Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04475 and BPUM_3012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_04475___mntC.1.24716.seq
# -bsequence dna-align/BPUM_3012___mntD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04475___mntC-BPUM_3012___mntD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04475___mntC-BPUM_3012___mntD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04475___mntC
# 2: BPUM_3012___mntD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1490
# Identity: 557/1490 (37.4%)
# Similarity: 557/1490 (37.4%)
# Gaps: 799/1490 (53.6%)
# Score: 992.0
#
#
#=======================================
BSNT_04475___ 1 ------------------ATGTTTGAA----AGTTTGTGGCTGC----AG 24
.|.|||||| .|||| .|.| ||
BPUM_3012___m 1 ATGGAATTTTTAACCGGACTCTTTGAATATGCGTTT----TTACAAAAAG 46
BSNT_04475___ 25 C----TTCAGCATCCGAATACACAGTGGGTGCTGGCCGGTACGC----TT 66
| ||.| ||||| |||.| ||||.|| ||
BPUM_3012___m 47 CGTTATTTA-CATCC-------------GTGAT----GGTAGGCATTATT 78
BSNT_04475___ 67 TTGCTCGGGACGGCAAGCGGTGTTTTGGGCAGCTTTGTGCTGCTGAGAAA 116
| ||||.||..|.|||.|||||.|
BPUM_3012___m 79 T---------------GCGGGGTCATTGGCTGCTTTAT------------ 101
BSNT_04475___ 117 GCAAAGTTTAATCGGCG-ATG----CGATGG-----CCCAT-TCA---GC 152
.|.|||| |||.| ||| .||||| .|||| ||| ||
BPUM_3012___m 102 ---CATTTTA--CGGGGCATGGCCTTGATGGGAGACGCCATATCACATGC 146
BSNT_04475___ 153 T---CTGCCGGGAGTGT-GCC-TCGCTTTTCTGTTCACCGGGCAAAAATC 197
| |||||.| |||| ||| ||.|||.|.|| |..||||..|||
BPUM_3012___m 147 TGTACTGCCAG--GTGTCGCCATCTCTTATATG----CTAGGCATTAAT- 189
BSNT_04475___ 198 ACTGCCTTTCTTTTTG------------CTGG-GT----GCGGCGCTCGC 230
|||.|.|||| |||| || .|.|||.|.|
BPUM_3012___m 190 ------TTTTTCTTTGGAGCCGTCTTAACTGGCGTATTAACAGCGATTG- 232
BSNT_04475___ 231 CGGACTGCTCGGA-ACATTTTGT-ATTCAACTGATTCCTCGGCTTTCAAA 278
||| ||||| || || |.||||...|.|| || .|||||
BPUM_3012___m 233 -GGA----TCGGATAC-----GTGAGTCAAAACAGTC----GC-ATCAAA 267
BSNT_04475___ 279 AACAAAGGAGGACTCGGCGATCGGGATTGTTCTTTCTGTGTTTTTTGGCG 328
| |.|||||.|||||.|||||||| .|||...|.|||||
BPUM_3012___m 268 A-------ATGACTCTGCGATTGGGATTGT--CTTCACCGCTTTTT---- 304
BSNT_04475___ 329 TC------GGGATCATTCTGCTGACATATATTCAGCAACAGGGGGCGGGA 372
|| |||||||||.||.|.||||.|.| |..|
BPUM_3012___m 305 TCTCAATTGGGATCATTTTGATCACATTTTT---------------GAAA 339
BSNT_04475___ 373 AG--CCAAAGCGGGCTTGAT------TCTTTTTT--ATTCGGCCAGGCTG 412
|| ||| |.|.||.|| ||||.||| |..||..|..||||
BPUM_3012___m 340 AGTTCCA----GTGATTTATATCATATCTTGTTTGGAAACGTTCTAGCTG 385
BSNT_04475___ 413 CTTCATTGGTCAGGCAGGATATCATCCTTAT-TGCAGGAATATCCGCT-- 459
||| .||||| ||.|| || .|||.|| ||||
BPUM_3012___m 386 -TTC---------------GATCAT-CTGATATG-TGGATTA--CGCTTG 415
BSNT_04475___ 460 ------GC-----TCTGCTGCT--CCTATGT-ATTGTTTTCTTTAAGGAA 495
|| |.|.||||| || || ||.|||||||..||.|||
BPUM_3012___m 416 GCATCGGCATTTTTATCCTGCTGGCC---GTCATCGTTTTCTACAAAGAA 462
BSNT_04475___ 496 TT--TACATTGATTACTTTTGATC-----------TCGCGTTTGCAAAGG 532
|| | |||| |.|.|.||||||| ||| |||| |.|
BPUM_3012___m 463 TTGCT-CATT-AGTTCATTTGATCCGGTCATTTCTTCG-GTTT----ACG 505
BSNT_04475___ 533 GATTA-GGAATCCCGGTGCG------TTTTTTAAACGGGCTTTTG-GCTT 574
|.||| .||||| ||..| |.|||| ||..|| .|||
BPUM_3012___m 506 GTTTACCGAATC---GTATGATCCATTATTTT-------CTCATGACCTT 545
BSNT_04475___ 575 GTCTGA---TTGT---CTGTGCTGTCGTCATTGGGCTTCAGACTGTTGGT 618
|| ||| |||| |..|||| ||| ||.||.|||||.||.
