Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02774 and BPUM_3015
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02774___pksA.1.24716.seq
# -bsequence dna-align/BPUM_3015___pksA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02774___pksA-BPUM_3015___pksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02774___pksA-BPUM_3015___pksA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02774___pksA
# 2: BPUM_3015___pksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 733
# Identity: 381/733 (52.0%)
# Similarity: 381/733 (52.0%)
# Gaps: 242/733 (33.0%)
# Score: 764.5
#
#
#=======================================
BSNT_02774___ 1 ATGCCAAAACAAAT------TGACCATGAGAAAAGAAGAAAACAAA---T 41
||||||| |||| |.||||| |||.| |||||||| |
BPUM_3015___p 1 ATGCCAA---AAATCGTCGATCACCAT----AAACA--AAAACAAAAAGT 41
BSNT_02774___ 42 TGCAGAAGCAACGTG----GCGCGTCATTTTAGAACGAGGGATGGA--GG 85
.||..|||| || |.|.||.|||..|.| ||||||| ||
BPUM_3015___p 42 CGCTCAAGC----TGCTATGAGAGTGATTAAACA-----GGATGGATTGG 82
BSNT_02774___ 86 GA---GCATCAGCCAGGAACATTGCAAAG-----GAAGCAGGATTGTCAT 127
.| ||.||.| .|.|||.|.| || ||||| ||.|||
BPUM_3015___p 83 AAAACGCTTCTG-TACGAAAAGT----AGCGGTAGAAGC-----TGGCAT 122
BSNT_02774___ 128 T--AGGTG---CACTGCGCCATTATTTCTCTACACAGGATGA---ATTGC 169
| ||.|| |..||||.|||||||||||.||||||.|.|| |||.|
BPUM_3015___p 123 TTCAGCTGGCTCTATGCGTCATTATTTCTCCACACAGCAGGAGCTATTTC 172
BSNT_02774___ 170 TTGCTTTTGCAATGAAACTTG-TCCAAGAAAAGGTGACTGACCGAATTA- 217
| |||.| |.||||.| ||| |.||.||||..||.|..||.|||||.|
BPUM_3015___p 173 T--CTTCT-CTATGACA-TTGATTCAGGAAAGAGTCAAAGAGCGAATGAC 218
BSNT_02774___ 218 AGGACATTGCAG-TGAGGGATTTGCTCCCTAAGGAA-AAAGTGTT----- 260
||||| |.||| |||..|.|| |.|.|||| |||.||||
BPUM_3015___p 219 AGGAC--TTCAGCTGAATGGTT------CAACGGAAGAAAATGTTCTCGC 260
BSNT_02774___ 261 ---------GCAAATTTTGCTTGAAATGGTCCCAACGAATGAAGAAACGA 301
|||..|| ||| |||....|||||| |||||
BPUM_3015___p 261 GTTATTGGAGCAGGTT---CTT---------CCACTTGATGAAG-AACGA 297
BSNT_02774___ 302 TTAGA---GAGATGGAGGTTTGGTTTGCTTTTACTGCTTACG-------- 340
||| ||.||||||||.|||...|||||||| |.|||.|
BPUM_3015___p 298 --AGATTTGAAATGGAGGTGTGGCAGGCTTTTAC-GGTTAAGTCGATGAC 344
BSNT_02774___ 341 ----CCAGACATAAA-------AAGG---ATATGTTTGATGCGAATCATG 376
|||||..||.| ||.| |.|||| |||
BPUM_3015___p 345 TGAACCAGATTTACAGCCACTCAATGCAAAGATGT------------ATG 382
BSNT_02774___ 377 ACGGGATTTTCAGCGGC--ATG-CGGAATCTGATTGCCTATTTAGATGAA 423
|||.|.||||| | ||| |..||| |||| |||| ||||
BPUM_3015___p 383 ACGAGCTTTTC-----CAAATGACCCAAT---ATTG----TTTA-ATGA- 418
BSNT_02774___ 424 TCCGATTTACTGAAGCAGAA------------TGCTGATAAAGA------ 455
.|||.| ||| ||.| ||.|.|||..||
BPUM_3015___p 419 ---CATTAA---AAG-AGGATGGGCTTTTGCTTGATCATATCGATCTTTT 461
BSNT_02774___ 456 CATTGAAGCTGAGAGACTTTACGCGCTTGTTGACGG-CTTGGCTTTACAT 504
|.|.|||.|||||.|.|||||.|||.|..|..|||| ||| ||.||..||
BPUM_3015___p 462 CGTCGAAACTGAGCGGCTTTATGCGGTCATCAACGGACTT-GCATTGAAT 510
BSNT_02774___ 505 GCCATGCTTG-ACCCTGTGCGCGTGAATAAAGACCGAATTAAGCGGGTCA 553
|..|| |||| |.|||...|||.| ||||..| |.|.|||
BPUM_3015___p 511 GGAAT-CTTGCAGCCTCATCGCTT--------ACCGCCT----CAGCTCA 547
BSNT_02774___ 554 TTA----------TGCA---GCATGTAGAGTCAATTTGCGTGGAAGGTAA 590
|| |||| ||||.|..|.||.|| .
BPUM_3015___p 548 -TACGCTCCGTGCTGCAGATGCATCTGCAATCCAT--------------C 582
BSNT_02774___ 591 ACGTGAGACAGAAGAGA-AGG-------AATAA 615
|| ||.||.||| |.| .||||
BPUM_3015___p 583 AC------CAAAAAAGACATGTCTCCCTCATAA 609
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