Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05114 and BPUM_3040
See
Amino acid alignment /
Visit
BSNT_05114 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05114___opuCD.1.24716.seq
# -bsequence dna-align/BPUM_3040___opuCD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05114___opuCD-BPUM_3040___opuCD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05114___opuCD-BPUM_3040___opuCD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05114___opuCD
# 2: BPUM_3040___opuCD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 508/703 (72.3%)
# Similarity: 508/703 (72.3%)
# Gaps: 41/703 ( 5.8%)
# Score: 1808.5
#
#
#=======================================
BSNT_05114___ 1 ATGGAAGTACTACAGCAGCT-TGGCACATACTATTCGCAAAACGGCGGTT 49
|||||...|||.|||||..| ||| ||.||.|||..|||.|||||....|
BPUM_3040___o 1 ATGGACACACTGCAGCAATTATGG-ACGTATTATCAGCAGAACGGTTCAT 49
BSNT_05114___ 50 ATGTGCTGCAGGAGTTTTACCGCCATTTTCTGATGTCGGTATACGGCGTT 99
|||||.|..|.||.|||||.||.||||||||.|||||.|..||.||.||.
BPUM_3040___o 50 ATGTGTTAGAAGAATTTTATCGGCATTTTCTCATGTCAGCGTATGGGGTG 99
BSNT_05114___ 100 TTATTTGCCGCCATTGTTGGAATTCCGCTCGGCATCCTGATAGC-CAGAT 148
.|.|||||.||.||.||.||||||||..|.||||||.|..|.|| || .|
BPUM_3040___o 100 CTGTTTGCGGCAATAGTCGGAATTCCAGTAGGCATCTTTGTGGCGCA-TT 148
BSNT_05114___ 149 ACAG-AAGATTAAGCGGATGGGTTTTTGCGGTCACGAACGTCATTCAGAC 197
||.| ||| .|||||...|||.|.|||||..|.||.||.||||||||.||
BPUM_3040___o 149 ACCGTAAG-CTAAGCAATTGGATCTTTGCCATTACCAATGTCATTCAAAC 197
BSNT_05114___ 198 GATCCCGGCTCTCGCCATGCTTGCCGTGCTGATGCTTGTCATGGGGCTGG 247
.||.|||||..|.||.||||||.|||||.|.||||||||..|.||.||.|
BPUM_3040___o 198 CATACCGGCGTTAGCGATGCTTTCCGTGTTAATGCTTGTGTTAGGACTTG 247
BSNT_05114___ 248 GCGCTAATACGGTGATATTGTCATTATTTCTGTATTCTCTTCTGCCGATT 297
||.|.|||||.||.||.||.|||.|.|||||||||||.||||||||||||
BPUM_3040___o 248 GCTCAAATACAGTCATCTTATCACTCTTTCTGTATTCGCTTCTGCCGATT 297
BSNT_05114___ 298 ATCAGAAATACGTATACAGGGATTATCAGTATTGAGCACGCCTATCTTGA 347
|||.|.||.|||||||||||||||.||||.|||||.||.||.|||.|.||
BPUM_3040___o 298 ATCCGCAACACGTATACAGGGATTGTCAGCATTGAACATGCGTATTTAGA 347
BSNT_05114___ 348 ATCCGGAAAAGCAATGGGGATGACAAAATTTCAAGTGCTGCGGATGGTCG 397
|||.||.|||||.|||||.|||||.||||..|||||||||.|.|||||.|
BPUM_3040___o 348 ATCGGGTAAAGCGATGGGCATGACGAAATGGCAAGTGCTGAGAATGGTTG 397
BSNT_05114___ 398 AGCTTCCGCTTGCGCTTTCGGTCATAATGGCCGGCCTGCGCACCGCGCTT 447
|..|.||||||||..|.||||||||||||||.||..|..|.||.||.||.
BPUM_3040___o 398 AATTACCGCTTGCTTTATCGGTCATAATGGCTGGTTTAAGAACGGCACTG 447
BSNT_05114___ 448 GTCATTGCCATCGGCATTACGGCCATCGGGACATTTGTCGGTGCAGGCGG 497
||||||||||||||.|||||.||.||.|||||||||||.||||||||.||
BPUM_3040___o 448 GTCATTGCCATCGGTATTACAGCGATTGGGACATTTGTTGGTGCAGGAGG 497
BSNT_05114___ 498 TCTCGGGGACATCATCGTCAGGGGATCAAACGCCACAAACGGAACCGCGA 547
|||.||.||.||||||.||||.|||||||||||||||||||||||.||.|
BPUM_3040___o 498 TCTAGGTGATATCATCATCAGAGGATCAAACGCCACAAACGGAACAGCCA 547
BSNT_05114___ 548 TTATATTAGCGGGAGCGATCCCCACAGCTCTGATGGCGGTGATTGCCGAT 597
|.||.|||||.||.|||||.||.||.||.||.|||||..|.||.||.||.
BPUM_3040___o 548 TCATTTTAGCAGGTGCGATTCCAACTGCACTCATGGCCATTATCGCTGAC 597
BSNT_05114___ 598 TTGGTCATGGGCTGGCTTGAACGAGCATTAAGCCCGATTA-----AAAAG 642
.|.||||||||||||||.|||||....||||||||.|..| ||||.
BPUM_3040___o 598 CTAGTCATGGGCTGGCTCGAACGTTATTTAAGCCCAACGAACAAGAAAAA 647
BSNT_05114___ 643 AGAAAGAA-----------GAAAA---------ATCTGGCAGGTGCCGCA 672
|||||||| ||||| |||| ||.
BPUM_3040___o 648 AGAAAGAAAAGCATTAGCTGAAAAAAACATGACATCT----------GCT 687
BSNT_05114___ 673 TAA 675
|||
BPUM_3040___o 688 TAA 690
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.