Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05118 and BPUM_3044
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05118___yvbF.1.24716.seq
# -bsequence dna-align/BPUM_3044.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05118___yvbF-BPUM_3044.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05118___yvbF-BPUM_3044.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05118___yvbF
# 2: BPUM_3044
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 577
# Identity: 386/577 (66.9%)
# Similarity: 386/577 (66.9%)
# Gaps: 59/577 (10.2%)
# Score: 1250.0
#
#
#=======================================
BSNT_05118___ 1 GTGAAAAA--AACCGCTCTCGACATCATTGAACATGCTGAAGAGCATCTC 48
|||.|.|| || ||.||.|.|..||||.||.|.||..|.||.|||...
BPUM_3044 1 GTGGACAAGCAA--GCGCTAGGCGCCATTCAAAAAGCACAGGATCATTAT 48
BSNT_05118___ 49 ATTGAGAAGATTGCCGAAAATATGCATACGTTTGGAATGCCTTCAACTGT 98
|||||.||...|||.||.||.|||.||.|.|||||..|..||||.||.||
BPUM_3044 49 ATTGAAAAAGCTGCAGAGAACATGAATGCCTTTGGTCTTTCTTCTACAGT 98
BSNT_05118___ 99 CGGACGTGTGCTCGGAATTATTTATATGAATCGAAAACCGATGACCTTAA 148
.||..|.|||||.||.||.|||.|.|||||.||.|||||.|||||
BPUM_3044 99 GGGTAGAGTGCTTGGTATCATTCACATGAACCGTAAACCAATGAC----- 143
BSNT_05118___ 149 GC-----GAGCTCTCTGAGGCAACGGGCATGAGCAAAACACGGATGAGCC 193
|| |||||.||.||||||||.||||||||||||||..|||||||.|
BPUM_3044 144 GCTGGAAGAGCTATCAGAGGCAACCGGCATGAGCAAAACGAGGATGAGTC 193
BSNT_05118___ 194 AGGTTGTCCGGGAAATGATCGATGCCAATATCGCCGAAAAGGTGTTTGAA 243
|.||.||.||.||||||.|||||...|||||.||.||||||||.|.||||
BPUM_3044 194 AAGTCGTTCGAGAAATGCTCGATTTAAATATTGCGGAAAAGGTTTATGAA 243
BSNT_05118___ 244 AAAGGCGTACGAAAAGACCTTTATGACGTCGAGCAGGATTATTATCAAAC 293
|||||..||||.|||||.|||||||||||.|||||.|||.|.||.|||||
BPUM_3044 244 AAAGGAATACGTAAAGATCTTTATGACGTTGAGCAAGATCAATACCAAAC 293
BSNT_05118___ 294 CTTCATTTCTTTATTTGCGGCGAATTGGACAAAGGTCGTGAGCAAAAAC- 342
.||.|||||.||.|||||.||.|||||||||...||.||.||.||||||
BPUM_3044 294 GTTTATTTCATTGTTTGCAGCCAATTGGACACGTGTTGTCAGTAAAAACC 343
BSNT_05118___ 343 --AAAGTGCTGTATAAAAAA---TTAAACCGGGAACTG--AGTGAT-CTT 384
||||..| ||||.||| |..|| ||||.|| ||.|.| |||
BPUM_3044 344 GTAAAGCAC---ATAAGAAAACGTGCAA---GGAATTGCAAGAGCTGCTT 387
BSNT_05118___ 385 TTACAAAGGGACGGGCTTACCCCGGAAG---CGGAAGAGAAAGTCAATCA 431
..||| ||| .|..||| ||.|||| |.||.||.|||.||||||.
BPUM_3044 388 GAACA---GGA-AGATTTA--CCAGAAGAAACAGAGGATAAAATCAATCT 431
BSNT_05118___ 432 GCTGCTGAATGAATTAAAAGAATGGCTTCATTACTATGATTGGCTGAGCA 481
|||.||....|||.|.||.|||.|.|||.||||||||||||||.|.|||.
BPUM_3044 432 GCTTCTTTCAGAAATCAAGGAAAGTCTTGATTACTATGATTGGATTAGCC 481
BSNT_05118___ 482 GGTTGATTGAATTTTTTGAGAGTGAGGAAGTCTTTCGGTACGTGCCAAAA 531
|.||.|||||.||.|||||.|||||.|||||.|||..|.|.|||||.|||
BPUM_3044 482 GCTTAATTGAGTTCTTTGAAAGTGAAGAAGTATTTAAGCATGTGCCGAAA 531
BSNT_05118___ 532 ACAAAAGAAAGCAGCTCTCTAAAATAA 558
.|..||
BPUM_3044 532 CCTTAA--------------------- 537
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