Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04947 and BPUM_2988
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_04947___yvrG.1.24716.seq
# -bsequence dna-align/BPUM_2988.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04947___yvrG-BPUM_2988.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04947___yvrG-BPUM_2988.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04947___yvrG
# 2: BPUM_2988
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1989
# Identity: 1131/1989 (56.9%)
# Similarity: 1131/1989 (56.9%)
# Gaps: 480/1989 (24.1%)
# Score: 2799.0
#
#
#=======================================
BSNT_04947___ 1 ATGAGGTTAAGATGGAAGTTTTTGTTTCACTTTTTCGGCCAGATGCTGAT 50
||||..|||.||...||..|.||.|||||||||.||||.||.|||.|.||
BPUM_2988 1 ATGAATTTACGAGCAAAACTCTTCTTTCACTTTGTCGGACAAATGTTTAT 50
BSNT_04947___ 51 TGTGATCCTGCTGCTTACGGTTATGCTTGTTGCGTCG-------TTTTTC 93
|||||| |||.|.|| |||| |.||| .||.||
BPUM_2988 51 TGTGAT--TGCCGTTT----TTAT--------CATCGGAAATACGTTCTC 86
BSNT_04947___ 94 T----ATTTAGACGCCCGTTTTA----------GCGATGCGGAATCCAAT 129
| |||||.| |||| .||| |||
BPUM_2988 87 TGATAATTTATA-------TTTAAAAAAATACTACGA----GAA------ 119
BSNT_04947___ 130 TCAGGGCTG-----------ACGAAAGC--AACGACCGACACACT--TGA 164
||.||||| ||.||||| |..|| ||.||||| |||
BPUM_2988 120 -CATGGCTGAAACTGGTTTAACAAAAGCTGATGGA--GATACACTCATGA 166
BSNT_04947___ 165 GGCATATCTCG----ATGTAAACGAAGACGG-GACATGGGAAGTGGATAA 209
| ||.| ||.|.|||||.||.|| ||.|| |||.|..|||.|
BPUM_2988 167 G------CTGGCTTTATTTTAACGAGGATGGAGAAAT-GGAGGCCGATGA 209
BSNT_04947___ 210 TTTCCTGAAGAAATCTGTTGATAAA--CAGCACGGCTGGATGCAAATCAT 257
|...||.|||.||.|.| |||.||| .|| ||||||||.|||||.|.||
BPUM_2988 210 TCAGCTCAAGCAAGCAG-TGAGAAAACGAG-ACGGCTGGCTGCAAGTGAT 257
BSNT_04947___ 258 TGATTCGGAAGGAAACA------CTGAT---TAT-----TCCTACG-GCG 292
|||||| ||..||||| || || ||| .||||.| .|.
BPUM_2988 258 TGATTC--AAAAAAACATAACGTCT-ATAGCTATCACCGACCTAAGTCCA 304
BSNT_04947___ 293 TGCCAAAAGACGTGCCGGGCACCTATACCAA------GAAAGAGCTTTTG 336
|.||| ||.| ||||| ||| |||| ||
BPUM_2988 305 TTCCA----ACTT--------CCTAT--CAAAAGGATGAAA-------TG 333
BSNT_04947___ 337 -TC----TATTTATAAAACCAAAAAGCTTCATA-ACTATAAACTGAATTA 380
|| |.|||..||||..|.|| ||||.| |.|||||..||.|.|.
BPUM_2988 334 ATCCAGATCTTTGAAAAAAGACAA---TTCAAAGATTATAAGATGTACTT 380
BSNT_04947___ 381 TTGGGCCATCAATATTGA--AGATAAGTCGTATCTTCTATTGTCCGGCTG 428
.|||.|.||..|.||||| |.|.|||...|||| .|.||||..||.|.
BPUM_2988 381 CTGGCCAATTGAGATTGATCAAAAAAGCTTTATC--GTGTTGTATGGGTT 428
BSNT_04947___ 429 GAAATCAAAAAGTGAACAGCTCCTGACTTCCGTTGAAAAGCGTGAAC--- 475
.|||.||||.||...|.||.||...|.|| ..||| |||| .||||
BPUM_2988 429 TAAAACAAACAGCACAAAGGTCGCCAATT-ATTTG--AAGC-AGAACGAG 474
BSNT_04947___ 476 AAAAGATAGACT-CACTAGCGCACTATAAGTCTAGT----ACCATCGACT 520
||||..|.|.|| ||||..|.||.|||..| || ||.|..||.|
BPUM_2988 475 AAAAATTTGGCTGCACTCTCTCAATATTCG----GTTGAAACGAAAGAAT 520
BSNT_04947___ 521 ATATTAAACGGAAAAAA------GGCGCCATTTACCTGTTAGACAGCAAT 564
|.||.||..|||..|| ||.|| |.||||| ||||
BPUM_2988 521 -TCTTGAAGAGAATGAATGGGTCGGTGC-----ATCTGTT------CAAT 558
BSNT_04947___ 565 -------GGAAAGATTCTCGACAGCAT------CAATAGCACAAAAAGCG 601
|||||.||| |..|..|||| |||||.|
BPUM_2988 559 GATGAAGGGAAATATT-TAAAAGGCATTCGAGCCAATACC---------- 597
BSNT_04947___ 602 AAA---GAAAAACGATGAACCAGCTG--GAGCTGCTTAAATA-CAGCTCT 645
|| ||||.|.||||.|.|||.|| ||.||.|||||.|| || .||.
