Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06184 and BPUM_3059
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06184___rocE.1.24716.seq
# -bsequence dna-align/BPUM_3059___rocC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06184___rocE-BPUM_3059___rocC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06184___rocE-BPUM_3059___rocC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06184___rocE
# 2: BPUM_3059___rocC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 942/1557 (60.5%)
# Similarity: 942/1557 (60.5%)
# Gaps: 294/1557 (18.9%)
# Score: 2482.5
#
#
#=======================================
BSNT_06184___ 1 GTGAATACAA-ACCAAGATAACGGAAATCAGCTCCAGCGGACAATG-AAA 48
||.||| |.||..||||.| |||.|| ||||..|.||| |||
BPUM_3059___r 1 ----ATGCAAGAACAGCATAATG--AATTAG----AGCGTTCCATGAAAA 40
BSNT_06184___ 49 TCACGCCACTTGTTCATGATTTCATTGGGCGGAGTGATCGGAACCGGTTT 98
.|| |.||..|.||.||||||.|..|.|||||.||.|||||.||.|||.|
BPUM_3059___r 41 GCA-GACATCTCTTTATGATTGCCCTAGGCGGGGTCATCGGTACGGGTCT 89
BSNT_06184___ 99 CTTCCTTGGAACCGG---GTTTA-CCATTAACCAAGCGGGACCGCTCGGC 144
.|||||||||.|.|| |.||| |||| ||.||.|||||....||.
BPUM_3059___r 90 TTTCCTTGGATCAGGACTGATTATCCAT----CAGGCAGGACCAGGGGGA 135
BSNT_06184___ 145 GCGGTTCTGTCCTATTTAGTGGGCGGCTTTATCATGTTTTTGACGATGCT 194
||..||||.||.|.|.|..|.|||||.|||.|.||||.||||...|||||
BPUM_3059___r 136 GCCATTCTATCGTTTATCATTGGCGGATTTTTAATGTATTTGGTCATGCT 185
BSNT_06184___ 195 CTG-CTTAGGAGAGCTGGCAGTCGCCTTTCCTGTGTCAGGGTCCTTCCAG 243
.|| ||| |||||..|.|||||.||..|.||.....|.||.|||||.|||
BPUM_3059___r 186 GTGTCTT-GGAGAATTAGCAGTGGCGATGCCGACCGCCGGTTCCTTTCAG 234
BSNT_06184___ 244 ACCTATGCGACAAAATTTATCAGCCCGGCCTTCGGGTTTGCGTTCGGCTG 293
...|||||.||.||||.||||.|||||.||...||.|||..|.|||||||
BPUM_3059___r 235 GAATATGCAACCAAATATATCGGCCCGTCCACAGGTTTTATGATCGGCTG 284
BSNT_06184___ 294 GCTGTACTGGCTCGGCTGGGCGGTTACATGCGCCATT------GAATTCT 337
||||||.|||.|..||||||||..|||| ||| ||.||..
BPUM_3059___r 285 GCTGTATTGGTTTAGCTGGGCGTGTACA------ATTGGTCTGGAGTTTA 328
BSNT_06184___ 338 TATCAGCGGGGCA-GCTGATGCAACGATGGTTTCCGCATATAGACGTGTG 386
.|||||| .|||| ..||.|.|||.|.||||||||..||||....||.||
BPUM_3059___r 329 CATCAGC-AGGCATATTGCTCCAAAGGTGGTTTCCAGATATCCCGGTTTG 377
BSNT_06184___ 387 GATCTGGTGTCTGGTCTTT-GCGGCACTGATGT-TTATTT----TAAATG 430
|.|.||||||||.|..||| |||.|| | |||||| |.||||
BPUM_3059___r 378 GCTTTGGTGTCTAGCATTTAGCGTCA------TATTATTTGCCGTGAATG 421
BSNT_06184___ 431 CGATCAC----CACAAAAGCCTTTGCGGAATCAGAATTCTGGTTTTCAGG 476
|.|||.| |.|| .|||.||.|||.|.||.||.||||||||||.
