Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04981 and BPUM_3004

See Amino acid alignment / Visit BSNT_04981 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_04981___yvgN.1.24716.seq
#    -bsequence dna-align/BPUM_3004.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04981___yvgN-BPUM_3004.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04981___yvgN-BPUM_3004.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04981___yvgN
# 2: BPUM_3004
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 870
# Identity:     590/870 (67.8%)
# Similarity:   590/870 (67.8%)
# Gaps:         111/870 (12.8%)
# Score: 2044.5
# 
#
#=======================================

BSNT_04981___      1 ------------------------------------------------AT      2
                                                                     ||
BPUM_3004          1 ATGGTCAAAAGCTTGAATGATACCGTAACACTGAATAACGGAGTAGAAAT     50

BSNT_04981___      3 GCCTTGGTTCGGTCTGGGTGTTTTTAAAGTAGAAAATGGTAATGAAGCGA     52
                     |||||||||.|||.|.|||||.||.|||||.||..|.||.|||.|||.|.
BPUM_3004         51 GCCTTGGTTTGGTTTAGGTGTATTCAAAGTGGAGGACGGCAATCAAGTGG    100

BSNT_04981___     53 CTGAATCAGTGAAAGCGGCAATTAAAAATGGCTATCGCAGCATTGATACA    102
                     ..||..|.||.|||||.||.||...|||.||.||.|||||.||||||||.
BPUM_3004        101 TAGATGCCGTAAAAGCAGCCATACGAAACGGATACCGCAGTATTGATACG    150

BSNT_04981___    103 GCAGCGATCTACAAAAATGAAGA-AGGCGTTGGCATCGGGATTAAAGAAT    151
                     ||.||..|.||.||||||| ||| ||||||.||||..|..||||||||||
BPUM_3004        151 GCTGCCGTTTATAAAAATG-AGACAGGCGTAGGCAAAGCAATTAAAGAAT    199

BSNT_04981___    152 CCGGTGTGGCAAGAGAAGAGCTCTTCATCACATCAAAAGTGTGGAATGAA    201
                     |.||.|||..|.|||||||..|.|||||.||.||.|||||.||||||...
BPUM_3004        200 CTGGCGTGAAACGAGAAGATTTGTTCATTACGTCTAAAGTATGGAATACG    249

BSNT_04981___    202 GAGCAAGGCTACGAAACAACGCTTGCTGCCTTTGA--AAAGAGTCTGGAA    249
                     ||.||||||||.||.|.|.||||.|||||.|||||  .|||   ||.|||
BPUM_3004        250 GATCAAGGCTATGACAAAGCGCTGGCTGCATTTGACGCAAG---CTTGAA    296

BSNT_04981___    250 -AGATTGCAG--CTTGATTACTTAGATTTATATTTGATCCACTGGCCTGG    296
                      .||||  ||  |||||||||.||||..|.|||||||||||.||||||||
BPUM_3004        297 TCGATT--AGGTCTTGATTACCTAGACCTCTATTTGATCCATTGGCCTGG    344

BSNT_04981___    297 --CAA----AGATAAATATAAAGATACATGGCGCGCGCTTGAAAAGCTGT    340
                       |||    |||.|.||.||||||.||||||||.||||||||.|||||.|
BPUM_3004        345 TCCAAATGCAGAAACATTTAAAGACACATGGCGTGCGCTTGAGAAGCTTT    394

BSNT_04981___    341 ACAAAGACGGCAAAATCCGCGCGATCGGCGTCAGCAACTTCCAAGTTCAT    390
                     ||||.||.||.|||.|..|.||.||.|||||||||||||||.|..||||.
BPUM_3004        395 ACAAGGATGGGAAAGTGAGAGCCATTGGCGTCAGCAACTTCTATATTCAG    444

BSNT_04981___    391 CATTTAGAAGAGCTGTTGAAAGATGCTGA----AATCAAACCGATGGTGA    436
                     |||||||||||||||||.||||||||.||    ..||.|.||    ||||
BPUM_3004        445 CATTTAGAAGAGCTGTTAAAAGATGCAGAGGTTGTTCCAGCC----GTGA    490

BSNT_04981___    437 ACCAAGTTGAGTTTCACCC-------TCGCTTGACGCAAAAAGAATTAAG    479
                     ||||||||||.|||||.||       .|.||||.|       |||.||.|
BPUM_3004        491 ACCAAGTTGAATTTCATCCGAAACTGACACTTGTC-------GAACTACG    533

BSNT_04981___    480 AGATTACTGC-AAAGCGCAAGGCATTCAGCTGGAAGCGTGGTCTCCGCTC    528
                     ..|.|| ||| ||||...||||||||||..|.|||||||||||||||||.
BPUM_3004        534 TCAATA-TGCAAAAGAAAAAGGCATTCAAATTGAAGCGTGGTCTCCGCTT    582

BSNT_04981___    529 ATGCAGGGACAGCTTTTGGATAACGAAGTACT----GACACAGATTGCTG    574
                     |||||.|||.||||.||.|||.|.||.|||.|    |||    ||.||||
BPUM_3004        583 ATGCAAGGAAAGCTATTAGATCATGACGTATTAAAGGAC----ATGGCTG    628

BSNT_04981___    575 AAAAACACAATAAATCTGTGGCTCAAGTGATTTTGCGCTGGGATCTGC--    622
                     .|....||||.||||||||.||.|||||.||.|||||.||||||||.|  
BPUM_3004        629 CACGCTACAACAAATCTGTTGCGCAAGTCATCTTGCGTTGGGATCTACAA    678

BSNT_04981___    623 AGCATGAAGTTGTAACCATTCCAAAATCCATTAAAGAACACCGTATCATC    672
                     |||  |..||.||.||.|||||.|||||.||.||.|||.|.|||||.|..
BPUM_3004        679 AGC--GGCGTCGTGACGATTCCTAAATCAATCAACGAAGAACGTATTAAA    726

BSNT_04981___    673 GAAAACGCTGATATTTTTGATTTCGAATTGTCTCAAGAAGACATGGACAA    722
                     .||||.||.||||||||||||||||||.|.||..|||||||||||||.||
BPUM_3004        727 CAAAATGCAGATATTTTTGATTTCGAACTTTCCAAAGAAGACATGGAAAA    776

BSNT_04981___    723 AATTGACGCATTAAATAAAGATGAGCGTGTCGGCCCAAATCC-----TGA    767
                     ||||||.||||||||.||..|.||.||.||||||.|.|||||     .||
BPUM_3004        777 AATTGATGCATTAAACAATAACGAACGCGTCGGCTCGAATCCAGAGACGA    826

BSNT_04981___    768 TGA-GCTTCTGTTTTAA---    783
                     ||| |.||..||||.||   
BPUM_3004        827 TGACGGTTGGGTTTGAATAA    846


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04981 and BPUM_3004

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
