Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04976 and BPUM_3001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_04976___yvgJ.1.24716.seq
# -bsequence dna-align/BPUM_3001.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04976___yvgJ-BPUM_3001.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04976___yvgJ-BPUM_3001.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04976___yvgJ
# 2: BPUM_3001
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity: 1291/2010 (64.2%)
# Similarity: 1291/2010 (64.2%)
# Gaps: 315/2010 (15.7%)
# Score: 3883.5
#
#
#=======================================
BSNT_04976___ 1 ATGAAAGGAACCTTTTTTC-ACAATCAGCGGTTTTTATGT-TTTTCGATC 48
||||||| |.|||||| |.|||||..|||||||| || |.|||.|||
BPUM_3001 1 ATGAAAG----CGTTTTTCAAAAATCACTGGTTTTTA-GTGTATTCCATC 45
BSNT_04976___ 49 TTATTTATGTGGATCAAAACGTATGTGATATATAAACTCGGCTTTGATTT 98
.|.||.||||||||.|||||.||..|.||.|||.||||.|| |||
BPUM_3001 46 CTTTTCATGTGGATGAAAACATACATCATTTATCAACTAGG------TTT 89
BSNT_04976___ 99 GCAAAT-CGATAC------TCTGTTGGAGGAGCTAAT-GCTGC---TGGT 137
.||.|| ||| || ||||||..|.| ||| ||||| ||.|
BPUM_3001 90 TCACATACGA-ACGGCCAATCTGTTTCATG----AATGGCTGCTTTTGAT 134
BSNT_04976___ 138 CAACCCGCTCAGCTTTATTCTTCCTTTATTCGGGATCGGCCTGCTTCTGA 187
|||.||.||.||||||.|.||||||||.||.|||||.|..|| |||.|.|
BPUM_3001 135 CAATCCACTTAGCTTTCTACTTCCTTTGTTTGGGATAGCTCT-CTTTTTA 183
BSNT_04976___ 188 AAGGAAA-CAAGCAGCGGGCTTTTTTGCTGATTGCCAATTTGGTTCTGAC 236
||.|||| |||.||...||.||||||..|||.|||.|||||..||||.||
BPUM_3001 184 AATGAAACCAAACAAAAGGTTTTTTTATTGACTGCAAATTTTATTCTCAC 233
BSNT_04976___ 237 TGTTATCTTGATCTCTAATACGATTTTTTACGGCTTTTATATCGATTTTA 286
.|..||.|||||.||.||||||||.|||||.|||||||||||.|||||.|
BPUM_3001 234 GGCGATATTGATATCGAATACGATCTTTTATGGCTTTTATATTGATTTCA 283
BSNT_04976___ 287 TTACCATTCCGGTTTTATTTCAGGCGAGCAACATGAGCGATATGGGAAGC 336
||||||||||.||..||||.||.||||..||||||.|.||||||||.|||
BPUM_3001 284 TTACCATTCCCGTGCTATTCCAAGCGAAGAACATGGGAGATATGGGTAGC 333
BSNT_04976___ 337 AGTGTAAAAGAATTGTTCCATCCTCTGTTTATCGCCCTGTTTGTGGAT-- 384
|||.|.|..|||||.|||||.||.||.|| |.|||.|||
BPUM_3001 334 AGTATGACGGAATTATTCCACCCGCTTTT----------TGTGTTGATGC 373
BSNT_04976___ 385 ---TTGGTTTT-TC-----TGCT--GCTGTTCGCCAGAAAAAC-CAAAC- 421
|||.|||| || |||| ||||.|| |||| |||||
BPUM_3001 374 TCGTTGATTTTGTCGTACTTGCTTGGCTGCTC-------AAACGCAAACC 416
BSNT_04976___ 422 ----ACCCACAGACAAAAGCCGC-TCCCCGCACGATCAAACGGTACTATG 466
.||| |||||||..| |.|..| |||||||||...||.||||
BPUM_3001 417 ATTAGCCC-----CAAAAGCGTCATACAAG-ACGATCAAAACATATTATG 460
BSNT_04976___ 467 C----------AGCTTCC---TGCGGCAT---------GCTTTTATG--- 491
| ||.|||| ||...||| |||.|.|||
BPUM_3001 461 CGATCTGCTGTAGTTTCCTATTGTTTCATATCAGCTCAGCTATGATGGAT 510
BSNT_04976___ 492 CACACTGGCACTTGCAGAAGTACAGCAGCCGAAGCTTT-TGGCACATTCT 540
|||.|| ||| ||| ||.||...|||
BPUM_3001 511 CACCCT-----------------------CGA---TTTCTGACAAGCTCT 534
BSNT_04976___ 541 TTTGACCGGGAAATGCTAGTCAAAAGCATCGGCCTGTTTCAGTTCCATAT 590
|.|||.||.|||.|..|.||.|.||.|.||||.|||||.||.||||||.|
BPUM_3001 535 TATGATCGTGAAGTCATTGTTAGAAACCTCGGGCTGTTCCAATTCCATCT 584
BSNT_04976___ 591 TTACGA---TACAATTTCTCAGACTGTTAATATCAGCGCG---------- 627
.||||| |.| |.|.|| |.||||.||
BPUM_3001 585 GTACGACGGTGC---TGCCCA----------AACAGCACGCATTGGACAA 621
BSNT_04976___ 628 AAAGCTTTTGCCGATGAAGACAGTATA--------ACTGCCATTA-AAAA 668
||.||.|||||.||||||| ||| |||| || .|||
BPUM_3001 622 AAGGCCTTTGCAGATGAAG-----ATACGCTTTCTACTG----TAGCAAA 662
BSNT_04976___ 669 CTACACAGAGGCTGATTACAGCAAGCCTG-ATCAAAGCAAA------TTC 711
|||.|||.||||||||||||| || |.|||| |.|| ||.
