Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05105 and BPUM_3039

See Amino acid alignment / Visit BSNT_05105 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_05105.1.24716.seq
#    -bsequence dna-align/BPUM_3039.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05105-BPUM_3039.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05105-BPUM_3039.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05105
# 2: BPUM_3039
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     233/339 (68.7%)
# Similarity:   233/339 (68.7%)
# Gaps:          30/339 ( 8.8%)
# Score: 771.5
# 
#
#=======================================

BSNT_05105         1 ATGAACCAATCAGAAATGTGTCCTAGATTTGAAAAAGCAGTCGACATCTT     50
                     |||||.|||||.||.|||||.||..|.||||||||||||||.||..|.||
BPUM_3039          1 ATGAATCAATCTGATATGTGCCCGCGGTTTGAAAAAGCAGTTGAGTTATT     50

BSNT_05105        51 AAGTAAACGCTGGGTCGCTTTAATCGTATTTCAG---CTCTTGAACGGGT     97
                     .||||||||||||||.||..|.||.||.||||||   ||||    |.|||
BPUM_3039         51 GAGTAAACGCTGGGTTGCACTGATTGTTTTTCAGCTTCTCT----CAGGT     96

BSNT_05105        98 -CGCAGCGATTTAGCGAAATTGAAGCAGCACTTCCAAATCTAAGCGGCAG    146
                      |||||||.|||||.||||||||.||.||.||..|||||.|||||||.||
BPUM_3039         97 CCGCAGCGCTTTAGTGAAATTGAGGCCGCTCTGACAAATTTAAGCGGAAG    146

BSNT_05105       147 AGT----TCTGTCAGAACGGCTGAAAGAACTTG-AGCTTGAAGGAGTAGT    191
                     |||    ||||..|||    .|.||||||||.| ||| .|.|||..|.||
BPUM_3039        147 AGTATTATCTGAGAGA----TTAAAAGAACTGGAAGC-AGCAGGCATTGT    191

BSNT_05105       192 GAAGCGGGATGTCATCCCTGAAACTCCGGTTCGCATCGAATATTCATTGA    241
                     .||.|||||.||..|..|||||||.||.||.||.||.||.|||||.||.|
BPUM_3039        192 AAAACGGGAAGTTTTTGCTGAAACACCCGTGCGTATTGAGTATTCTTTAA    241

BSNT_05105       242 CTGATAAAGGAAAGGCACTAGCACCCATATTAGGTGAGATTTCTAAATGG    291
                     ||||||..||.|...|.||.||||||.|.||.|..||.|||||.||.|||
BPUM_3039        242 CTGATATGGGGAGTTCCCTTGCACCCGTTTTTGAGGAAATTTCGAAGTGG    291

BSNT_05105       292 GCGACTGAATGGATTGACCCTTCCTTTCTTGACTAA---    327
                     .|.|||||||||||         |...|||||.|.|   
BPUM_3039        292 TCTACTGAATGGAT---------CACGCTTGAATCATAA    321


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