Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02773 and BPUM_3014

See Amino acid alignment / Visit BSNT_02773 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_02773___ymcC.1.24716.seq
#    -bsequence dna-align/BPUM_3014.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02773___ymcC-BPUM_3014.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02773___ymcC-BPUM_3014.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02773___ymcC
# 2: BPUM_3014
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity:     358/633 (56.6%)
# Similarity:   358/633 (56.6%)
# Gaps:         159/633 (25.1%)
# Score: 790.5
# 
#
#=======================================

BSNT_02773___      1 TTGAACGG--TATCGCATGGATGATTGTTTTCTGTGAAATTGCGTTTTGG     48
                     |||..|||  |||        |||||||....||||||||||..||||||
BPUM_3014          1 TTGGTCGGGTTAT--------TGATTGTGGCATGTGAAATTGGCTTTTGG     42

BSNT_02773___     49 GTTGTCATTGTATTGGGGCTTGCTGTACGTTACGTATTCAAACGACATAC     98
                     .|..|.|||.||.|||||.|..|..|.|||||.||.||.|.|| |.|.|.
BPUM_3014         43 CTGTTTATTCTAGTGGGGTTAACACTGCGTTATGTGTTTAGAC-AGAAAA     91

BSNT_02773___     99 ATTAGGACTGCTATTCCTTGGCTTA-----ACTCCAGTTATCGATTTGAT    143
                     |.|.||.| || ||||.||  ||.|     ||.|||.||.|.|||.|.||
BPUM_3014         92 AGTGGGGC-GC-ATTCTTT--CTCATTTGTACACCAATTTTGGATCTCAT    137

BSNT_02773___    144 TTTGTTAGCGGCAACTGGTGTGGACCTTT---ACCGCGGAGCCTCAGCGA    190
                     |.|..|.||.||.||...|.||||  |||   ||.| ||.||....||||
BPUM_3014        138 TCTTCTGGCAGCGACGTATTTGGA--TTTAAGACAG-GGGGCTGTGGCGA    184

BSNT_02773___    191 CCG-CAGCCCATGGGATTGCAGCTGTTTACATCGGTATATCGA---TCGC    236
                     ..| || ..||||||.|.||.||||||||.||.||..|   ||   ||||
BPUM_3014        185 GTGTCA-TTCATGGGCTCGCGGCTGTTTATATTGGGGT---GAGTCTCGC    230

BSNT_02773___    237 TTATGGAAAACAAATGATTCAATGGGCAGATGAAAAGTTCCAATATT---    283
                     ||.||||.|.||.|||.|..||||||||||||      |||..| ||   
BPUM_3014        231 TTTTGGACATCAGATGGTGAAATGGGCAGATG------TCCGGT-TTGCT    273

BSNT_02773___    284 -----ATGTGACAAAAAAAGGCGCAAAACCGCTGAAACGTTTTGGAATGG    328
                          ||.||    .|..||||.|.||.|||    ||      |||| .|
BPUM_3014        274 TATCGATTTG----CAGGAGGCCCTAAGCCG----AA------GGAA-AG    308

BSNT_02773___    329 ACCATGCCAA----------GCACGGTGC-------GAAA-----GGCTG    356
                     ||||    ||          |.||||| |       ||||     |||||
BPUM_3014        309 ACCA----AAATACGGGAAGGAACGGT-CTGTGTATGAAATAGTCGGCTG    353

BSNT_02773___    357 GCTAAGACATGTGCTGGCCTACTTA----ATTGGTGCGGG---ACTATTG    399
                     |....|.|||   ||.|.|| ||||    ||.||.||.||   |||||| 
BPUM_3014        354 GACGCGGCAT---CTCGTCT-CTTATGTCATCGGAGCTGGTCTACTATT-    398

BSNT_02773___    400 GCAGGGATGAT-CTATTTTAT-CAATGACTCTGCCCGAACCGAGGCGTTG    447
                       .|||.| || ||||.|.|| |||..|     ||.||||.||.|     
BPUM_3014        399 --TGGGCT-ATCCTATCTCATCCAAGCA-----CCAGAACGGACG-----    435

BSNT_02773___    448 AGCGGCATTCTTAAAC--------------TGTGGACT-GTCATTATAGG    482
                      |..|||  ||.|.||              ||.|||.| |||   .||||
BPUM_3014        436 -GAAGCA--CTGATACAGCTAGCAAGAGTATGGGGAATGGTC---TTAGG    479

BSNT_02773___    483 CATTGACTTTC-TCATTACAGC--CAGCTATTTTATTTGGCCAAAAAAAG    529
                     |||||| |||| |||||  |||  |||||||.|.|||||||||||||||.
BPUM_3014        480 CATTGA-TTTCGTCATT--AGCATCAGCTATGTGATTTGGCCAAAAAAAC    526

BSNT_02773___    530 A---GAAAGCTTCGGCGAATCTCAG-GAGTTAA    558
                     |   |.||         |||.| || .||.|||
BPUM_3014        527 ACCCGCAA---------AATAT-AGCCAGCTAA    549


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