Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02098 and BPUM_2985
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02098___uxaB.1.24716.seq
# -bsequence dna-align/BPUM_2985___uxaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02098___uxaB-BPUM_2985___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-BPUM_2985___uxaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: BPUM_2985___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1671
# Identity: 913/1671 (54.6%)
# Similarity: 913/1671 (54.6%)
# Gaps: 441/1671 (26.4%)
# Score: 2147.0
#
#
#=======================================
BSNT_02098___ 1 ATGCAGAAAC-TGAATAAAAATGTGTACGATCACTATACTCGG------- 42
..||||| |..||.|||| |.|| |||||.|.|
BPUM_2985___u 1 ---TTGAAACGTTTATCAAAA--------AGCA-TATACCCAGTGTCTGA 38
BSNT_02098___ 43 -TATCCAGAAAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGAT 91
|||||.||||..|||.|.||..||||.|||||.||.|||.|.||.||.|
BPUM_2985___u 39 ATATCCGGAAACGATTTTGCAGATCGGTGAAGGGAATTTTATGCGAGGCT 88
BSNT_02098___ 92 TTGTTGATTGGCAGATTGATCAATTGAATCAAC-ACACTGATTTTAATGG 140
||.|..|||||||.|||.|..|..|||| |.|| .|||.||||||||.||
BPUM_2985___u 89 TTATGAATTGGCACATTCAAAAGCTGAA-CGACTGCACAGATTTTAAAGG 137
BSNT_02098___ 141 GAGCGTGGCAGTTG----TCCAGCCAAGAGGCTCAGAAAAAATCAAACGA 186
.|| |||.|||| || |||.||.| |||.||
BPUM_2985___u 138 AAG---GGCTGTTGTTGTTC-----------CTCCGAGA-----AAAGGA 168
BSNT_02098___ 187 ------------TTAAATCAGCAAGATGGATTATATACGCTTTTTTTACA 224
||||||.|.||||||||.|||||.||..|.|.|.|.||
BPUM_2985___u 169 TCTGTTGCAGCTTTAAATGAACAAGATGGCTTATACACATTATGTATTCA 218
BSNT_02098___ 225 AGG-AATGAAAGACGGAGAAGCCGTAAACGAGCATATGATTA-TCAACTC 272
.|| .|| .|.|||||..|||...|.||.||||..|||||.| |||| ||
BPUM_2985___u 219 GGGCTAT-CATGACGGTCAAGAAATGAATGAGCGCATGATCATTCAA-TC 266
BSNT_02098___ 273 AATCAGCCGGGGAATTGACCTGT---TTTCT-GATTATGAAG----CATA 314
.||||||.|.||||| |.|| |.|.| ||||||||.| ..||
BPUM_2985___u 267 GATCAGCAGAGGAAT----CAGTACGTATATGGATTATGATGTTTTTTTA 312
BSNT_02098___ 315 CAAAGAATTGGCATCAAGC-GAAA------GGCTTCGGTTTATTATCTCC 357
||| ..||| |||| ..||.||.|||.||.||||.
BPUM_2985___u 313 CAA-----------GTAGCTGAAAACCCCGATCTCCGCTTTGTTTTCTCA 351
BSNT_02098___ 358 AACACCACTGAGGCTGGGATTGTATGTGATGAAA--AAGATCGTTTAGAG 405
||.||.||.|||||.||..| |||||...|||| |.|||||.||.|||
BPUM_2985___u 352 AATACGACAGAGGCAGGACT--TATGTTCAGAAAGGAGGATCGCTTGGAG 399
BSNT_02098___ 406 GATAGGCCGCAAAAAACATTCCCTGGGAAA-TTAACTGCATTTCTCTACT 454
|||.|.||.|||...|..||.|| |||||| .|.||.||.||.||.||..
