Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02098 and BPUM_2985

See Amino acid alignment / Visit BSNT_02098 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_02098___uxaB.1.24716.seq
#    -bsequence dna-align/BPUM_2985___uxaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02098___uxaB-BPUM_2985___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-BPUM_2985___uxaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: BPUM_2985___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1671
# Identity:     913/1671 (54.6%)
# Similarity:   913/1671 (54.6%)
# Gaps:         441/1671 (26.4%)
# Score: 2147.0
# 
#
#=======================================

BSNT_02098___      1 ATGCAGAAAC-TGAATAAAAATGTGTACGATCACTATACTCGG-------     42
                        ..||||| |..||.||||        |.|| |||||.|.|       
BPUM_2985___u      1 ---TTGAAACGTTTATCAAAA--------AGCA-TATACCCAGTGTCTGA     38

BSNT_02098___     43 -TATCCAGAAAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGAT     91
                      |||||.||||..|||.|.||..||||.|||||.||.|||.|.||.||.|
BPUM_2985___u     39 ATATCCGGAAACGATTTTGCAGATCGGTGAAGGGAATTTTATGCGAGGCT     88

BSNT_02098___     92 TTGTTGATTGGCAGATTGATCAATTGAATCAAC-ACACTGATTTTAATGG    140
                     ||.|..|||||||.|||.|..|..|||| |.|| .|||.||||||||.||
BPUM_2985___u     89 TTATGAATTGGCACATTCAAAAGCTGAA-CGACTGCACAGATTTTAAAGG    137

BSNT_02098___    141 GAGCGTGGCAGTTG----TCCAGCCAAGAGGCTCAGAAAAAATCAAACGA    186
                     .||   |||.||||    ||           |||.||.|     |||.||
BPUM_2985___u    138 AAG---GGCTGTTGTTGTTC-----------CTCCGAGA-----AAAGGA    168

BSNT_02098___    187 ------------TTAAATCAGCAAGATGGATTATATACGCTTTTTTTACA    224
                                 ||||||.|.||||||||.|||||.||..|.|.|.|.||
BPUM_2985___u    169 TCTGTTGCAGCTTTAAATGAACAAGATGGCTTATACACATTATGTATTCA    218

BSNT_02098___    225 AGG-AATGAAAGACGGAGAAGCCGTAAACGAGCATATGATTA-TCAACTC    272
                     .|| .|| .|.|||||..|||...|.||.||||..|||||.| |||| ||
BPUM_2985___u    219 GGGCTAT-CATGACGGTCAAGAAATGAATGAGCGCATGATCATTCAA-TC    266

BSNT_02098___    273 AATCAGCCGGGGAATTGACCTGT---TTTCT-GATTATGAAG----CATA    314
                     .||||||.|.|||||    |.||   |.|.| ||||||||.|    ..||
BPUM_2985___u    267 GATCAGCAGAGGAAT----CAGTACGTATATGGATTATGATGTTTTTTTA    312

BSNT_02098___    315 CAAAGAATTGGCATCAAGC-GAAA------GGCTTCGGTTTATTATCTCC    357
                     |||           ..||| ||||      ..||.||.|||.||.||||.
BPUM_2985___u    313 CAA-----------GTAGCTGAAAACCCCGATCTCCGCTTTGTTTTCTCA    351

BSNT_02098___    358 AACACCACTGAGGCTGGGATTGTATGTGATGAAA--AAGATCGTTTAGAG    405
                     ||.||.||.|||||.||..|  |||||...||||  |.|||||.||.|||
BPUM_2985___u    352 AATACGACAGAGGCAGGACT--TATGTTCAGAAAGGAGGATCGCTTGGAG    399

BSNT_02098___    406 GATAGGCCGCAAAAAACATTCCCTGGGAAA-TTAACTGCATTTCTCTACT    454
                     |||.|.||.|||...|..||.|| |||||| .|.||.||.||.||.||..
BPUM_2985___u    400 GATCGACCACAAGCGAGTTTTCC-GGGAAAGCTGACAGCGTTCCTATATC    448