BPUM_2988 598 -AATTTGAAACATGATGTAACAGATGTTGAACTACTTAAGTATCA-ATCA 645
BSNT_04947___ 646 AAGCCTTGGAACTATAAGCGGGAAATTTCCGTTA----AGATCCTCAATA 691
|||||||||.|.|.||...|.||..|.|| ||| ||| .|.||||
BPUM_2988 646 AAGCCTTGGGAGTTTAGAAGTGATCTATC--TTATATTAGA--GTGAATA 691
BSNT_04947___ 692 AAGACAGATGGATGGTCGCTACGGTGCCAAA------------CCCAGTC 729
||.||...|..|||.||..|.|.||.||||| |||||
BPUM_2988 692 AAAACCTGTATATGATCATTTCTGTACCAAATAAAGTATACAGCCCAG-- 739
BSNT_04947___ 730 TATG---TAACCGATCAGGA--------GTTTAA--CAA------ATCAT 760
||| ||..||||.|.|| .||||| ||| |.|||
BPUM_2988 740 -ATGGCTTATACGATAAAGAAACAGACGCTTTAAATCAATATACGACCAT 788
BSNT_04947___ 761 TCCTGAAGGTTGTATTAAAAGCGATGTTTCTCGTGATGGCCGTTTTGTTC 810
| ||||..|| |.| |||.|.||| |.|
BPUM_2988 789 T-------------TTAATTGC-AGG--TCTTGCGAT----------TAC 812
BSNT_04947___ 811 ATGTA-TATCATTTGGATGACCGTTTGGTATATGTTCCGATTCGGGCTGC 859
|..|| ||||.| .|||||..|.||||||..||..||.|..||.||||
BPUM_2988 813 AATTATTATCGT---CATGACATTATGGTATTCGTATCGCTATGGACTGC 859
BSNT_04947___ 860 CGATTTTTCACACGATTAGATGGCTGGT----CAATCTGTCAAAAGGGAA 905
||||.|.|||||..|||.|.||||||.| ..|||| |.||...||
BPUM_2988 860 CGATCTATCACATTATTCGCTGGCTGATTTTCTTATCT---AGAAATAAA 906
BSNT_04947___ 906 GCTTG-AGGAACC------CAGAAACCGGGA--CGGCCGTCCTGTCAGCA 946
||| ||||||| .||||| .||| | ||..|.||.|
BPUM_2988 907 --TTGCAGGAACCAACGAATAGAAA--AGGAATC------CCAATTAGTA 946
BSNT_04947___ 947 AAAATAAAAAGGGAAAAATCAAACAGCCGTACCGCTTCTTCGGTGA-GAT 995
||||||||||.||....||.||.|.|...|||||.||.|| ||| |||
BPUM_2988 947 AAAATAAAAAAGGGCGTATTAAGCGGGAATACCGATTATT---TGAGGAT 993
BSNT_04947___ 996 AT--TTGAATCAATGGATCAGCTGAC--------TGAAACGCTGAGAAGG 1035
|| |..||.|||||||||||||.|| |.||| |||||.|
BPUM_2988 994 ATCCTCAAAACAATGGATCAGCTCACGCTTACATTAAAA----GAGAATG 1039
BSNT_04947___ 1036 GATAAAAG-AAACAGAGAAAAAATCCAGGCGACAAGGGAAGAATGGATTG 1084
||| ||||.||..||||||.||..|.|||||||||||||||||||
BPUM_2988 1040 -----AAGAAAACCGAAGAAAAATTCAAACCACAAGGGAAGAATGGATTG 1084
BSNT_04947___ 1085 CCGGTTTGTCACATGACTTAAAAACACCGCTCAGCAGCATTTACGGCTAC 1134
|.||.|||||.|||||.||.||||||||.||.||.|.|||.|||||||||
BPUM_2988 1085 CAGGATTGTCTCATGATTTGAAAACACCCCTTAGTACCATCTACGGCTAC 1134
BSNT_04947___ 1135 AGCATGATGCTCGAGTCGAAGCAGTATGACTGGTCGCCGGAAGAAGTGAA 1184
.|..|.|||||.||.||..|.||.|||.|.|||||...|||||||||.|.
