Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04967 and BPUM_2992
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_04967___fhuB.1.24716.seq
# -bsequence dna-align/BPUM_2992___fhuB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04967___fhuB-BPUM_2992___fhuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04967___fhuB-BPUM_2992___fhuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04967___fhuB
# 2: BPUM_2992___fhuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity: 743/1254 (59.3%)
# Similarity: 743/1254 (59.3%)
# Gaps: 255/1254 (20.3%)
# Score: 2240.5
#
#
#=======================================
BSNT_04967___ 1 GTGATTATACCACTGCAAGTGCCGGTTGACACGATATTTTTGCAAATGCA 50
BPUM_2992___f 0 -------------------------------------------------- 0
BSNT_04967___ 51 TTTTCATTTTTGTTCAAAACACTCTATTAAATCAGCTGAAA---AAAGTG 97
||..|.|| |||.||.|.|||| ||||||..| ||.|
BPUM_2992___f 1 -------TTGGGCTC---ACAATCGAATAAA-CAGCTGCCAGCCAAGG-- 37
BSNT_04967___ 98 ATATAC--TGAAACAGCAATTGATAATCATTATCAGTAACAGAA------ 139
|| ||| |||.||||.| ||.|| |||
BPUM_2992___f 38 ----ACGATGA------AATGGATATT--------GTTAC-GAAGCCCTT 68
BSNT_04967___ 140 AGGAAGTACGGCAGTTG-AGTCAACATAAAAATATACAGACTGCATCAGA 188
.||| ||.||||.|| .||||.||||
BPUM_2992___f 69 TGGA---ACAGCAGCTGTTGTCATCATA---------------------- 93
BSNT_04967___ 189 AGAAATCCAATGGACGTCAAGGACATATGGCGCGGTCATCGTCCTTATTG 238
|||.|| |||| ||| |.|
BPUM_2992___f 94 -----------GGAAGT--------------------ATCG--CTT-TAG 109
BSNT_04967___ 239 CAGGTCTATGCCTGCTTT-GCCTTGGCGCATTTTTATCCATATCCCTCGG 287
|| ||| |.||| ||||||||..||||..|.||
BPUM_2992___f 110 CA-------------TTTGGTCTT------TTTTTATCGGTATCATTAGG 140
BSNT_04967___ 288 TGCAGCGGATATTCATTTGCGCACTGTATGGGACGCCATTTTTTATTTCA 337
.|||||..||||.|||.|.|.|||.||||||||.|||||||||.|.||..
BPUM_2992___f 141 AGCAGCAAATATCCATCTACACACGGTATGGGAAGCCATTTTTCAATTTG 190
BSNT_04967___ 338 AGCCGACAA-AGACATCTCACCAAATTATACATGATCTTCGGCTGCCGAG 386
|.|| |||| |.||.||.||.|||||.||.|..||..|..|||||||..|
BPUM_2992___f 191 ATCC-ACAACAAACGTCACATCAAATCATTCGAGAATTAAGGCTGCCTCG 239
BSNT_04967___ 387 AACGGCGGCTGCCGCGCTTGTAGGCGCATTGTTGGCAGTGTCGGGAGCAA 436
.||.||.|..||.||.||.||.||.||.||.||.||.||.||.||.||.|
BPUM_2992___f 240 TACAGCTGGGGCTGCACTCGTCGGTGCCTTTTTAGCTGTATCTGGTGCCA 289
BSNT_04967___ 437 TCATGCAGGGGATGACGAGAAA--CCCTTTGGCAGAGCCTTCGATTATGG 484
|||||||.||||||||.||||| |.||| ||....|||...|||||||
BPUM_2992___f 290 TCATGCAAGGGATGACTAGAAATGCGCTT--GCGTCTCCTGAAATTATGG 337
BSNT_04967___ 485 GTGTGACATCAGGCTCTGCGTTTGCGGTTTCGATTGCGTTTGCCTTTTTT 534
||||||||...||||||||.|||||..||.||||.||.|||||||||||.
