Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05135 and BPUM_3058
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_05135___cggR.1.24716.seq
# -bsequence dna-align/BPUM_3058___cggR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05135___cggR-BPUM_3058___cggR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05135___cggR-BPUM_3058___cggR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05135___cggR
# 2: BPUM_3058___cggR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1061
# Identity: 727/1061 (68.5%)
# Similarity: 727/1061 (68.5%)
# Gaps: 136/1061 (12.8%)
# Score: 2632.0
#
#
#=======================================
BSNT_05135___ 0 -------------------------------------------------- 0
BPUM_3058___c 1 ATGAATCGTTTATTGGAAGCTCAAAAAAAATTATTGCCAGATCTTCTCAC 50
BSNT_05135___ 1 -------------------------TTGCAGTATATCAGGCTGACAGAAC 25
|||||.||.||||||.|..|.||||
BPUM_3058___c 51 AGTTATGCAAAAACGCTACGACATTTTGCAATACATCAGGTTAGCTGAAC 100
BSNT_05135___ 26 CCATCGGGCGAAGAAGCCTGTCTGCCAGTCTCGGAATCAGCGAGCGTGTG 75
|.|||||.||.||||||||..|..|.|||||.||..||||.||.||..|
BPUM_3058___c 101 CAATCGGCCGCAGAAGCCTTGCGACGAGTCTAGGTCTCAGTGAACGCAT- 149
BSNT_05135___ 76 CTGAGGGGC-GAGGTTCAGTTTTTAAAGGAACAGAACCTGGTCGATATTA 124
||.|.|.|| ||.||||||||||||||.||.||.||.|||.|.|||.|.|
BPUM_3058___c 150 CTTAAGAGCTGAAGTTCAGTTTTTAAAAGAGCAAAATCTGCTGGATGTCA 199
BSNT_05135___ 125 AGACAAACGGCATGACATTGAC-AGAAGAGG---------GCTATGAACT 164
|.||.|.||||||||...|||| ||...||| ||| ||||.|
BPUM_3058___c 200 AAACGAGCGGCATGATGCTGACGAGTGAAGGTCACGCTTTGCT-TGAAAT 248
BSNT_05135___ 165 GCTTTCTGTTTTGGAAGATACGATGAAAGATGTTTTAGGTTTGACTCTTT 214
|||| ||||..|.||||||.||.|||||||||||.||..|||
BPUM_3058___c 249 GCTT---------GAAGGAATGATGAAGGACGTTTTAGGTTTAACCTTTT 289
BSNT_05135___ 215 TGGAAAAGACATTAAA-AGAACGTT-----TAAATCTGAAGGATGCCATT 258
|||||||.|||||||| ||.|.||| || ||| ||.|.|||.
BPUM_3058___c 290 TGGAAAATACATTAAAGAGGAAGTTAGGCCTA-----GAA-GAAGTCATG 333
BSNT_05135___ 259 ATCGTATCCGGAGACAGCGATCAATCCCCATGGGTCAAAAAAGAAATGGG 308
|||||.||.||.|||||.||..|||||||.|||||.||..||||.|||||
BPUM_3058___c 334 ATCGTTTCTGGTGACAGTGACGAATCCCCGTGGGTGAAGCAAGAGATGGG 383
BSNT_05135___ 309 AAGAGCGGCTGTCGC-ATGTATGAAAAAAAGATTTTCAGGCAAAAATATC 357
||||||.||||| || |||||||||||||||.|||.|.||.||.||||||
BPUM_3058___c 384 AAGAGCTGCTGT-GCAATGTATGAAAAAAAGGTTTACTGGAAATAATATC 432
BSNT_05135___ 358 GTCGCTGTAACTGGCGGTACGACAATTGAAGCTGTCGCCGAAATGATGAC 407
|||||.||.||||||||.|||||.||.|||||.||.||||||||||||||
BPUM_3058___c 433 GTCGCCGTCACTGGCGGAACGACGATGGAAGCCGTTGCCGAAATGATGAC 482
BSNT_05135___ 408 GCCGGATTCTAAAAACCGCGAGCTTTTGTTTGTGCCTGCAAGAGGCGGTT 457
.||.|||.||||||||.|.||..|..|||||||.|||||||||||||||.