BPUM_2988 1135 GGGCTCATGCTTGAATCTGATCAATATCAATGGTCCAAGGAAGAAGTCAT 1184
BSNT_04947___ 1185 AGAAATGGGGCAGGTTGTCAGAGAAAAATCTGAATACATGTCTAAGCTGA 1234
.||||||||.|||||..|..|.||.|||||.|||||||||||.|...|||
BPUM_2988 1185 GGAAATGGGACAGGTGATTCGTGAGAAATCAGAATACATGTCGACCTTGA 1234
BSNT_04947___ 1235 TTGAAGACTTAAATTTAACGTATCGGCTGAAAAATGATGCTCTT-CCTAT 1283
|||||||.|||||..|.||||||||..|||||||||..|| ||| |||||
BPUM_2988 1235 TTGAAGATTTAAACCTCACGTATCGATTGAAAAATGGGGC-CTTACCTAT 1283
BSNT_04947___ 1284 --------------------TGAGAGAAATCTCACTAGCCT-TATCCCGT 1312
||.|.|||.|.| |||||| ||
BPUM_2988 1284 CAATCGAAAGCCGGTCGAGCTGGGTGAATTTT---TAGCCTCTA------ 1324
BSNT_04947___ 1313 TTTTTAAAAATGTCATTGAGGA--TTTTAAGAAAAATC-CGTTTTCTGAA 1359
|.||.||.|| |||.||| ||.| |.||||||| |
BPUM_2988 1325 ------------TTATGGACGAGTTTTCAAG---AAGCTCTTTTTCTG-A 1358
BSNT_04947___ 1360 GGCTATGATAT-CTCGTTTGTATCCAAAGAAGAGCATATTGAA------- 1401
||.|.|...|| |||.||| |||||.||.|.| ||
BPUM_2988 1359 GGATTTTTCATCCTCTTTT---------GAAGACCAAACT-AACGGTGTC 1398
BSNT_04947___ 1402 ---TTTGCCCTTGATGAAGCGTGGTTCAGGCGCAT-ATTAGAAAACCTCC 1447
||||...|.||..||||.||||||||.||..| ||| ||.|||||.|
BPUM_2988 1399 ATCTTTGAGATAGACAAAGCTTGGTTCAGACGAGTGATT-GAGAACCTGC 1447
BSNT_04947___ 1448 TTGGGAATGCCGTGAAGCACAACGGCAAAGGAACAGAGATTCAAGTCAT- 1496
|||.||||||.||.|||||.|||...|||||.||..|.||| |.|..|
BPUM_2988 1448 TTGCGAATGCAGTCAAGCATAACCAAAAAGGCACGCATATT--ACTGCTG 1495
BSNT_04947___ 1497 -----TCTGGAGCAAACAAA-----AAATCATATATC---TTTAAAGGTG 1533
|||| ||||||| |||| || |..||| ||
BPUM_2988 1496 TTTTGTCTG----AAACAAATGAAGAAAT------TCGGATCGAAA--TG 1533
BSNT_04947___ 1534 AAGGACAATGGGAAAGGAATGGATGAAGAAA----CGATCACCCATTTGT 1579
||.|||||.||....||.||||...|||||| ||||||| ||.|
BPUM_2988 1534 AAAGACAACGGATGCGGTATGGCACAAGAAACGGTCGATCAC----TTAT 1579
BSNT_04947___ 1580 TTAACCGTTACTACAGAGGGACGAACACAAAAGATTCAACTGCCGGAACG 1629
|||||||.|||||.||||||||.||.|||||.||..||||....|||||.
BPUM_2988 1580 TTAACCGCTACTATAGAGGGACAAATACAAATGACCCAACGAATGGAACA 1629
BSNT_04947___ 1630 GGTCTCGGGCTCGCGATTGCCAAGGAGCTTGTCCATCTGCATAACGGAAC 1679
||.||.||.||.||.||.||.||.|||||||||...||||||.|||| |
BPUM_2988 1630 GGACTTGGTCTGGCAATAGCAAAAGAGCTTGTCTTACTGCATGACGG--C 1677
BSNT_04947___ 1680 GATA--CATGTGAACAGCAGAATGAACAT-----TGGAACGGTCATT--- 1719
|||| ||.|||.|.|| |||||.| ||||||....|||
BPUM_2988 1678 GATATTCAAGTGGAAAG-----TGAACCTGGTGCTGGAACAACTATTGCG 1722
BSNT_04947___ 1720 ACCATCCTTTTTAAAAAACAATAA--------------- 1743
|..||||| ||||.|||.|
BPUM_2988 1723 ATTATCCT------AAAAAAATCACCTTCTGTAAAATAG 1755
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