Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04999 and BPUM_3010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_04999___copB.1.24716.seq
# -bsequence dna-align/BPUM_3010.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04999___copB-BPUM_3010.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04999___copB-BPUM_3010.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04999___copB
# 2: BPUM_3010
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2232
# Identity: 1454/2232 (65.1%)
# Similarity: 1454/2232 (65.1%)
# Gaps: 264/2232 (11.8%)
# Score: 4350.5
#
#
#=======================================
BSNT_04999___ 1 GTGAAACAG---------GAATACGTTCTGGACGGTTTGGATTGCAGCAA 41
.|||||.|| ||||||||..|..|||||.|.||||||.||||
BPUM_3010 1 ATGAAAAAGATAAAGGATGAATACGTATTAAACGGTCTTGATTGCGGCAA 50
BSNT_04999___ 42 TTGTGCCCAAAAAATCGAAAATGGAGTCAAAGGCATAAAAGGCATTGA-C 90
.|||||.|..|||||.||||..||.|||| || ||||.|.||.|| .
BPUM_3010 51 CTGTGCACGTAAAATAGAAACAGGTGTCA---GC--AAAATGGATGGAGT 95
BSNT_04999___ 91 GGA----TGCGCGGTAAATTTTGCGGCAAGCACCTTAACTGTCTC---AG 133
||| |||.|.||.||.||||||.||.|||||||.||||||.| .|
BPUM_3010 96 GGAAGCTTGCTCTGTTAACTTTGCGACAGGCACCTTGACTGTCACCCATG 145
BSNT_04999___ 134 CCGATGGGAAAGAAGAGCAATGGGTCACGAATAAAGTAGAGAAAAAAGTG 183
|.|||..|.|||| |.|.||| .||||.|.|.|.||.||||..||.
BPUM_3010 146 CAGATAAGCAAGA--AACGATG----TCGAAGAGAATTGAAAAAACTGTT 189
BSNT_04999___ 184 AAATCAATTGATCCGCATGTAACGGT-TCGCCAAAAG--------CAT-A 223
.||||.||.||.||.|||||.|..|| ||.||.|||| ||| |
BPUM_3010 190 CAATCCATAGAACCTCATGTGAGTGTATCACCGAAAGAAGAGGGACATCA 239
BSNT_04999___ 224 TAAAGAAATCAGCTGATGATGGCTATCG-------TAATCGAATGGTCAA 266
|.|.| |||| ||||.|||| ..|| ||| |||.| |.
BPUM_3010 240 TCACG--ATCA--TGATCATGG--GACGAAAAATTTAA--GAACG---AT 278
BSNT_04999___ 267 TATGCTG--ATCAGAATGGCGGCGGCTGTCATTCTCGGCGCAACGGCATA 314
|.|.||| ||.| |.|||||| .||.|||||| ||..||.|.||
BPUM_3010 279 TGTACTGAAATTA-ATTGGCGG-AGCAGTCATT---GGAACAGCCGC--- 320
BSNT_04999___ 315 TTTGGTTCATTCGGGAA------CCATTGAACTTTTCCTT---TTCCTCG 355
||..||.||.|..||| ..|||.|| .|||||| |||.|||
BPUM_3010 321 -TTTCTTTATCCCTGAAGATGGTGTATTAAA--GTTCCTTATGTTCTTCG 367
BSNT_04999___ 356 CTGCTTATTTGATCATCGGCGGTGACATTATGAT---------CCGCGCA 396
|.||.|||||..|..|||||||||| |.||.| ||
BPUM_3010 368 CAGCATATTTACTGGTCGGCGGTGA---TGTGGTTTTTAAAGCCC----- 409
BSNT_04999___ 397 GTCAAAAACATCATCCGCGGTCAGGTGTTTGATGAGCATTTCTTAATGGC 446
|.|||||.|||.|.||||||||.||.|||||||||.|.|||||||||.|
BPUM_3010 410 -TGAAAAATATCGTGCGCGGTCAAGTATTTGATGAGAACTTCTTAATGAC 458
BSNT_04999___ 447 TCTTGCCACAATCGGCGCCTTTCTGATTCAGCAATACCCTGAGGGCGTCG 496
..||||.|||.|.|||||.|||.|||||||||||||.||.||||...|.|
BPUM_3010 459 CATTGCAACAGTTGGCGCTTTTGTGATTCAGCAATATCCAGAGGCACTGG 508
BSNT_04999___ 497 CAGTTATGCTGTTTTATCAAATCGGTGAGCTTTTTCAAGGTGCCGCGGTC 546
||||.|||||.|||||.|||||.||.|||||.||.|||||.||.||.||.