BPUM_2985___u 400 GATCGACCACAAGCGAGTTTTCC-GGGAAAGCTGACAGCGTTCCTATATC 448
BSNT_02098___ 455 TCCGCTTTCAGGCTTTTAAAGGAGATCAGACAAAAGGGTGTG-TCCTAAT 503
.|||.|||.|..|.|||...||||||.| ||||||.||..|| ||.|..|
BPUM_2985___u 449 ACCGGTTTAAATCATTTGCTGGAGATGA-ACAAAAAGGGATGATCATCCT 497
BSNT_02098___ 504 CCCATGTGAACTGATTGAGAACAACGGCGAAAAGC----TGAAGGAAACG 549
.||.|||||||||.||||..|.|||||.|| | ||||||||
BPUM_2985___u 498 TCCTTGTGAACTGGTTGAACATAACGGTGA----CCGTTTGAAGGAA--- 540
BSNT_02098___ 550 GTTCTTCATTAT------------GCAGGTCTGTGGAAGCTGGAGGAAGG 587
||| |||..|..||||.||||...|...|.
BPUM_2985___u 541 ---------TATGTGGTAGACATGGCAATTGAGTGGGAGCTTCCGCTTGC 581
BSNT_02098___ 588 ATTTA-CACAGTGGATTCATGAGGCCAATACATTTTGTAATA-GTTTAGT 635
.|||| |||| |||||..|.||.||||||||.|||||.|||| |.|| ||
BPUM_2985___u 582 GTTTATCACA-TGGATCAAGGAAGCCAATACGTTTTGCAATACGCTT-GT 629
BSNT_02098___ 636 AGACCGGATTGTT-CCGGGTTTTC-----------CCG-------TCGAC 666
.||.||||||||| |||||||||| |.| ||.|.
BPUM_2985___u 630 GGATCGGATTGTTCCCGGGTTTTCTAAGGAAGTAGCTGAAATGGTTCAAA 679
BSNT_02098___ 667 AGCATTGATGAGATCACGGCGGATCTTGGCTATCAGGATGATTTGATAGT 716
|| ||.||| |||| .|||| ||.||.|||.|.||
BPUM_2985___u 680 AG----GAAGAG--------GGAT-----ATATC--GACGAGTTGCTTGT 710
BSNT_02098___ 717 TGTGGGAGAGCAATAT----TATTTATGGGTTATCGAGGGGCCTGATTGG 762
...||.|||..|.||| |.||| |||||.||.|..||||.|
BPUM_2985___u 711 CACGGCAGAATACTATCACCTCTTT----GTTATTGAAGCACCTGTT--- 753
BSNT_02098___ 763 ATTGG----AAAAGAACTTCCCTTTGCGGC----TGCAGGGCTCCATACA 804
||.| ||||||.||||||||| | .||||| |..|
BPUM_2985___u 754 -TTCGTACAAAAAGAGCTTCCCTTT----CAAAAAGCAGG------TTTA 792
BSNT_02098___ 805 AA----------------GATCGTCAGCGACCTCACCCCATACCGGACTA 838
|| |||..| ||| |||.|.|.|||| |
BPUM_2985___u 793 AATGTTCTTTTTGTAGAGGATATT--GCG-CCTTATCGCATA-------A 832
BSNT_02098___ 839 AAAAAGTAAGGATTTTAAATGGCGCTCATACAGCAATGACGCCAGTGGCT 888
..||.|||.||||||||||.||.|||||||||||.|||..||||.|.|||
BPUM_2985___u 833 GCAAGGTACGGATTTTAAACGGTGCTCATACAGCGATGGTGCCAATCGCT 882
BSNT_02098___ 889 TTATTATACGGCTTAAAAACTGTTAGGGATGCTGTCGAGCATCCGGAAGT 938
|..|.||.|||..||.|||||||.|..||.|||||.|...||...||.||
BPUM_2985___u 883 TACTCATGCGGGATAGAAACTGTAAACGAAGCTGTGGGTGATGAAGATGT 932
BSNT_02098___ 939 TGGGCGATTTATAAGAGAGCTGATTGACGACGAAATTCTTCCTGTTTTAA 988
|||||..||.||..|...|.||.|.||.||.|||.|.||.||
