Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04477 and BPUM_3013
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_04477___mntA.1.24716.seq
# -bsequence dna-align/BPUM_3013___mntA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04477___mntA-BPUM_3013___mntA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04477___mntA-BPUM_3013___mntA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04477___mntA
# 2: BPUM_3013___mntA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1158
# Identity: 533/1158 (46.0%)
# Similarity: 533/1158 (46.0%)
# Gaps: 456/1158 (39.4%)
# Score: 924.5
#
#
#=======================================
BSNT_04477___ 1 ATGAGACGAGGGCTGATG--GCAGCAGTACTTTTTGCGA-CCTTTGCTTT 47
||| |.|| ||| |||||.| || .|||
BPUM_3013___m 1 ---------------ATGAAGAAG--GTA---TTTGCAATCC----GTTT 26
BSNT_04477___ 48 AACGGGATGCGGAACGGATTCA--GCCGGAAAAAGCGCTGATCAGCAATT 95
|||.|.| |.||||| ||| ||.||.|.| ||.
BPUM_3013___m 27 AACCGCA--------GTATTCATTGCC----------CTTATGATC-ATC 57
BSNT_04477___ 96 ACAAG-TG----AC--AGCGACAACATCTCAAATTGCCGATGCAGCAGAA 138
|||.| || || || |||.|| |||| ||| |.|
BPUM_3013___m 58 ACAGGCTGTTCTACTAAG---CAAAAT----AATT-CCG--------GCA 91
BSNT_04477___ 139 AACATCGGA-GGTAAGCATGTAAAAGTC------ACC--------TCTTT 173
||.|| || ||.| ||| |||||||| ||| |||||
BPUM_3013___m 92 AAGAT--GACGGCA--CAT-TAAAAGTCGTCACGACCTACTCCATTCTTT 136
BSNT_04477___ 174 A----------ATGGGACCGGGGGTTGATCCGCAC----CTTTACAAAGC 209
| |.||.|...||.|..|| |||| ||.|.||.|||
BPUM_3013___m 137 ATGACATTGTGAAGGAAGTAGGCGGAGA---GCACGTCTCTATTCACAGC 183
BSNT_04477___ 210 ----TTCCCA-AGGT---GACACGAAAAAATTAATGT------CTGCC-- 243
|||||| .||| |||.| |.||.|||.| |||||
BPUM_3013___m 184 ATTGTTCCCATTGGTACAGACCC----ACATGAATTTGATCCACTGCCAA 229
BSNT_04477___ 244 --------------------GATG------TTGTTCTGTACAGCGGGTTG 267
|||| |||||||.||.|..||.||.
BPUM_3013___m 230 AGGATGTTCAGCATACAACGGATGCAGACCTTGTTCTATATAATGGTTTA 279
BSNT_04477___ 268 CATTTGGA---AGGGAAAATGGAGGATGTGCTCCAAAA--------AATC 306
.|..|.|| |||||| .||.|| |.|.||||| ||||
BPUM_3013___m 280 AACCTTGAAACAGGGAA-----TGGCTG-GTTTCAAAAGCTGCTCGAATC 323
BSNT_04477___ 307 ----GGCGAACAACAACAATCGGCG-----GCA---GTAGC-----TGAG 339
|||.|..| |||.| ||| ||||| ||||
BPUM_3013___m 324 GAGTGGCAAGGA--------CGGGGATGATGCACCTGTAGCCGAAATGAG 365
BSNT_04477___ 340 -------GCC--ATTCCGAAAAATAAGCTTAT------------TCCTGC 368
|.| |.|| |||.|| |||| ||
BPUM_3013___m 366 TAAAGGTGTCAAAGTC--AAACAT----TTATCTTCAAAAGGACTC---- 405
BSNT_04477___ 369 GGGGGAAGGCAAGACGTTTGATCCCCACGTCTGGTTCA------------ 406