BPUM_3010 509 CAGTGATGCTCTTTTACCAAATTGGAGAGCTCTTCCAAGGGGCGGCAGTA 558
BSNT_04999___ 547 AGCCGTTCCAGAAAATCAATTAGTGCGTTAATGGACATACGGCCTGATTA 596
|.||||||.|||...||||||||||..||||||.|.|||||.||.||.||
BPUM_3010 559 AACCGTTCAAGACGCTCAATTAGTGAATTAATGAATATACGTCCAGAATA 608
BSNT_04999___ 597 CGCCAATCTCAAAACAAAGAACGGCATCG-AACAGGTTTCCCCGGAGGAC 645
.||.||||| ||||....|||..|.|.|| ||.|.||....||.||.||.
BPUM_3010 609 TGCGAATCT-AAAAGTCGGAAATGAAACGAAAAAAGTGAATCCAGAAGAA 657
BSNT_04999___ 646 GTTCAGACAGGAGACATCATTGTGGTTAATCCGGGAGAAAGCATACCCCT 695
||..|..|.||.|||...|||||.||.||.||.||.||||..||.||.||
BPUM_3010 658 GTGAAAGCCGGGGACCGTATTGTCGTGAAGCCTGGTGAAAAAATTCCGCT 707
BSNT_04999___ 696 GGACGG------TAAGGTCGTGCAAGGGTCAGCGATGGTTGATACATCTG 739
|||.|| || ||| ||||.|...|..|.||||||||.||||
BPUM_3010 708 GGATGGGCTTGTTA---TCG---AAGGATTCTCTCTTGTTGATACCTCTG 751
BSNT_04999___ 740 CTTTAACAGGTGAGTCCGTTCCGAG------AAAAGCTGCGGTAGGACAA 783
|..|||||||.|||||.||.|||.| |.|||| ||||.||
BPUM_3010 752 CACTAACAGGGGAGTCAGTGCCGCGGGATGTAGAAGC------AGGAAAA 795
BSNT_04999___ 784 GATGTAATGTCAGGCTTTATCAATCAAAACGGCGTTCTGCATATTGAAGT 833
||.||..|..||||.|||.|.|||||||||.|..|.||..|.||||||||
BPUM_3010 796 GAGGTTCTTGCAGGATTTGTGAATCAAAACAGTATACTTGAAATTGAAGT 845
BSNT_04999___ 834 -CACAAAGAGCTATCAA--GAATCAGCAGTATCAAAAATATTAGACTTGG 880
||.|||||| |.|| |||||.||.||..|.|||||.|||||.||||
BPUM_3010 846 CCAAAAAGAG---TTAAGCGAATCGGCCGTGACGAAAATTTTAGATTTGG 892
BSNT_04999___ 881 TTCAGAATGCGAGCAGCCGTAAAGCCCGGACAGAAAACTTTATCACGAAG 930
||.|||||||.||||||||.|||||.|.|||||||||.||.|||||.|||
BPUM_3010 893 TTGAGAATGCAAGCAGCCGAAAAGCACAGACAGAAAATTTCATCACAAAG 942
BSNT_04999___ 931 TTTGCCAAGTATTATACACCTGCTGTTGTGATCATCGCGGTATTGCTGGC 980
|||||.||.|||||||||||.|||||.||..|..||||..|||||||.||
BPUM_3010 943 TTTGCAAAATATTATACACCGGCTGTCGTCGTGCTCGCCTTATTGCTTGC 992
BSNT_04999___ 981 CTTTGTTCCGCCGCTTGTTCTTTC-TGGCGCCGCGC---TTTCCGATTGG 1026
.|||||.||.|||||..||.||.| | |.||.| |.||.||.|||
BPUM_3010 993 TTTTGTGCCACCGCTACTTATTCCAT----CAGCACAATTGTCTGACTGG 1038
BSNT_04999___ 1027 GTGTACCGCGCGCTTATCTTTTTAGTGATTTCTTGTCCTTGTGCGCTTGT 1076
||||||||.||.|||.|||||.|.||.|||||||||||||||||.|||||
BPUM_3010 1039 GTGTACCGGGCACTTGTCTTTCTCGTCATTTCTTGTCCTTGTGCTCTTGT 1088
BSNT_04999___ 1077 TGTCTCCATTCCGCTCGGTTTCTTCGGCGGAATCGGAGCGGCCTC-AAAG 1125
|||.||||||||..|.||.||.|||||.|||||.||.||.||.|| |||.