BPUM_2992___f 338 GTGTGACAAATGGCTCTGCATTTGCAATTGCGATAGCATTTGCCTTTTTC 387
BSNT_04967___ 535 CCCGGACTTTCTGC---------AATGGGGCTTGTGCTATGGTCCTTTGC 575
||.||.|..|||.| || |.||.|||||.|||||
BPUM_2992___f 388 CCAGGTCAATCTTCTTTCACATTAA---------TTCTTTGGTCATTTGC 428
BSNT_04967___ 576 GGGAGCGGGGCTGGGGGCATCGACGGTAATGGGCATCGG--CT-TGTTTT 622
.|||||.|..|||||.|||||||..||..|.||..|||| || || |
BPUM_2992___f 429 TGGAGCCGCACTGGGTGCATCGATCGTGTTTGGTGTCGGTACTCTG---T 475
BSNT_04967___ 623 CAAGGGGCGGACTTACGCCTGTAAAGCTTGCTCTGGCGGGTACGGCAGTT 672
|.|.|||.|||||.||.||.||.|||||.||.||||||||||||||.|||
BPUM_2992___f 476 CTAAGGGAGGACTGACACCAGTGAAGCTCGCACTGGCGGGTACGGCGGTT 525
BSNT_04967___ 673 -----ACTTATTTCTTTACCGGCATTTCAACTGCCATTGCAATTCGCTTT 717
.||| ||.|.|...||.||.||.||.|||||.|||||.|||
BPUM_2992___f 526 GGAGCCCTT-----TTAAGCTCGATCTCTACAGCAATTGCCATTCGGTTT 570
BSNT_04967___ 718 GATGTCGCTCAGGATATCAGCTTTTGGTACGCAGGCGGGGTAGCGGGTGT 767
||.|||||||||||.||.||||||||||||||||||||.||.||.||..|
BPUM_2992___f 571 GACGTCGCTCAGGACATGAGCTTTTGGTACGCAGGCGGCGTGGCAGGCTT 620
BSNT_04967___ 768 GAAATGG---------CCGGGGG----TCCAGCTTTTGTTT----ATTGC 800
.||.||| |.||..| ||||| | |||||
BPUM_2992___f 621 AAATTGGAGCAACATTCAGGTCGTTATTCCAG--------TCGCCATTGC 662
BSNT_04967___ 801 AGGGGCTGTCGGTTTAACGCTTGCGTTTTTCATCGCCCGGTCTGTGACAG 850
|||...||| |.|||||.|..||.|.||.||.||..|.||.|
BPUM_2992___f 663 AGGACTTGT---------GGTTGCGATGATCCTTGCACGCTCGATCACTG 703
BSNT_04967___ 851 TGTTGAGTCTCGGTGACGATCTGGCAAAAGGGCTTGGACAATATACATCA 900
|..||||..|.|||||.||..||||.|||||.||.||.||.|||||...|
BPUM_2992___f 704 TACTGAGCTTAGGTGATGAATTGGCTAAAGGACTCGGGCAGTATACGAAA 753
BSNT_04967___ 901 GCAGTGAAACTGGTGGGCATGCTTATT-GTAGTAATTC---TGACCGGAG 946
.|.||.|||.||.|.|||| |||| ||.||.|||| |.|||||.|
BPUM_2992___f 754 ACGGTCAAAGTGCTAGGCA----TATTGGTCGTGATTCTTTTAACCGGTG 799
BSNT_04967___ 947 CTGCGGTTTCCATTGCCGGCACCATTGCATTTATCGGGCTGATTATTCCG 996
||||.||.||..|.||.||..|.||||..|||||||||||..|.||.||.
BPUM_2992___f 800 CTGCTGTGTCGGTGGCAGGTTCAATTGGCTTTATCGGGCTTGTCATACCC 849
BSNT_04967___ 997 CATATTACCCGTTTTTTGGTCGGTGTGGATTATCGGTGGATCATTCCTTG 1046
|||.|.||.||.||.||||||||.|||||.||.||||||||.||.|||||
BPUM_2992___f 850 CATGTCACTCGATTCTTGGTCGGAGTGGACTACCGGTGGATTATCCCTTG 899
BSNT_04967___ 1047 CTCGGCGGTGCTCGGTGCTGTTTTGCTTGTTTTTGCTGACATAGCGGCCA 1096
|||.||..|..|.||.||..|||||.|..|||.|||.|||||.||.||.|
BPUM_2992___f 900 CTCAGCTATTTTAGGGGCCATTTTGTTAATTTATGCAGACATTGCTGCAA 949
BSNT_04967___ 1097 GACTCGTAAATGCGCCCTTTGAGACGCCTGTCGGCGCGCTGACTTCTCTG 1146
||||.||.||||||||.|||||.|||||.||.||.||..|.|||.|..|.
BPUM_2992___f 950 GACTGGTCAATGCGCCATTTGAAACGCCAGTTGGTGCCATTACTGCGATT 999
BSNT_04967___ 1147 ATCGGCGTTCCCTTTTTCTTTTATTTGGCACGTCGTGAAAGGAGAGGGCT 1196
||.||||||||.||.|||||.|||||.||..|.|||||||||||.||..|
BPUM_2992___f 1000 ATAGGCGTTCCTTTCTTCTTATATTTAGCTAGACGTGAAAGGAGCGGAAT 1049
BSNT_04967___ 1197 GTAA 1200
.|||
BPUM_2992___f 1050 TTAA 1053
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