Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04939 and BPUM_2980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04939___yvrB.1.24716.seq
# -bsequence dna-align/BPUM_2980.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04939___yvrB-BPUM_2980.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04939___yvrB-BPUM_2980.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: BPUM_2980
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1140
# Identity: 670/1140 (58.8%)
# Similarity: 670/1140 (58.8%)
# Gaps: 237/1140 (20.8%)
# Score: 1957.0
#
#
#=======================================
BSNT_04939___ 0 -------------------------------------------------- 0
BPUM_2980 1 TTGCGAAAAGCATCTATCCTGACACGTTCAAATAAATTCATCATCGCATA 50
BSNT_04939___ 1 -------------------------GTGAGCGTCATCT----TAGGAATT 21
||||||.| | |.|||||.
BPUM_2980 51 CACACTAAGTTCTTTACTTCTTGTGGTGAGCAT----TGGAATGGGAATC 96
BSNT_04939___ 22 TCTTGCGGCAGCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTTG 71
||.|..||.|||.|....|||||.|||||..||.||.|.|||.|.|||..
BPUM_2980 97 TCCTTTGGAAGCTTAGGGATTCCCATTCCTTCTATTCTCCGTATATTTGT 146
BSNT_04939___ 72 GCATCAAGGTTTCGG---------CGGCTCTATCGGTTCTGATGATC-CG 111
.|||.||...||||| .|||.|.||.|.|||...||||| |
BPUM_2980 147 TCATGAACTATTCGGTGTGCAGATAGGCACAATAGATTCAATTGATCGC- 195
BSNT_04939___ 112 ATGTACACTAATATTATGATGAATATCAGACTGCCGAGAGTTGTGCTGGC 161
||||||||||||||||||.|.|||||||||||..|..|.||
BPUM_2980 196 ---------AATATTATGATGAATATCCGGCTGCCGAGAGTGATATTAGC 236
BSNT_04939___ 162 CGCCCTTGTGGGGGCGGCTCTTTC--TATTGCAGGGGCCGCTTTTCAAGG 209
.||.||.||.||.||.||.||..| ||| |.||.||.||||||||.||
BPUM_2980 237 GGCACTAGTCGGAGCAGCGCTGGCGTTAT--CTGGAGCAGCTTTTCAGGG 284
BSNT_04939___ 210 ATTGTTGAAAAATCCGCTTGCTGATCCCTATACGCTAGGTGTGTCATC-C 258
.||.||.||||||||.||.|||||.||.|||||.||.|||||.|| || .
BPUM_2980 285 GTTATTAAAAAATCCTCTAGCTGACCCATATACACTCGGTGTATC-TCAA 333
BSNT_04939___ 259 GGTGCTTCAGTCGGAGCTGTTGTGACTCTGTTCTTAGGTCTGCACCTTCC 308
||.||.|||||.|||||.||.|.|||.||.||.||..||.||||.||.||
BPUM_2980 334 GGGGCATCAGTTGGAGCCGTCGCGACCCTATTTTTCAGTTTGCAGCTCCC 383
BSNT_04939___ 309 TGTCATCGGAGGGTTTACACTCCCGGTTGTGAGTGTAGCCGCGGCACTTG 358
|.|..||||..|.||.||.|||||..||.|.||..|..|..|.|||||||
BPUM_2980 384 TTTGCTCGGCAGTTTCACGCTCCCTTTTTTCAGCATGACAACAGCACTTG 433
BSNT_04939___ 359 ---CCACGATGGCGGCGGTC-CTTTTCTTCAGC-CGCCTCGTTCATGCTT 403
|| |.|||.| .||.|| |||||.| || ||.||.||||| |
BPUM_2980 434 TGACC-CTATGTC-TCGTTCTCTTTTTT---GCGCGTCTTGTTCA----T 474
BSNT_04939___ 404 C----GATG----TCTGTTTCCACCCTC----ATTTTGACCGGTGTCATC 441
| |||| ||| |||| |||||.||.||.||.||.