BPUM_3010 1089 TGTATCCATTCCATTAGGGTTTTTCGGGGGAATTGGGGCAGCGTCTAAAC 1138
BSNT_04999___ 1126 GCCGGAGTGCTTGTAAAGGGAAGCAATTATTTAGAAGCTTTGAATCAAGT 1175
| .||..|.|||||.||.||.||.||.|||||||||||.||.|||...||
BPUM_3010 1139 G-AGGCATCCTTGTCAAAGGCAGTAACTATTTAGAAGCATTAAATTCTGT 1187
BSNT_04999___ 1176 CAAATACGCGGTGTTTGATAAAACGGGAACACTAACAAAAGGAAGCTTTG 1225
.|||||.|||||.||||||||.||.||.||.||.||||||||||.||||.
BPUM_3010 1188 GAAATATGCGGTATTTGATAAGACAGGCACGCTCACAAAAGGAAACTTTA 1237
BSNT_04999___ 1226 AAGTGACAGAAAT---CAAACCCGCGGAAGGTTTTACAA-AGGATAGATT 1271
.||||||..|.|| ||.|.|| || |.|||| .||..|||
BPUM_3010 1238 CAGTGACCAATATTTCCACAGCC-----AG---TGACAAGTGGTCAGA-- 1277
BSNT_04999___ 1272 ACTTGAAGCG------------GCGGCA-TACGCTG-AGCTTCATTCACA 1307
.||||.| ||.||| || ||.| ||| .|||||...
BPUM_3010 1278 ---AGAAGAGCTGCTTTCTTTTGCCGCACTA-GCAGAAGC-CCATTCCTC 1322
BSNT_04999___ 1308 GCATCCGATTGCTGAATCTGTGCGTAAAGCTTACGGGAAAATGCTTTCCT 1357
.|||||.|||||.||||| |..||||| |||.|.|..||||.||.
BPUM_3010 1323 TCATCCTATTGCAGAATC---GATTAAAG----CGGCATACAGCTTACCA 1365
BSNT_04999___ 1358 C-CGATG------AGATTGAGTCATACGAAGAAATCTCCGGTCACGGCAT 1400
| .|||| ||||.||..||||.||.||.|||.|.||.||.||.||
BPUM_3010 1366 CTTGATGAAAGCCAGATCGAAGCATATGAGGATATCGCGGGACATGGAAT 1415
BSNT_04999___ 1401 TTTTGCAAAGGTAAATGGA-AATGAG-----ATC----CTTGCCGGGAAT 1440
||||..|| .||.|| .|| |||..||||||.
