Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04996 and BPUM_3009
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_04996___bdbD.1.24716.seq
# -bsequence dna-align/BPUM_3009___bdbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04996___bdbD-BPUM_3009___bdbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04996___bdbD-BPUM_3009___bdbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04996___bdbD
# 2: BPUM_3009___bdbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 762
# Identity: 455/762 (59.7%)
# Similarity: 455/762 (59.7%)
# Gaps: 168/762 (22.0%)
# Score: 1210.5
#
#
#=======================================
BSNT_04996___ 1 GTGAAAAAGAAA---CAGCAGTCTTCTGC---GAAATTCGCGGTCAT--- 41
||||..|||||| .|.||.|||||..| .|||||.||.|||||
BPUM_3009___b 1 GTGAGTAAGAAAAATAATCAATCTTCATCCATTAAATTTGCTGTCATTTT 50
BSNT_04996___ 42 ---CCTTA----------------CGGT-TGTGGTTGTTGT-ATTG---- 66
|.||| |||| |.| ||||||| ||||
BPUM_3009___b 51 AACCATTATTGCCGCTCTTCTCATCGGTATAT--TTGTTGTGATTGGAAA 98
BSNT_04996___ 67 CTAG--CAGCCATTGTCATCATTAATAA-CAAAACGGAACAAGGTAATGA 113
|.|| ||||| ||.|| ||.| |||| || |||
BPUM_3009___b 99 CAAGAACAGCC------------AAGAAGCACA----AACA--GT--TGA 128
BSNT_04996___ 114 TGCGGTGTCCGGGCAGCCGTCTATCAAAGGGCAGCCTGTGCTTGG---CA 160
|.|..||||.||.||..||||.||.|||||..|.|| ||
BPUM_3009___b 129 ---------CAGTAAGCCTTCGATTCAAGGACAACCTGTCATAGGAGACA 169
BSNT_04996___ 161 AGGACGATGCACCGGTAACTGTAGTAGAATTCGGAGATTACAAATGTCCG 210
|..|||..|||..|..|| |.||.||.||.|||||.||||||||||||
BPUM_3009___b 170 AAAACGCAGCAGTGCAAA---TTGTCGAGTTTGGAGACTACAAATGTCCG 216
BSNT_04996___ 211 TCTTGCAAGGTGTTT--AACAGTGACATCTTTCCAAAAATACAAAAAGAC 258
||.||.||....||| |||| |||||.||.||||||.|..||..||||
BPUM_3009___b 217 TCATGTAAATCATTTGAAACA--GACATTTTCCCAAAACTGAAAGCAGAC 264
BSNT_04996___ 259 TTTATTGATAAGGGCGATGTGAAATTTTCTTTCGTGAACGT-------CA 301
|..||.|||||.||||||||....||.||.||..|.|||.| |.
BPUM_3009___b 265 TACATAGATAAAGGCGATGTATCCTTCTCATTTATTAACTTACCACTGCC 314
BSNT_04996___ 302 TGTTCCATGGAAAAGGTTCAAGGTTAGCGGCTCTTGCATCTGAAGAAGTA 351
|||| ||||||.|.||..||..||||||.||.||.||.|||||||||||.
BPUM_3009___b 315 TGTT-CATGGAGATGGCGCAGTGTTAGCAGCACTAGCTTCTGAAGAAGTG 363
BSNT_04996___ 352 TGGAAGGAAGACCCTGACTCTTTTTGGGATTTCCATGAAAAGCTGT---T 398
|||||.|||||.||..|....||.||||..||||||| ||||||| |
BPUM_3009___b 364 TGGAAAGAAGATCCAAAAAACTTCTGGGCATTCCATG--AAGCTGTCTAT 411
BSNT_04996___ 399 CGAAAAACAGCCGGATACGGAA-CAGGAATGGGTAACCCCAGGCCTCCTT 447
| ||..||||||.||||..||| || ||||||||.|| ||||.||.
BPUM_3009___b 412 C-AAGCACAGCCAGATAGTGAAGCA-GAATGGGTGAC-----GCCTGCTA 454
BSNT_04996___ 448 GG-----TGATCTTGC-AAAAAGCACCACAAAGATAAAACCTGAGACG-- 489
.| |||.||.|| |||||| ||.|||||.|| |||.|||
BPUM_3009___b 455 AGCTGACTGAACTGGCGAAAAAG-ACAACAAAAAT------TGATACGGA 497
BSNT_04996___ 490 ----CTCAAGGAAAATC-TTGAT--AAGGAAACATTCGCTTCTCA----- 527
|||| ||.||| ||.|| |||.||| |.|.|||
BPUM_3009___b 498 CAAACTCA---AAGATCATTTATCAAAGAAAA------CGTATCAGCCGC 538
BSNT_04996___ 528 AGTGGAAAAGGATTCTGACCTTAATCAAAAAATGAAC--ATAC------- 568
||..|||.| |.||| |||||.....||||| ||||
BPUM_3009___b 539 AGCTGAACA-----CAGAC---AATCAGCTTGTGAACAAATACAAAGTGA 580
BSNT_04996___ 569 AGGCAACACCGACGAT-----TTACGTCAATGATAAAGTGATCAAAAATT 613
|..|||||||.||||| ||| .||||.|..|||| || ||||||
BPUM_3009___b 581 ATTCAACACCAACGATCTTTATTA--ACAATAAACAAGT--TC-AAAATT 625
BSNT_04996___ 614 TTGCGGATTATGATGAAATCAAAGAGACAATAGAAAAAGAGCTGAAAGGG 663
|....||.|||||||||||||||||...|||.||..||||.||.||||||
BPUM_3009___b 626 TCTATGACTATGATGAAATCAAAGAATTAATTGATCAAGAACTTAAAGGG 675
BSNT_04996___ 664 AAGTAA------ 669
|||.||
BPUM_3009___b 676 AAGAAATCATGA 687
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