BSNT_02098___    455 TCCGCTTTCAGGCTTTTAAAGGAGATCAGACAAAAGGGTGTG-TCCTAAT    503
                     .|||.|||.|..|.|||...||||||.| ||||||.||..|| ||.|..|
BPUM_2985___u    449 ACCGGTTTAAATCATTTGCTGGAGATGA-ACAAAAAGGGATGATCATCCT    497

BSNT_02098___    504 CCCATGTGAACTGATTGAGAACAACGGCGAAAAGC----TGAAGGAAACG    549
                     .||.|||||||||.||||..|.|||||.||    |    ||||||||   
BPUM_2985___u    498 TCCTTGTGAACTGGTTGAACATAACGGTGA----CCGTTTGAAGGAA---    540

BSNT_02098___    550 GTTCTTCATTAT------------GCAGGTCTGTGGAAGCTGGAGGAAGG    587
                              |||            |||..|..||||.||||...|...|.
BPUM_2985___u    541 ---------TATGTGGTAGACATGGCAATTGAGTGGGAGCTTCCGCTTGC    581

BSNT_02098___    588 ATTTA-CACAGTGGATTCATGAGGCCAATACATTTTGTAATA-GTTTAGT    635
                     .|||| |||| |||||..|.||.||||||||.|||||.|||| |.|| ||
BPUM_2985___u    582 GTTTATCACA-TGGATCAAGGAAGCCAATACGTTTTGCAATACGCTT-GT    629

BSNT_02098___    636 AGACCGGATTGTT-CCGGGTTTTC-----------CCG-------TCGAC    666
                     .||.||||||||| ||||||||||           |.|       ||.|.
BPUM_2985___u    630 GGATCGGATTGTTCCCGGGTTTTCTAAGGAAGTAGCTGAAATGGTTCAAA    679

BSNT_02098___    667 AGCATTGATGAGATCACGGCGGATCTTGGCTATCAGGATGATTTGATAGT    716
                     ||    ||.|||        ||||     .||||  ||.||.|||.|.||
BPUM_2985___u    680 AG----GAAGAG--------GGAT-----ATATC--GACGAGTTGCTTGT    710

BSNT_02098___    717 TGTGGGAGAGCAATAT----TATTTATGGGTTATCGAGGGGCCTGATTGG    762
                     ...||.|||..|.|||    |.|||    |||||.||.|..||||.|   
BPUM_2985___u    711 CACGGCAGAATACTATCACCTCTTT----GTTATTGAAGCACCTGTT---    753

BSNT_02098___    763 ATTGG----AAAAGAACTTCCCTTTGCGGC----TGCAGGGCTCCATACA    804
                      ||.|    ||||||.|||||||||    |    .|||||      |..|
BPUM_2985___u    754 -TTCGTACAAAAAGAGCTTCCCTTT----CAAAAAGCAGG------TTTA    792

BSNT_02098___    805 AA----------------GATCGTCAGCGACCTCACCCCATACCGGACTA    838
                     ||                |||..|  ||| |||.|.|.||||       |
BPUM_2985___u    793 AATGTTCTTTTTGTAGAGGATATT--GCG-CCTTATCGCATA-------A    832

BSNT_02098___    839 AAAAAGTAAGGATTTTAAATGGCGCTCATACAGCAATGACGCCAGTGGCT    888
                     ..||.|||.||||||||||.||.|||||||||||.|||..||||.|.|||
BPUM_2985___u    833 GCAAGGTACGGATTTTAAACGGTGCTCATACAGCGATGGTGCCAATCGCT    882

BSNT_02098___    889 TTATTATACGGCTTAAAAACTGTTAGGGATGCTGTCGAGCATCCGGAAGT    938
                     |..|.||.|||..||.|||||||.|..||.|||||.|...||...||.||
BPUM_2985___u    883 TACTCATGCGGGATAGAAACTGTAAACGAAGCTGTGGGTGATGAAGATGT    932

BSNT_02098___    939 TGGGCGATTTATAAGAGAGCTGATTGACGACGAAATTCTTCCTGTTTTAA    988
                     |||||..||.||..|...|.||.|.||.||.|||.|.||.||        
BPUM_2985___u    933 TGGGCCGTTCATCCGGCGGATGCTGGAGGAGGAAGTACTACC--------    974