BPUM_3001 663 CTATACAAAGGCTGATTACAG------TGCACCAAA-CGAAGAGTACTTT 705
BSNT_04976___ 712 GGTCTTGC-AAAGGGGCGCAA------TGTCATC-TTTGTAACACTTGAA 753
||.||||| |||| |||| |||..|| ||| ||||||||
BPUM_3001 706 GGGCTTGCTAAAG----GCAAGAACGTTGTGTTCATTT----CACTTGAA 747
BSNT_04976___ 754 TCGACCCAAAGC--TTTGTTCTGAATGAAAAAGTAAATGGAAAAGAAATT 801
|||||.| ||| |||||..||||..||||.|||||||||.||.|.||.
BPUM_3001 748 TCGACGC--AGCAATTTGTCATGAACCAAAAGGTAAATGGACAATATATC 795
BSNT_04976___ 802 ACCCCATTTATGAATGATCTCAT----TAAAAAAAGCTATTCCTTTGATC 847
||.||.|||.|.|||.| || ||||||.||.|.||..||||||.
BPUM_3001 796 ACTCCCTTTTTAAATCA----ATTGGCTAAAAAGAGTTTTTATTTTGATG 841
BSNT_04976___ 848 ATTTCTATCAGCAAACAGAACAAGGCAAAACATCAGATTCAGAATTTATC 897
|.||.||||||||.|||||.||.||.||.||.||.||||||||.|||||.
BPUM_3001 842 AATTTTATCAGCAGACAGAGCAGGGAAAGACGTCCGATTCAGAGTTTATT 891
BSNT_04976___ 898 GTCGCTAACTCACTGTATCCTTCCCTTAGC---GGCGCCGTCTTTTTCAC 944
||.|||||.||.||.|||||||| |||| |||||.|||||||||||
BPUM_3001 892 GTTGCTAATTCCCTCTATCCTTC---TAGCAGTGGCGCTGTCTTTTTCAC 938
BSNT_04976___ 945 GAAAAGC----GACCATCAATTTTATACGATGTATAAATCGCTGAAGCAG 990
||| ||..||.|||.|.|.|||.|.||.||...|.||||..||
BPUM_3001 939 ----AGCGAGTGATAATAAATATGACACGTTATACAAGCAGTTGAAAAAG 984
BSNT_04976___ 991 CACGATTATTATTCAGCCGTC---TTTCATGCTAACCATAAAACATTTTG 1037
||..|.|||..|.||||| ||||||||.||..|.|||||.|||||
BPUM_3001 985 ---GAAAACTATCAATCCGTCCAATTTCATGCGAATAACAAAACGTTTTG 1031
BSNT_04976___ 1038 GAACAGAGATGTCATGTACGATACATTTGGCATTGACCGCTTTTTTGATG 1087
|||..|.|||||.|||||.||..||.|.||.|||||.||.||.|.|||||
BPUM_3001 1032 GAATCGTGATGTGATGTATGAATCACTAGGAATTGATCGTTTCTATGATG 1081
BSNT_04976___ 1088 TTGATGATTTTCATGTCACTCCCGGGACATCGACAAGCTGGGGTTTAAAA 1137
|.|||..||.||||||||.|....|||..||.||..|||||||.|||||.
