.|| .||.|||
BPUM_3063___s 765 AGGATACTTCGCCATGAT--TCAAGACCAAAAGCG--TCATG-AAGCATA 809
BSNT_05170___ 821 CTGTCTCCTATTTATCT----GCGAAATATCAGGAGTGGCGCTGGCTGAG 866
|||.| .|.|.||||| |..|||.|.|||.|||.....|||||.|.
BPUM_3063___s 810 -TGTGT-ATGTGTATCTAAAGGAAAAAGAGCAGCAGTACAATTGGCTTAT 857
BSNT_05170___ 867 CCGCGCGCTGCGGCAGCGAAAACAGACAATCAC-------------GAGA 903
||..||||||..|||..|||||||.||.||.|| |||
BPUM_3063___s 858 CCAAGCGCTGAAGCAAAGAAAACAAACGATGACCCATGTCGTTCGTGAG- 906
BSNT_05170___ 904 ATTATCAATGAACTGATCACACGCCAAAAGGATTTCTTTCTGAAAGGGCG 953
|||||| |.||| |||.|.||||||.||.||.|.||| |
BPUM_3063___s 907 ATTATC----------TTACA--CCAGACGGATTTTTTCCTAACAGG--G 942
BSNT_05170___ 954 AAGC--GCAATGAAGCCGCTGACTCTCAGAGAGG-TGGCGGACTGTCT-- 998
||.| ..||||||.|||||.||..|.| ||.|| |.||.|| |.|||
BPUM_3063___s 943 AAACATAAAATGAAACCGCTTACGATGA-AGCGGATCGCAGA-TATCTTG 990
BSNT_05170___ 999 -AAGCCTTCATGAATCAACTGTGAGCCGGGCCATTAAAGGGAAAACAATA 1047
||| |.|||||.||.||.||.|||||..|..|.||||||||||...|.
BPUM_3063___s 991 CAAG--TGCATGAGTCCACAGTCAGCCGAACAGTGAAAGGGAAAATGGTG 1038
BSNT_05170___ 1048 CAAACGCCTTACGGGCTGTTTGAGATGAAACTCTTTTTCTCAGCAAA--- 1094
|||||.|||||.||.||..|.||.|||||||..||||||..||||||
BPUM_3063___s 1039 CAAACCCCTTATGGTCTCATGGAAATGAAACAATTTTTCCAAGCAAAGCT 1088
BSNT_05170___ 1095 AGCCGAGG--CTTCAGGTGATGG-AGATGCGTCGAATTATGCAGTCAAAA 1141
|| .||| |.|| |.||| |||.||.||.|..|||.|||||||.|
BPUM_3063___s 1089 AG--AAGGACCCTC----GCTGGAAGAGGCATCTAGCTATACAGTCAAGA 1132
BSNT_05170___ 1142 CG--CATCTGGAAAACCTGATCAATCAAGAGGACAAA----ACAAAACCG 1185
|| |||| |.|.|.|||||| |||..||| ||| |.|||||||
BPUM_3063___s 1133 CGTACATC--GCAGAGCTGATC---CAAACGGA-AAATAAGAAAAAACCG 1176
BSNT_05170___ 1186 CTTTCAGACCA--AAAGCTTGTCGATTTGCTGTATGA-------ACAACA 1226
..||||||.|| ||| || |||| |||.||
BPUM_3063___s 1177 TATTCAGATCAGCAAA--------------TG-ATGACGCAGCTACAGCA 1211
BSNT_05170___ 1227 ------TGGCATCCAAATCTCGAGACGCACCGTGGCAAAATATCGCGACC 1270
||||||||.|.|.|||.|..|.|||.|.||.||||||||.||.|
BPUM_3063___s 1212 AACCTTTGGCATCCGAGTGTCGCGCAGAACCATTGCGAAATATCGTGAAC 1261
BSNT_05170___ 1271 AAATGAATATTCCGTCATCGGCAGCGAGAAAGCGATATAAATAA 1314
||||||||.||||.|||||..||..|.|.|||||.|||.|.|||
BPUM_3063___s 1262 AAATGAATCTTCCATCATCTACACTGCGGAAGCGCTATGATTAA 1305
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.