BSNT_02098___    989 AAATGGAAGGTCTT------TCTCAGTATGCTGACGATGTGCT-------   1025
                            |||.|||      ||||        || ||||.|||       
BPUM_2985___u    975 -------AGGGCTTGAGCTCTCTC--------GA-GATGAGCTTCTTCTT   1008

BSNT_02098___   1026 -----------------GAACCGTTTTAAAAACCCGTATATTAAGCATTA   1058
                                      |.|.||.|||...||.||.|.|.|..|||||.|
BPUM_2985___u   1009 TATACACAATCGGTCTGGGATCGCTTTTGCAATCCATTTGTGCAGCATCA   1058

BSNT_02098___   1059 CCTGGAAAGCATTGC-----ATTGAGCT-----CCGTTTCCAAATTCAAA   1098
                               |||||     ||||.|||     ..||.||.||.|||..|
BPUM_2985___u   1059 ----------ATTGCTGGATATTGCGCTTAATGGTGTATCGAAGTTCCGA   1098

BSNT_02098___   1099 ACGAGAAACCTGCCGAC---TCTTAAGGAATATGCTGAACAAAAGGGACA   1145
                     ||..|.|..||.|||.|   .|||   ||.||||.|||.||||||..|||
BPUM_2985___u   1099 ACTCGTATTCTTCCGTCATTGCTT---GATTATGTTGAGCAAAAGAAACA   1145

BSNT_02098___   1146 GCTTCC--TG-AACGCTTGGTGTTTTCTTTCAGC-GCTCTTCTGTATTTT   1191
                     ||||||  || |||   |.||||||||..||||| || ||..|.||||||
BPUM_2985___u   1146 GCTTCCAATGAAAC---TCGTGTTTTCACTCAGCAGC-CTCATTTATTTT   1191

BSNT_02098___   1192 TATCATAATAATGAG-ACATTGC-----------AGGATGATCCGGCAGT   1229
                     || ||       ||| ||| |||           ||||||||..|.|.||
BPUM_2985___u   1192 TA-CA-------GAGCACA-TGCAGAAAAGATAAAGGATGATGAGACGGT   1232

BSNT_02098___   1230 GCTTCAATTTTTCAAAGAGG--TTTGGTGTCAGGAGGATGACGACAT---   1274
                     .||...|||..|.||.||.|  ||||     |.||.| |||..|.||   
BPUM_2985___u   1233 ACTGGCATTCATGAAGGATGTCTTTG-----AAGAAG-TGAACAAATCTA   1276

BSNT_02098___   1275 -----GCTTCGGATTGCATC-AAGAGTGTTAGGCGAACAGCGGCTGTG--   1316
                          ||    |||.|||.| |||   |||   |.|.||     ||||  
BPUM_2985___u   1277 ATGAAGC----GATCGCAGCTAAG---GTT---CTATCA-----TGTGAG   1311

BSNT_02098___   1317 -------GGGGGCAGATCTCAAT------GAGATACCGAAGCTGACTGAT   1353
                            ||||| |||    |||      ||.||||         .||||
BPUM_2985___u   1312 TCATTATGGGGG-AGA----AATTTAACGGATATAC---------ATGAT   1347

BSNT_02098___   1354 AGAGT---CGCTGT-----------TTACTTGAATCTTATTCATGAGCTG   1389
                     ...||   ||||||           ||||||     |.||.||.|||...
BPUM_2985___u   1348 TTGGTTCACGCTGTAGCTGATCAGCTTACTT-----TCATACAGGAGGAA   1392

BSNT_02098___   1390 GGCATGCAGCG-GGCTCTT-GAACAATACTGCATACA-------------   1424
                     ||.||| ||.| ||||.|| .||.|||.||||| |||             
BPUM_2985___u   1393 GGGATG-AGAGCGGCTGTTCAAAGAATGCTGCA-ACATCAATATGAAAGT   1440

BSNT_02098___   1425 -AGAGGGAG-AGGTACGTTGA   1443
                      ||.||||| |||.|   |||
BPUM_2985___u   1441 CAGGGGGAGAAGGCA---TGA   1458


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