Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04937 and BPUM_2969

See Amino acid alignment / Visit BSNT_04937 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_04937___yvqK.1.24716.seq
#    -bsequence dna-align/BPUM_2969.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04937___yvqK-BPUM_2969.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04937___yvqK-BPUM_2969.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04937___yvqK
# 2: BPUM_2969
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 627
# Identity:     393/627 (62.7%)
# Similarity:   393/627 (62.7%)
# Gaps:         102/627 (16.3%)
# Score: 1112.5
# 
#
#=======================================

BSNT_04937___      1 ATGAAACTATATACAAAAACAGGCGATAAGGGACAAACGGGCTTAGTCGG     50
                     .|||||||.||||||||||||||||||.|.||.|||||.|||||..||||
BPUM_2969          1 TTGAAACTTTATACAAAAACAGGCGATCAAGGTCAAACAGGCTTGATCGG     50

BSNT_04937___     51 GGGCAGGACGGACAAGGACAGCCTGCGCGTCGAAAGC-TACGGCACGATT     99
                     .|||||.||.||.||.||.....||.|.||.| |.|| |||||||||.|.
BPUM_2969         51 CGGCAGAACTGATAAAGATGATGTGAGGGTAG-AGGCTTACGGCACGTTA     99

BSNT_04937___    100 GACGAGCTTAACAGCTTTATCGGGCTTGCTTTGGCAGAGCTTTCCGGGCA    149
                     ||.|||...||.||.||.||.||.||.||....|||.|  .||.| |.||
BPUM_2969        100 GATGAGGCGAATAGTTTCATTGGACTCGCACATGCAAA--ATTAC-GTCA    146

BSNT_04937___    150 GCTCGG------CTTTGAAGA---TCTGACAGCCGAGCTGCTGACTATCC    190
                     ||..||      .|||.||||   |.||.||   ||||||.|....||.|
BPUM_2969        147 GCATGGTGAATTGTTTCAAGACATTTTGTCA---GAGCTGATTGTGATAC    193

BSNT_04937___    191 AGCATGAGCTGTTTGACTGCGGAGGCGATCTGGCAATCGT-----CACAG    235
                     ||||.|||||||||||||||||.||.|||.|.|||...||     .||.|
BPUM_2969        194 AGCACGAGCTGTTTGACTGCGGCGGTGATTTAGCAGCAGTGAAACTACCG    243

BSNT_04937___    236 AAAGAAAAGACTATAAACTAACGGAAGAATCTGTTTC--TTTTTTAG-AA    282
                     ||||||     ..||||.||||.||||..|||||..|  |..||.|| ||
BPUM_2969        244 AAAGAA-----GGTAAATTAACTGAAGCGTCTGTAGCAGTCCTTGAGCAA    288

BSNT_04937___    283 ACACGCATTGATGCCTATACAGCAGAAGC---GCCGGAACTGAAGAAATT    329
                     |   |.||.||||.||||..||.||||||   ||||   ||.|..|||||
BPUM_2969        289 A---GAATGGATGTCTATGTAGAAGAAGCCGAGCCG---CTCACAAAATT    332

BSNT_04937___    330 TATTCTTCCAGGCGGATCA--AAGGGTGCTTCGCTTCTCCATATCGCACG    377
                     ||||.|.|||||||| |||  || |||||..|.||..|.|||.|.||.||
BPUM_2969        333 TATTTTACCAGGCGG-TCAGGAA-GGTGCAGCTCTCTTACATGTGGCGCG    380

BSNT_04937___    378 CAC---CATTACAAGGCGGGCAGAAC-GAAGAGTGGTGGCGCTGATGAAA    423
                     |||   |.|.|.||   |.|||||.| |.||| |||||.||||...|||.
BPUM_2969        381 CACAGTCGTCAGAA---GAGCAGAGCGGCAGA-TGGTGACGCTTGCGAAG    426

BSNT_04937___    424 TCGGAGGAGATTCATGAAACAGTGCTGCG-----TTATCTCAATCGTCTG    468
                     ..|||||||||||   .|.||||  ||||     .|||.|.||.||.||.
BPUM_2969        427 GAGGAGGAGATTC---CACCAGT--TGCGCTCACGTATGTAAACCGGCTA    471

BSNT_04937___    469 TCCGATTATTTCTTTGCCGCCGCCCGGGTTGTAAATGCA---------AG    509
                     ||.||.|||||.|||||.||||||||..|.||.||| ||         .|
BPUM_2969        472 TCTGACTATTTATTTGCAGCCGCCCGAATCGTGAAT-CATCGGCTCGGTG    520

BSNT_04937___    510 AAGCGGTATTGGCGATGTAGAATATGAAAGAAGTGCCATTGTGTTTCGGG    559
                     ||||        .|||||.|||||||||.|||||||.|..||.|||||| 
BPUM_2969        521 AAGC--------AGATGTCGAATATGAACGAAGTGCAAACGTATTTCGG-    561

BSNT_04937___    560 ACCGAAACAGCAGTGAATCATAA----    582
                                      || |||    
BPUM_2969        562 -----------------TC-TAATTAA    570


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