BPUM_3001 1082 TCGATTCTTATCATGTCAATGAACGGAATTCCACTGGCTGGGGCTTAAAG 1131
BSNT_04976___ 1138 GACAAAGAATTTTTAGAGCAGTCCGCCG---------AAAAGCTGAAAAG 1178
||.|..||.||.||.||.||.|||...| |||||.||||
BPUM_3001 1132 GATATCGACTTCTTTGATCAATCCATTGATTATTTAAAAAAGTTGAA--- 1178
BSNT_04976___ 1179 CCTGCCGCAGCCGTTCTACAGCAGTTTTATCACGTTAACGAATCATTTTC 1228
||||||.|..|||||.|..||.|||||.||.||.||||||||||
BPUM_3001 1179 ------GCAGCCTTATTACAGTACGTTCATCACTTTGACCAATCATTTTC 1222
BSNT_04976___ 1229 CGTTTGAGATTGATGAAAAGGATCAGCTGATAGATGAATTCGATTCAAGC 1278
|.|||||.|||||.....||||||||.|.||.|||||||..|||||...|
BPUM_3001 1223 CATTTGAAATTGACCCGCAGGATCAGTTTATTGATGAATATGATTCGTCC 1272
BSNT_04976___ 1279 AGTGATC-TGTTAAACCGCTATGTGACCACGGTTCGCTATGAGGATGAGG 1327
||| |.| |.|||||||||||||||||.||.||.||||||.|.|||||.|
BPUM_3001 1273 AGT-ACCATTTTAAACCGCTATGTGACGACCGTCCGCTATCAAGATGAAG 1321
BSNT_04976___ 1328 C-ATT--GAAGCATTTT-ATCAAAAAACTGAAGGACGAAGGCTTATACGA 1373
| ||| ||.|..|||| |||..| ||||.||.|||||.||.||.||
BPUM_3001 1322 CGATTAAGATGTTTTTTGATCGTA----TGAAAGAAGAAGGATTGTATGA 1367
BSNT_04976___ 1374 AAATTCGATGATCGTATTTATGGGAGATCATTACGGCATTTCTGAAGCCC 1423
.|||.|||||.|.||..|.|||||.||.|||||.|||||.|||||.||.|
BPUM_3001 1368 CAATACGATGTTTGTCCTCATGGGCGACCATTATGGCATCTCTGAGGCAC 1417
BSNT_04976___ 1424 ATAACGAGGCCATGGCTGAGTTTTTAAGGAAAGACGAAATCACACCGTAT 1473
||.|.|||||.|||||..||.|..|.|...||||.|||||||||||||.|
BPUM_3001 1418 ATCATGAGGCAATGGCACAGCTGCTCAATCAAGAGGAAATCACACCGTTT 1467
BSNT_04976___ 1474 GACAACGTTC-AGCTCCAGCGGGTGCCGTTTATCATACATATCCCGGGAA 1522
|| ..||.|| |.||.|||||.||.||.|||.|.||..|.||.||.||..
BPUM_3001 1468 GA-TGCGGTCAAACTGCAGCGTGTTCCATTTTTGATTTACATTCCTGGCG 1516
BSNT_04976___ 1523 TCACCGATCAA-CAGCCGGAAACCATCCCTGATGCCGGGGGACAGGTC-- 1569
||||.|||||| || ||..|.|||||..||||..|.| ||||||
BPUM_3001 1517 TCACAGATCAAGCA-CCACAGACCATTTCTGAAACAG-----CAGGTCAA 1560
BSNT_04976___ 1570 ---GACGTCAGGCCGACGCTGATGCATTTGCTCGGCGTTGAGACAAAAGG 1616
||.||||.||||||.||..|.||.||.||.||..||||.|||||
BPUM_3001 1561 ATGGATGTCAAGCCGACACTTCTTCACTTACTAGGGATTGAAACAAA--- 1607
BSNT_04976___ 1617 CGA----TATCCAATTCGGCAATGATTTGCTGTCGGGCGACCGCACCCCA 1662
|| .||.|||||||||||||||||..|.||.|..||.||.||.||.
BPUM_3001 1608 -GAATTCCATTCAATTCGGCAATGATTTATTTTCAGATGAACGGACGCCT 1656
BSNT_04976___ 1663 TTCGCCGTTCTGCGAAACGGCAGCTTTATTACGAACGATTATATATACAC 1712
|||||.||..||.|||||||.|.|||||||||..|.||.|||.|.||.||
BPUM_3001 1657 TTCGCTGTATTGAGAAACGGGAACTTTATTACAGATGAGTATCTCTATAC 1706
BSNT_04976___ 1713 AAAGAACACGTGCTATAGCCAAAAAACA--------GGTGAAGTGCTGGA 1754
|||.|||||.||||||...||||||||| .||||| ||.|||
BPUM_3001 1707 AAAAAACACCTGCTATGATCAAAAAACAAAAGAACCCGTGAA--GCAGGA 1754
BSNT_04976___ 1755 AGATCAGGATGCGTGCCTC--CCTTACAAGGAGAAAGCAAACGAAGAACT 1802
.|| ||.||| || ||.||.|..||.|||||.||..||||.||
BPUM_3001 1755 TGA--AGTATG------TCAGCCCTATATAGAAAAAGCCAATAAAGAGCT 1796
BSNT_04976___ 1803 TTCTCTCTCTGATAAAATTTTAAATGGTGA----CCTGCTCAGGTTT--- 1845
.||..|.||.||.||..|..|.||||| || .|||| ||||
BPUM_3001 1797 CTCCTTATCAGACAAGGTGATCAATGG-GAATTTACTGC----GTTTTTA 1841
BSNT_04976___ 1846 TCCG-AATGA 1854
||.| |||.|
BPUM_3001 1842 TCAGCAATAA 1851
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