Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02773 and BPUM_3014
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02773___ymcC.1.24716.seq
# -bsequence dna-align/BPUM_3014.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02773___ymcC-BPUM_3014.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02773___ymcC-BPUM_3014.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02773___ymcC
# 2: BPUM_3014
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity: 358/633 (56.6%)
# Similarity: 358/633 (56.6%)
# Gaps: 159/633 (25.1%)
# Score: 790.5
#
#
#=======================================
BSNT_02773___ 1 TTGAACGG--TATCGCATGGATGATTGTTTTCTGTGAAATTGCGTTTTGG 48
|||..||| ||| |||||||....||||||||||..||||||
BPUM_3014 1 TTGGTCGGGTTAT--------TGATTGTGGCATGTGAAATTGGCTTTTGG 42
BSNT_02773___ 49 GTTGTCATTGTATTGGGGCTTGCTGTACGTTACGTATTCAAACGACATAC 98
.|..|.|||.||.|||||.|..|..|.|||||.||.||.|.|| |.|.|.
BPUM_3014 43 CTGTTTATTCTAGTGGGGTTAACACTGCGTTATGTGTTTAGAC-AGAAAA 91
BSNT_02773___ 99 ATTAGGACTGCTATTCCTTGGCTTA-----ACTCCAGTTATCGATTTGAT 143
|.|.||.| || ||||.|| ||.| ||.|||.||.|.|||.|.||
BPUM_3014 92 AGTGGGGC-GC-ATTCTTT--CTCATTTGTACACCAATTTTGGATCTCAT 137
BSNT_02773___ 144 TTTGTTAGCGGCAACTGGTGTGGACCTTT---ACCGCGGAGCCTCAGCGA 190
|.|..|.||.||.||...|.|||| ||| ||.| ||.||....||||
BPUM_3014 138 TCTTCTGGCAGCGACGTATTTGGA--TTTAAGACAG-GGGGCTGTGGCGA 184
BSNT_02773___ 191 CCG-CAGCCCATGGGATTGCAGCTGTTTACATCGGTATATCGA---TCGC 236
..| || ..||||||.|.||.||||||||.||.||..| || ||||
BPUM_3014 185 GTGTCA-TTCATGGGCTCGCGGCTGTTTATATTGGGGT---GAGTCTCGC 230
BSNT_02773___ 237 TTATGGAAAACAAATGATTCAATGGGCAGATGAAAAGTTCCAATATT--- 283
||.||||.|.||.|||.|..|||||||||||| |||..| ||
BPUM_3014 231 TTTTGGACATCAGATGGTGAAATGGGCAGATG------TCCGGT-TTGCT 273
BSNT_02773___ 284 -----ATGTGACAAAAAAAGGCGCAAAACCGCTGAAACGTTTTGGAATGG 328
||.|| .|..||||.|.||.||| || |||| .|
BPUM_3014 274 TATCGATTTG----CAGGAGGCCCTAAGCCG----AA------GGAA-AG 308
BSNT_02773___ 329 ACCATGCCAA----------GCACGGTGC-------GAAA-----GGCTG 356
|||| || |.||||| | |||| |||||
BPUM_3014 309 ACCA----AAATACGGGAAGGAACGGT-CTGTGTATGAAATAGTCGGCTG 353
BSNT_02773___ 357 GCTAAGACATGTGCTGGCCTACTTA----ATTGGTGCGGG---ACTATTG 399
|....|.||| ||.|.|| |||| ||.||.||.|| ||||||
BPUM_3014 354 GACGCGGCAT---CTCGTCT-CTTATGTCATCGGAGCTGGTCTACTATT- 398
BSNT_02773___ 400 GCAGGGATGAT-CTATTTTAT-CAATGACTCTGCCCGAACCGAGGCGTTG 447
.|||.| || ||||.|.|| |||..| ||.||||.||.|
BPUM_3014 399 --TGGGCT-ATCCTATCTCATCCAAGCA-----CCAGAACGGACG----- 435
BSNT_02773___ 448 AGCGGCATTCTTAAAC--------------TGTGGACT-GTCATTATAGG 482
|..||| ||.|.|| ||.|||.| ||| .||||
BPUM_3014 436 -GAAGCA--CTGATACAGCTAGCAAGAGTATGGGGAATGGTC---TTAGG 479
BSNT_02773___ 483 CATTGACTTTC-TCATTACAGC--CAGCTATTTTATTTGGCCAAAAAAAG 529
|||||| |||| ||||| ||| |||||||.|.|||||||||||||||.
BPUM_3014 480 CATTGA-TTTCGTCATT--AGCATCAGCTATGTGATTTGGCCAAAAAAAC 526
BSNT_02773___ 530 A---GAAAGCTTCGGCGAATCTCAG-GAGTTAA 558
| |.|| |||.| || .||.|||
BPUM_3014 527 ACCCGCAA---------AATAT-AGCCAGCTAA 549
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