BPUM_2985___u 933 TGGGCCGTTCATCCGGCGGATGCTGGAGGAGGAAGTACTACC-------- 974
BSNT_02098___ 989 AAATGGAAGGTCTT------TCTCAGTATGCTGACGATGTGCT------- 1025
|||.||| |||| || ||||.|||
BPUM_2985___u 975 -------AGGGCTTGAGCTCTCTC--------GA-GATGAGCTTCTTCTT 1008
BSNT_02098___ 1026 -----------------GAACCGTTTTAAAAACCCGTATATTAAGCATTA 1058
|.|.||.|||...||.||.|.|.|..|||||.|
BPUM_2985___u 1009 TATACACAATCGGTCTGGGATCGCTTTTGCAATCCATTTGTGCAGCATCA 1058
BSNT_02098___ 1059 CCTGGAAAGCATTGC-----ATTGAGCT-----CCGTTTCCAAATTCAAA 1098
||||| ||||.||| ..||.||.||.|||..|
BPUM_2985___u 1059 ----------ATTGCTGGATATTGCGCTTAATGGTGTATCGAAGTTCCGA 1098
BSNT_02098___ 1099 ACGAGAAACCTGCCGAC---TCTTAAGGAATATGCTGAACAAAAGGGACA 1145
||..|.|..||.|||.| .||| ||.||||.|||.||||||..|||
BPUM_2985___u 1099 ACTCGTATTCTTCCGTCATTGCTT---GATTATGTTGAGCAAAAGAAACA 1145
BSNT_02098___ 1146 GCTTCC--TG-AACGCTTGGTGTTTTCTTTCAGC-GCTCTTCTGTATTTT 1191
|||||| || ||| |.||||||||..||||| || ||..|.||||||
BPUM_2985___u 1146 GCTTCCAATGAAAC---TCGTGTTTTCACTCAGCAGC-CTCATTTATTTT 1191
BSNT_02098___ 1192 TATCATAATAATGAG-ACATTGC-----------AGGATGATCCGGCAGT 1229
|| || ||| ||| ||| ||||||||..|.|.||
BPUM_2985___u 1192 TA-CA-------GAGCACA-TGCAGAAAAGATAAAGGATGATGAGACGGT 1232
BSNT_02098___ 1230 GCTTCAATTTTTCAAAGAGG--TTTGGTGTCAGGAGGATGACGACAT--- 1274
.||...|||..|.||.||.| |||| |.||.| |||..|.||
BPUM_2985___u 1233 ACTGGCATTCATGAAGGATGTCTTTG-----AAGAAG-TGAACAAATCTA 1276
BSNT_02098___ 1275 -----GCTTCGGATTGCATC-AAGAGTGTTAGGCGAACAGCGGCTGTG-- 1316
|| |||.|||.| ||| ||| |.|.|| ||||
BPUM_2985___u 1277 ATGAAGC----GATCGCAGCTAAG---GTT---CTATCA-----TGTGAG 1311
BSNT_02098___ 1317 -------GGGGGCAGATCTCAAT------GAGATACCGAAGCTGACTGAT 1353
||||| ||| ||| ||.|||| .||||
BPUM_2985___u 1312 TCATTATGGGGG-AGA----AATTTAACGGATATAC---------ATGAT 1347
BSNT_02098___ 1354 AGAGT---CGCTGT-----------TTACTTGAATCTTATTCATGAGCTG 1389
...|| |||||| |||||| |.||.||.|||...
BPUM_2985___u 1348 TTGGTTCACGCTGTAGCTGATCAGCTTACTT-----TCATACAGGAGGAA 1392
BSNT_02098___ 1390 GGCATGCAGCG-GGCTCTT-GAACAATACTGCATACA------------- 1424
||.||| ||.| ||||.|| .||.|||.||||| |||
BPUM_2985___u 1393 GGGATG-AGAGCGGCTGTTCAAAGAATGCTGCA-ACATCAATATGAAAGT 1440
BSNT_02098___ 1425 -AGAGGGAG-AGGTACGTTGA 1443
||.||||| |||.| |||
BPUM_2985___u 1441 CAGGGGGAGAAGGCA---TGA 1458
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