BPUM_3010 1416 -----------TAAAGCGACCATCAGCGGTTCTCACGTCTTAGCGGGAAA 1454
BSNT_04999___ 1441 AAAAAGC-TCATGGAAAGAGAACAAATTGAGGATGTCCCGGATGAAAATG 1489
..|..|| |.|||||..|||||...|||| ||| |||||||.|
BPUM_3010 1455 TCACCGCTTGATGGAGCGAGAAGGCATTG----TGT-----ATGAAAAAG 1495
BSNT_04999___ 1490 CTGGAACAATCGTACACGTTG-----CTGTTGATCAACG----CTATGCC 1530
....||.||.||.|..||||| .||..|||.|||| .|.||||
BPUM_3010 1496 AAAAAAGAAGCGGAACCGTTGTTTATATGGCGATTAACGGTGAATTTGCC 1545
BSNT_04999___ 1531 GGAGCAATCATCATAGCGGATGAGATAAAGGAAGACGCAGCACAAGCGGT 1580
|||.||||..|.||.||.||.||..|.||.||.||.|||....||||.||
BPUM_3010 1546 GGATCAATTTTGATCGCAGACGAATTGAAAGACGATGCAATCGAAGCCGT 1595
BSNT_04999___ 1581 TGCTGATCTGAAGTCGCTTGGGA-TCAAACAGACAGCTATGCTGACGGGT 1629
..|||.|.|.||..||..|||.| ||||||.|.| |||||.||.|||
BPUM_3010 1596 ATCTGCTTTAAAAGCGTCTGGTATTCAAACCGTC----ATGCTCACAGGT 1641
BSNT_04999___ 1630 GATTCGAAACAAACGGGAGAAGCCGTCGGAAAACAGCTTGGGATTGGTGA 1679
|||.|.||||||...|||...||.||||..||.||..||||.||||.|||
BPUM_3010 1642 GATGCTAAACAAGTCGGAACTGCGGTCGCCAAGCAAATTGGCATTGATGA 1691
BSNT_04999___ 1680 GGTATATGCAGAGCTGCTGCCGCAAGATAAAGTCGCGCAGGTCGAAG-CA 1728
.|||.|||||||..|..|.||||||||||||||..||.|..|.|||| .|
BPUM_3010 1692 AGTACATGCAGAATTATTACCGCAAGATAAAGTAACGAAATTAGAAGAAA 1741
BSNT_04999___ 1729 TTG----GAAGCTAAGCTTTCACCTAATGAAAAACTCATT-TTTGTCGGT 1773
||| ||| .||| .|.|||.|.|||||.|| ||| |||||.||.
BPUM_3010 1742 TTGATCAGAA--AAAG---GCGCCTCAAGAAAAGCT-ATTATTTGTTGGG 1785
BSNT_04999___ 1774 GACGGCATCAATGATACGCCGGTGCTTGCCCGCGCAGATATAGGGATCGC 1823
||||||||.||||||||.|||||..|.||..|.||.||.|||||.||.||
BPUM_3010 1786 GACGGCATTAATGATACACCGGTATTAGCAAGAGCGGACATAGGAATTGC 1835
BSNT_04999___ 1824 GATGGGAGGCCTTGGCTCAGACGCCGCAGTAGAAGCCGCAGACATCGTGC 1873
.|||||.||.|||||.|||||.||.||.||.|||||.||.||.||.||..
BPUM_3010 1836 AATGGGCGGGCTTGGTTCAGATGCAGCTGTCGAAGCGGCTGATATTGTCA 1885
BSNT_04999___ 1874 TGATGACAGATCAGCCGTCAAAAATAGCGGAAGCGAT-----TCGGATTG 1918
|.|||||.||.|||||..||||..||||.|||||.|| || |
BPUM_3010 1886 TCATGACGGACCAGCCAACAAAGGTAGCAGAAGCCATCGCTGTC-----G 1930
BSNT_04999___ 1919 CGAAACGGACACGGCGAATCGTGTGGCAAAACATCGGCTTTGCTTTAGGT 1968
|.|||||.|||.|..|.||.||.|||||.||.||||..|||||..|.||.
BPUM_3010 1931 CAAAACGAACAAGAAGGATTGTCTGGCAGAATATCGCATTTGCCCTTGGC 1980
BSNT_04999___ 1969 GTGAAAGCGATCTTTCTCATTCTTGGTGCATTTGGAATTGCGACCATGTG 2018
.|.||||..|||||.||..|.||.||||||||.||.|||||.||.|||||
BPUM_3010 1981 ATTAAAGGCATCTTCCTTTTACTCGGTGCATTCGGTATTGCAACGATGTG 2030
BSNT_04999___ 2019 GGAAGCGGTTTTCTCAGATGTCGGCGTTACACTGCTTGCTGTGGCGAACG 2068
||||||.||.|||||.||||||||.||.||..|.||.|||||....||.|
BPUM_3010 2031 GGAAGCCGTCTTCTCGGATGTCGGTGTCACCGTACTCGCTGTTTTAAATG 2080
BSNT_04999___ 2069 CCATGCGCGTCATGCGTCTCAAAAACAAATAA 2100
|.|||.|.|||||| ||||||
BPUM_3010 2081 CGATGAGGGTCATG------------AAATAA 2100
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