BPUM_3059___r 422 CCATCTCTGCTCGCA----GCTTCGCTGAAACGGAGTTTTGGTTTTCAGC 467
BSNT_06184___ 477 CATTAAAATTTTGATTATCCTTTTATTTATTATTCTCGGCGGA----GCT 522
|||.||..||..|...|||||.||.||||||| ||..|||| ||
BPUM_3059___r 468 CATCAAGGTTGCGGCCATCCTATTGTTTATTA---TCATCGGAATTGGC- 513
BSNT_06184___ 523 GCCATGTTTGGCCTGATTGATCTGAAGGGCGGAGAGCAGGCGCCGTT-TT 571
||.||.||.||..|||||.||.|.||.||||||||.|..||.||.|| ||
BPUM_3059___r 514 GCAATTTTCGGAATGATTCATTTAAAAGGCGGAGAACCAGCCCCTTTATT 563
BSNT_06184___ 572 TGACA-CATTTTTATGAAGACGGGT----------TATTTCCGAACGGCA 610
| || ||||| |||||.| |||||||.||.||..
BPUM_3059___r 564 T--CATCATTT-------GACGGATCATGGCGGACTATTTCCTAATGGTG 604
BSNT_06184___ 611 TAAAGGCAATGCTGATT-ACGATGATTACCGTGAACTTTGCGTTTCAGGG 659
|....||.|| .|.||| ||.|||.|.||.||.||.||..|.|||||.||
BPUM_3059___r 605 TTTTTGCTAT-TTTATTAACCATGGTCACGGTCAATTTCTCCTTTCAAGG 653
BSNT_06184___ 660 GACTGAGCTGATCGGGGTTGCAGCCGGAGAAAGTGAAGACCCTGAAAAAA 709
.||.|||||..|.|||.|.|||||.||.||.||||||..|||||||||||
BPUM_3059___r 654 AACAGAGCTTGTAGGGATCGCAGCAGGTGAGAGTGAAAGCCCTGAAAAAA 703
BSNT_06184___ 710 CGATT-CCACGGTCAATCAAAC-AGACAGTA--TGGAGAACGCTTGTCTT 755
| ||| ||.||.||||| || |.|.|.|| ||||||||..|.|||||
BPUM_3059___r 704 C-ATTGCCTCGATCAAT---ACGAAATATTATTTGGAGAACAATGGTCTT 749
BSNT_06184___ 756 CTTTGTGCTTTCAATCATTGTCATTGC--------CGGCA-TGATTCCGT 796
.||.|| ||| ||| |||||| |.||| |..||||.|
BPUM_3059___r 750 TTTCGT--TTT--ATC-----CATTGCGGTTCTAGCCGCACTTCTTCCAT 790
BSNT_06184___ 797 GG-AAACAGGCGGGTGTCGTGGAAAGTCCATTTGTTGCCGTATTTGAGCA 845
|| |.||| ||.||.|..||.||.|||||.|||||.|.|||..|.|| ||
BPUM_3059___r 791 GGCAGACA-GCAGGCGCAGTCGACAGTCCGTTTGTGGTCGTGCTGGA-CA 838
BSNT_06184___ 846 A-ATCGGGATCCCATATGCAGCTGATATCATGAACTTTGTTATTTTAATC 894
| .||||.|||||||||||.||.|||||||||||.|||.||||..|.|..