|||.||.||..| |||||.||.|..|||.|.|
BPUM_3013___m 406 ----GAAAGCCAGCAG---GATCCACATGCTTGGCTAAATGTCGAAAATG 448
BSNT_04477___ 407 GCATTCCGTTATGGATCT----ATGCGGTGGATGAAATTGAAGCGCAATT 452
|.||||.| |||| || ||||....||||.|.|| |||
BPUM_3013___m 449 GGATTCTG-TATG---CTAAAAATGCTAGAGATGCACTT--------ATT 486
BSNT_04477___ 453 CAGCAAAGCAATGCCTCAGCACGCAGATGCCTTTCG-GAAAAATGCCAAA 501
||.||....|||.||||...||| |..||.|| .||||||||..||
BPUM_3013___m 487 ----AAGGCGGACCCTGAGCATCAAGA-GGATTACGAAAAAAATGCAGAA 531
BSNT_04477___ 502 GAGTA---CAAAGAA--------GATT--------TGCAATATTTAGATA 532
|..|| ||||.|| |.|| .|||| .|||.|
BPUM_3013___m 532 GCCTATATCAAAAAACTTCAAACGCTTCATAATGAAGCAA----AAGACA 577
BSNT_04477___ 533 AGTGGTCGCGTAAAGAGATC----GCACATATTCCGGAGAAAAGCCGTGT 578
||| || |||| ||..|.| ||.||||..|||
BPUM_3013___m 578 AGT--TC---------GATCAGCTGCCAAAA-----GATAAAAAACGT-- 609
BSNT_04477___ 579 GCTTGTGACTGCTCATGATGCGTTTGCGTACTTTGGGAATGAGTATGGAT 628
||||||||...|.|.|..||.||...|||.||||...|||..||||||.
BPUM_3013___m 610 -CTTGTGACAAGTGAGGGAGCCTTCAAGTATTTTGCAGATGCTTATGGAC 658
BSNT_04477___ 629 TTAAGGTAAAAGGCCTGCA-------GGGA-CTCAGCACAGATTCGGACT 670
|..||| |||.| |||| .|||.||||||
BPUM_3013___m 659 TAGAGG--------CTGGATACATTTGGGAGATCAACACAGA-------- 692
BSNT_04477___ 671 ATGGATTAAGGGATGTTCAGGAGCTGG-----------------TTGATC 703
|.||.|||| |..|.|||| ||.||
BPUM_3013___m 693 --GAATGAAGG-------AACACCTGGACAAATGAAACGTATCATTCAT- 732
BSNT_04477___ 704 TTC-TGACAGAAAAACAAATAAAAGCTGTGTTCGTAGAAAGCAGTGT--A 750
||| |.|.|||..|.|||.||...||..|.|||.|.||||..||||| |
BPUM_3013___m 733 TTCGTCAAAGATCATCAAGTACCTGCGCTCTTCCTTGAAACAAGTGTCGA 782
BSNT_04477___ 751 TC----------TGAAAAATCAATCAATGCAG----TGGTG----GAAGG 782
|| || |||..|.||| ||.|| ||||| ||
BPUM_3013___m 783 TCAACGTAGCCTTG-AAAGCCTATC--TGAAGAAACTGGTGTTCCGA--- 826
BSNT_04477___ 783 CGCTAAAGAAAAAGGCCATACAGTCACAATCGGCGGTCAGCTTTATT--C 830
.|||||.||||| |||| |
BPUM_3013___m 827 --TTAAAGGAAAAG-----------------------------TATTCAC 845
BSNT_04477___ 831 GGATGCCATGGG--TGAAAAGGGCACAAAAGA---AGGCACATAC----- 870
.||..||||.|| .||||.|.| |||| ||.||..|||
BPUM_3013___m 846 TGACTCCATTGGAAAGAAAGGTG-----AAGATGGAGACAGCTACTATAA 890
BSNT_04477___ 871 ---GAAGGAATGTTCCGCCACAATATCAACACGA-TTACTAAAGCGCTTA 916
||.|.|||| .|||||..||||.| |||| ||||.||||.
BPUM_3013___m 891 GATGATGAAATG--------GAATATTGACACCATTTAC-AAAGGGCTTT 931
BSNT_04477___ 917 AATAA--- 921
.||.|
BPUM_3013___m 932 CATCATAA 939
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