Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05118 and BPUM_3044

See Amino acid alignment / Visit BSNT_05118 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_05118___yvbF.1.24716.seq
#    -bsequence dna-align/BPUM_3044.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05118___yvbF-BPUM_3044.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05118___yvbF-BPUM_3044.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05118___yvbF
# 2: BPUM_3044
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 577
# Identity:     386/577 (66.9%)
# Similarity:   386/577 (66.9%)
# Gaps:          59/577 (10.2%)
# Score: 1250.0
# 
#
#=======================================

BSNT_05118___      1 GTGAAAAA--AACCGCTCTCGACATCATTGAACATGCTGAAGAGCATCTC     48
                     |||.|.||  ||  ||.||.|.|..||||.||.|.||..|.||.|||...
BPUM_3044          1 GTGGACAAGCAA--GCGCTAGGCGCCATTCAAAAAGCACAGGATCATTAT     48

BSNT_05118___     49 ATTGAGAAGATTGCCGAAAATATGCATACGTTTGGAATGCCTTCAACTGT     98
                     |||||.||...|||.||.||.|||.||.|.|||||..|..||||.||.||
BPUM_3044         49 ATTGAAAAAGCTGCAGAGAACATGAATGCCTTTGGTCTTTCTTCTACAGT     98

BSNT_05118___     99 CGGACGTGTGCTCGGAATTATTTATATGAATCGAAAACCGATGACCTTAA    148
                     .||..|.|||||.||.||.|||.|.|||||.||.|||||.|||||     
BPUM_3044         99 GGGTAGAGTGCTTGGTATCATTCACATGAACCGTAAACCAATGAC-----    143

BSNT_05118___    149 GC-----GAGCTCTCTGAGGCAACGGGCATGAGCAAAACACGGATGAGCC    193
                     ||     |||||.||.||||||||.||||||||||||||..|||||||.|
BPUM_3044        144 GCTGGAAGAGCTATCAGAGGCAACCGGCATGAGCAAAACGAGGATGAGTC    193

BSNT_05118___    194 AGGTTGTCCGGGAAATGATCGATGCCAATATCGCCGAAAAGGTGTTTGAA    243
                     |.||.||.||.||||||.|||||...|||||.||.||||||||.|.||||
BPUM_3044        194 AAGTCGTTCGAGAAATGCTCGATTTAAATATTGCGGAAAAGGTTTATGAA    243

BSNT_05118___    244 AAAGGCGTACGAAAAGACCTTTATGACGTCGAGCAGGATTATTATCAAAC    293
                     |||||..||||.|||||.|||||||||||.|||||.|||.|.||.|||||
BPUM_3044        244 AAAGGAATACGTAAAGATCTTTATGACGTTGAGCAAGATCAATACCAAAC    293

BSNT_05118___    294 CTTCATTTCTTTATTTGCGGCGAATTGGACAAAGGTCGTGAGCAAAAAC-    342
                     .||.|||||.||.|||||.||.|||||||||...||.||.||.|||||| 
BPUM_3044        294 GTTTATTTCATTGTTTGCAGCCAATTGGACACGTGTTGTCAGTAAAAACC    343

BSNT_05118___    343 --AAAGTGCTGTATAAAAAA---TTAAACCGGGAACTG--AGTGAT-CTT    384
                       ||||..|   ||||.|||   |..||   ||||.||  ||.|.| |||
BPUM_3044        344 GTAAAGCAC---ATAAGAAAACGTGCAA---GGAATTGCAAGAGCTGCTT    387

BSNT_05118___    385 TTACAAAGGGACGGGCTTACCCCGGAAG---CGGAAGAGAAAGTCAATCA    431
                     ..|||   ||| .|..|||  ||.||||   |.||.||.|||.||||||.
BPUM_3044        388 GAACA---GGA-AGATTTA--CCAGAAGAAACAGAGGATAAAATCAATCT    431

BSNT_05118___    432 GCTGCTGAATGAATTAAAAGAATGGCTTCATTACTATGATTGGCTGAGCA    481
                     |||.||....|||.|.||.|||.|.|||.||||||||||||||.|.|||.
BPUM_3044        432 GCTTCTTTCAGAAATCAAGGAAAGTCTTGATTACTATGATTGGATTAGCC    481

BSNT_05118___    482 GGTTGATTGAATTTTTTGAGAGTGAGGAAGTCTTTCGGTACGTGCCAAAA    531
                     |.||.|||||.||.|||||.|||||.|||||.|||..|.|.|||||.|||
BPUM_3044        482 GCTTAATTGAGTTCTTTGAAAGTGAAGAAGTATTTAAGCATGTGCCGAAA    531

BSNT_05118___    532 ACAAAAGAAAGCAGCTCTCTAAAATAA    558
                     .|..||                     
BPUM_3044        532 CCTTAA---------------------    537


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