BPUM_3059___r 839 AGGTCGGCATCCCATATGCTGCAGATATCATGAATTTTATTATCATCACA 888
BSNT_06184___ 895 GCGCTGTTATCTGTTGCGAATTCAGGTTTATACGCATCGACACGTAT--T 942
|||.|.||||||||.||.||.||.||.||.||.|||||..||||||| |
BPUM_3059___r 889 GCGGTCTTATCTGTAGCAAACTCTGGATTGTATGCATCATCACGTATGCT 938
BSNT_06184___ 943 CTGTACGC--------GATGGCGAATGAAGGACAGGCCTTCAAAGCGCTC 984
|||..|.| ||.| ||| ||||||..|.|||.| |
BPUM_3059___r 939 CTGGTCACTTTCAAAGGACG--GAA--AAGGACCCGACTTTA-------C 977
BSNT_06184___ 985 GGAAAAAC------------AAATCAGCGCGGTGTGCCGATGTACTCGTT 1022
|.|||||| ||||| |||||..|..|.||
BPUM_3059___r 978 GAAAAAACTGTCCAAGCGTAAAATC-----------CCGATCAATGCATT 1016
BSNT_06184___ 1023 AATCGTAACGATGGCTGTGGCCTGC-CTATCACTTCTGACAAAGT----T 1067
|.|.||.||.||||.||| ..|||| |||||.||.||.|| |||| |
BPUM_3059___r 1017 ATTGGTGACAATGGGTGT-ATCTGCTCTATCTCTGCTTAC-AAGTGTCGT 1064
BSNT_06184___ 1068 TGCGCAGGCTGAAAC--TGTATATATGGTACTGTTATC--TTTGGCGGGT 1113
.||.| |..|||| |||||.|.||| ||..|.|| ||| |.||.
BPUM_3059___r 1065 GGCAC---CAAAAACGGTGTATGTGTGG--CTTATTTCAATTT--CTGGA 1107
BSNT_06184___ 1114 ATGAGCGCGCAG--------GTCGGCTGGATTACGATCTCGCTT-TCCCA 1154
||| | ||||..|||||..|.|| |.|.|| ||.||
BPUM_3059___r 1108 ATG--------GTTCTTGTTGTCGTGTGGATGTCCAT-TTGTTTGTCTCA 1148
BSNT_06184___ 1155 A-ATCATGTTTAGACGCAAATATATCCGCGAAGGCGGGAAGATAGAAGA- 1202
| || .|.|||||| |||.|..|| |||.||||
BPUM_3059___r 1149 ATAT-TTCTTTAGA---AAACAATTC---------------ATAAAAGAC 1179
BSNT_06184___ 1203 -TTTGAAATTTAAA----------------ACACCGCTGTACCCGGTGCT 1235
.|.||.||.|||| ||||||||.||.||..|..|
BPUM_3059___r 1180 GGTGGAGATGTAAAGGATCTCGTCTTCCGTACACCGCTCTATCCATTTGT 1229
BSNT_06184___ 1236 TCCGCTGATC-GGCCTAACATTAAATACGG--TCGTGCTCATCAG----- 1277
.||.|| |.| |||.| ||||...|..|| |||||||.|||||
BPUM_3059___r 1230 CCCACT-AGCAGGCTT--CATTGCCTTTGGCATCGTGCTTATCAGCTTAT 1276
BSNT_06184___ 1278 TCTTGCAT-TTGATCCGGAGCAGCGTATCGCGCTGTATTGCGGCGTACCG 1326
|||| | |||| |||.|||||.||.|..||.|||||||||||||||
BPUM_3059___r 1277 TCTT---TATTGA---GGAACAGCGGATTGGCCTTTATTGCGGCGTACCG 1320
BSNT_06184___ 1327 TTTATGGTCATTTGCTACATCATTTATCATGTCGTCATTAAA---AAAC- 1372
|||||||.|...|||||||||||||||.||.|| ||| ||||
BPUM_3059___r 1321 TTTATGGCCGCCTGCTACATCATTTATTATCTC------AAAATCAAACC 1364
BSNT_06184___ 1373 ---GCCAGCAGGCGAATCGT----CAGCTAGAGCTTTAA----------- 1404
|..|| ||||.||.||| |.| .|||| .||
BPUM_3059___r 1365 GAAGGAAG-AGGCAAAGCGTTTCGCCG-AAGAG---GAAGGAATTCCAAA 1409
BSNT_06184___ 1404 ------- 1404
BPUM_3059___r 1410 AACATAA 1416
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