BPUM_3012___m 546 GT-TGACCCTTGTGACCGTTGCT----TCA-----CTGCAAACTGTGGGG 585
BSNT_04475___ 619 GTGATACTAATGGCG--GCTATGCTGATTACACCTGCCATAG---CTGCG 663
.|.||.|| ||.|| ||||||||.|||||.||.|| || |||||
BPUM_3012___m 586 ATTATTCT--TGTCGTTGCTATGCTTATTACGCCGGC---AGCCACTGCG 630
BSNT_04475___ 664 AGATATTGGACCGAACGATTAACCGGGATGATCGTCATTGCCGGGATTAC 713
||| |..|||||.|
BPUM_3012___m 631 ---TAT---------CTTTTAACAG------------------------- 643
BSNT_04475___ 714 AGGCGGGGTCAGCGGAGTGGCCGGAACCCTGCTTAGCACCACGATGAAGG 763
||| ||
BPUM_3012___m 644 -------------------------------------ACC--------GG 648
BSNT_04475___ 764 GAATGGCGACAGGGCCATTAATGATCT---TATCTGCAACGCTGCTCTTT 810
..|||| .|.||||||| ||||||
BPUM_3012___m 649 CTATGG-----------ATCATGATCTATCTATCTG-------------- 673
BSNT_04475___ 811 CTTTTTTCAATGATTTGCGCGCCTAAGCGGGG-ATTGGCTGCTAAATCCA 859
||||||| ||||| |.|..|||||
BPUM_3012___m 674 CTTTTTT--------------------CGGGGCAGTTTCTGCT------- 696
BSNT_04475___ 860 TAAGGCTGATGAGGCTGCGGCGCAGAACAAGCAGGGAGCAAGTGCTTTTG 909
|.|||.|.|| |||
BPUM_3012___m 697 ------------------GTCGCCGGAC-------------------TTG 709
BSNT_04475___ 910 G----AGATTTATGAACAATATGAAAAGAATAATCT----------TTGT 945
| ||.||||.|.|.|||.|| |.|||| |.||
BPUM_3012___m 710 GACTTAGTTTTACGTATAATTTG-------TCATCTGGCGCTTCTATCGT 752
BSNT_04475___ 946 GTAACTGTTGAAAGTGTAAGAAAGAAAAGACGC--CTATCCTCTTCATT- 992
| ||| |.||| |||| ||.|||
BPUM_3012___m 753 G---CTG---------------------GTCGCGACTAT----TTTATTC 774
BSNT_04475___ 993 ----ATGCCTT-----------------AAGGCATTAAATGACTTGGAAC 1021
.|||||| ||||||||..|||
BPUM_3012___m 775 GGGAGTGCCTTTATCTTTTCACCAAAACAAGGCATTCTATG--------- 815
BSNT_04475___ 1022 AAGAGAGGTGCATTGAGCGTATCGAAAATGGGATTTGGCAAATCACAAGC 1071
|||| .|||| ||||| |.||.||.||.|
BPUM_3012___m 816 --GAGA---TCATT----------AAAAT---------CTAAACAAAAAC 841
BSNT_04475___ 1072 AAAGG--GATAGAAAAAGGCTATCACACAGCTTTGAAGCAGCGGATGTAT 1119
.||.| |.|| |||||||.| ||| |.|||
BPUM_3012___m 842 GAACGCAGCTA-AAAAAGGAT-------------------GCG--TCTAT 869
BSNT_04475___ 1120 G-AAGTGTATCTCATGCATGAAATGGACCTTGCCAATATAGAATCCGATC 1168
| ||
BPUM_3012___m 870 GTAA---------------------------------------------- 873
BSNT_04475___ 1169 AGGACTGCTTTGACCCGGACCGTTTACCGAGAGAAACGAGAGAGCGGCTT 1218
BPUM_3012___m 873 -------------------------------------------------- 873
BSNT_04475___ 1219 TATTCACTCTTAAAGCTGTATGGACGGATGCCTGAGCATCGAAAAGCGTC 1268
BPUM_3012___m 873 -------------------------------------------------- 873
BSNT_04475___ 1269 TCATGATGCCAAGAAGGGACAGATCGCAAATGAGTTTTGA 1308
BPUM_3012___m 873 ---------------------------------------- 873
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