BPUM_2980 475 CGGGGGATGAGCATCT--------CCTCTTTAATTTTAACAGGGGTGATT 516
BSNT_04939___ 442 ACCAACTCTTTTTTGGGCGCATTTATTTCTCTTATCATCGCCTTGACAGG 491
..||..||||||||||||||..|||||||..|.||.||.||.||.||.||
BPUM_2980 517 TTCAGTTCTTTTTTGGGCGCGCTTATTTCATTGATGATTGCTTTAACGGG 566
BSNT_04939___ 492 AGACAACCTGCTT-----CCGATTGTGCATTGGCTGCTTGGCAGCGTCTC 536
.|| ||.|| ..||||.|.||||||||.||||||||.||.||
BPUM_2980 567 TGA-----TGATTTAAAAGAGATTATTCATTGGCTTCTTGGCAGTGTGTC 611
BSNT_04939___ 537 AATGAGGGGCTGGAGCTATGTTATTTTGTTTCTCCCGTTTTTTCT-TTTG 585
.||||||||||||.|||||.||.|..|.||.||.||.||.||||| .|||
BPUM_2980 612 CATGAGGGGCTGGCGCTATATTGTGCTTTTCCTTCCTTTCTTTCTGATTG 661
BSNT_04939___ 586 GGAACCATT---TTATTGATTATAAACGGAAGGGAACTGAACGTGATGAC 632
|| |||.|| |||||| .|||..|||.|.||..||||.||.|||||
BPUM_2980 662 GG-ACCTTTGCATTATTG---CTAATGGGACGAGATTTGAATGTCATGAC 707
BSNT_04939___ 633 ATATGGAGAAGATAAAGCAAAGCTTCTTGGAGT-CAGTGTTCAGCAGAGG 681
.|||||.||.||.||.||||||||..|.||.|| || ||| |.|.|||
BPUM_2980 708 GTATGGCGAGGAGAAGGCAAAGCTATTAGGTGTACA-TGT---GAAAAGG 753
BSNT_04939___ 682 AAGATGCTGATTT-------TAATAGCCGGATCTCTTTTGACGGGAAGCG 724
| ||..||.| ||.|.||.|||||..|||||||.||.||.|
BPUM_2980 754 A----GCAAATATATCGTGCTACTTGCTGGATCGATTTTGACTGGTAGTG 799
BSNT_04939___ 725 CTGTGGCAGTATCGGGTACGATTGGCTTTGTCGGCCTTGTGATTCCGCAT 774
|.||.||||||||.||.|||||.||.|||||.||.|||||||||||||||
BPUM_2980 800 CAGTAGCAGTATCAGGAACGATCGGATTTGTGGGACTTGTGATTCCGCAT 849
BSNT_04939___ 775 ATCACAAGGCTTTTGTGGGGA------ACGGACCATCGGCATTTACTGCC 818
.|.|...|.||.|| | ||.|||||.|||||..|.|||||
BPUM_2980 850 TTTATTCGCCTCTT------AGCTATCACAGACCACCGGCACCTCCTGCC 893
BSNT_04939___ 819 GCTGTCCGCCTTGCTCGGGGCAGGG-------TTTCTCGTTTTAGCCGAT 861
|.||| |..|||| |.|.|| |||||.||||||||.||.
BPUM_2980 894 GTTGT---CGATGCT----GAATGGCGCTTCCTTTCTTGTTTTAGCAGAC 936
BSNT_04939___ 862 CTGCTTTCCAGAACCATCATTGAGCCGATTGAACTGCCGATCGGGATCAT 911
.||.|.||..|.||.|||||||||||||.||||.|.||||||||.|||||
BPUM_2980 937 GTGTTATCGCGTACGATCATTGAGCCGACTGAATTACCGATCGGCATCAT 986
BSNT_04939___ 912 TACGTCCTTGGCGGGAGCGCCTGTGTTCGCTCTTATTTTAATTCGGCAGC 961
.||..|.||....||.||.||||| ||||||||.|
BPUM_2980 987 CACAGCGTTAATTGGTGCTCCTGT----------------ATTCGGCATC 1020
BSNT_04939___ 962 ACC----------------GCGGGGGGA-GAAGCTTATGA 984
|.| |.||.|||| |.|.| |||||
BPUM_2980 1021 ATCCTCATCCGTAAATATAGAGGAGGGACGCATC-TATGA 1059
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