BPUM_3058___c 483 CCCTGATGCTAAAAACAGAGACATGATGTTTGTCCCTGCAAGAGGCGGTC 532
BSNT_05135___ 458 TAGGCGAAGACGTGAAAAACCAGGCGAACACCATATGCGCGCATATGGCG 507
|.||.||..|.||.|||||.|||||.||||||||.||.||.||.|||||.
BPUM_3058___c 533 TTGGGGAGAATGTAAAAAATCAGGCAAACACCATTTGTGCCCACATGGCT 582
BSNT_05135___ 508 GAGAAGGCTTCAGGCACTTACCGGCTTTTGTTTGTTCCGGGACAGCTGTC 557
||.||.|||||.||.||||||...||..||||||||||.||||||.||||
BPUM_3058___c 583 GAAAAAGCTTCCGGTACTTACAAACTGCTGTTTGTTCCAGGACAGTTGTC 632
BSNT_05135___ 558 ACAAGGCGCCTATTCATCTATTATTGAAGAGCCTTCTGTCAAAGAGGTGC 607
|.||||.||.||.||.||.||||||||||||||.||.||||||||.||||
BPUM_3058___c 633 AGAAGGTGCTTACTCTTCCATTATTGAAGAGCCGTCCGTCAAAGAAGTGC 682
BSNT_05135___ 608 TGAACACCATTAAATCAGCGAGTATGCTGGTTCACGGAATCGGCGAAGCT 657
|..|.||.|||||||||.|.|..|||||..||||.||||||||.|||||.
BPUM_3058___c 683 TTCAAACGATTAAATCATCCACGATGCTTATTCATGGAATCGGTGAAGCA 732
BSNT_05135___ 658 AAAACTATGGCTCAGCGCAGAAACACGA----CTTTAGAAGACTTAAAGA 703
|||||.|||||...|.|..||||||| | || |||||.|||||.|
BPUM_3058___c 733 AAAACAATGGCGATGAGACGAAACAC-ACCAGCT---GAAGATTTAAAAA 778
BSNT_05135___ 704 AAATAGATGATAACGACGCGGTGACAGAAGCGTTCGGCTACTATTTTAAC 753
|.||.|||||..|.|||||.||||||||.||.||.|||||.||.||||||
BPUM_3058___c 779 AGATTGATGAGCATGACGCAGTGACAGAGGCCTTTGGCTATTACTTTAAC 828
BSNT_05135___ 754 GCG-GACGGCGAAGTGGTTCACAAAGTGCATTCTGTCGGAATGCAGCTGG 802
|| ||.||.||.||.||.|||||||||||.||.|||||.||||||.|.|
BPUM_3058___c 829 -CGTGATGGTGAGGTCGTCCACAAAGTGCACTCCGTCGGCATGCAGTTAG 877
BSNT_05135___ 803 ATGACATAGACGCCATCCCCGATATTATTGCGGTAGCGGGCGGATCATCA 852
||||..||||...|||.||..|.||.|||||.||.||.||.|||||||||
BPUM_3058___c 878 ATGATTTAGAAAGCATTCCACACATCATTGCTGTTGCAGGTGGATCATCA 927
BSNT_05135___ 853 AAAGCCGAGGCGATCGAGGCTTACTTTAAAAAGCCACGCAACACGGTTCT 902
||.||.|.|||.||.||.|||||.||.|||||.||.|||...||||||||
BPUM_3058___c 928 AAGGCAGGGGCCATTGAAGCTTATTTCAAAAAACCCCGCCGAACGGTTCT 977
BSNT_05135___ 903 CGTCACAGACGAAGGAGCCGCAAAGAAGTTATTAAGGGA------TGA-- 944
.|||||||||||||||||||||||..||||||||||||| |||
BPUM_3058___c 978 TGTCACAGACGAAGGAGCCGCAAAAGAGTTATTAAGGGAGTCAATTGATC 1027
BSNT_05135___ 945 -------ATAA 948
||||
BPUM_3058___c 1028 CCTCAATATAA 1038
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