Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04937 and BPUM_2969
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04937___yvqK.1.24716.seq
# -bsequence dna-align/BPUM_2969.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04937___yvqK-BPUM_2969.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04937___yvqK-BPUM_2969.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04937___yvqK
# 2: BPUM_2969
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 627
# Identity: 393/627 (62.7%)
# Similarity: 393/627 (62.7%)
# Gaps: 102/627 (16.3%)
# Score: 1112.5
#
#
#=======================================
BSNT_04937___ 1 ATGAAACTATATACAAAAACAGGCGATAAGGGACAAACGGGCTTAGTCGG 50
.|||||||.||||||||||||||||||.|.||.|||||.|||||..||||
BPUM_2969 1 TTGAAACTTTATACAAAAACAGGCGATCAAGGTCAAACAGGCTTGATCGG 50
BSNT_04937___ 51 GGGCAGGACGGACAAGGACAGCCTGCGCGTCGAAAGC-TACGGCACGATT 99
.|||||.||.||.||.||.....||.|.||.| |.|| |||||||||.|.
BPUM_2969 51 CGGCAGAACTGATAAAGATGATGTGAGGGTAG-AGGCTTACGGCACGTTA 99
BSNT_04937___ 100 GACGAGCTTAACAGCTTTATCGGGCTTGCTTTGGCAGAGCTTTCCGGGCA 149
||.|||...||.||.||.||.||.||.||....|||.| .||.| |.||
BPUM_2969 100 GATGAGGCGAATAGTTTCATTGGACTCGCACATGCAAA--ATTAC-GTCA 146
BSNT_04937___ 150 GCTCGG------CTTTGAAGA---TCTGACAGCCGAGCTGCTGACTATCC 190
||..|| .|||.|||| |.||.|| ||||||.|....||.|
BPUM_2969 147 GCATGGTGAATTGTTTCAAGACATTTTGTCA---GAGCTGATTGTGATAC 193
BSNT_04937___ 191 AGCATGAGCTGTTTGACTGCGGAGGCGATCTGGCAATCGT-----CACAG 235
||||.|||||||||||||||||.||.|||.|.|||...|| .||.|
BPUM_2969 194 AGCACGAGCTGTTTGACTGCGGCGGTGATTTAGCAGCAGTGAAACTACCG 243
BSNT_04937___ 236 AAAGAAAAGACTATAAACTAACGGAAGAATCTGTTTC--TTTTTTAG-AA 282
|||||| ..||||.||||.||||..|||||..| |..||.|| ||
BPUM_2969 244 AAAGAA-----GGTAAATTAACTGAAGCGTCTGTAGCAGTCCTTGAGCAA 288
BSNT_04937___ 283 ACACGCATTGATGCCTATACAGCAGAAGC---GCCGGAACTGAAGAAATT 329
| |.||.||||.||||..||.|||||| |||| ||.|..|||||
BPUM_2969 289 A---GAATGGATGTCTATGTAGAAGAAGCCGAGCCG---CTCACAAAATT 332
BSNT_04937___ 330 TATTCTTCCAGGCGGATCA--AAGGGTGCTTCGCTTCTCCATATCGCACG 377
||||.|.|||||||| ||| || |||||..|.||..|.|||.|.||.||
BPUM_2969 333 TATTTTACCAGGCGG-TCAGGAA-GGTGCAGCTCTCTTACATGTGGCGCG 380
BSNT_04937___ 378 CAC---CATTACAAGGCGGGCAGAAC-GAAGAGTGGTGGCGCTGATGAAA 423
||| |.|.|.|| |.|||||.| |.||| |||||.||||...|||.
BPUM_2969 381 CACAGTCGTCAGAA---GAGCAGAGCGGCAGA-TGGTGACGCTTGCGAAG 426
BSNT_04937___ 424 TCGGAGGAGATTCATGAAACAGTGCTGCG-----TTATCTCAATCGTCTG 468
..||||||||||| .|.|||| |||| .|||.|.||.||.||.
BPUM_2969 427 GAGGAGGAGATTC---CACCAGT--TGCGCTCACGTATGTAAACCGGCTA 471
BSNT_04937___ 469 TCCGATTATTTCTTTGCCGCCGCCCGGGTTGTAAATGCA---------AG 509
||.||.|||||.|||||.||||||||..|.||.||| || .|
BPUM_2969 472 TCTGACTATTTATTTGCAGCCGCCCGAATCGTGAAT-CATCGGCTCGGTG 520
BSNT_04937___ 510 AAGCGGTATTGGCGATGTAGAATATGAAAGAAGTGCCATTGTGTTTCGGG 559
|||| .|||||.|||||||||.|||||||.|..||.||||||
BPUM_2969 521 AAGC--------AGATGTCGAATATGAACGAAGTGCAAACGTATTTCGG- 561
BSNT_04937___ 560 ACCGAAACAGCAGTGAATCATAA---- 582
|| |||
BPUM_2969 562 -----------------TC-TAATTAA 570
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