Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04929 and BPUM_2966
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04929.1.24716.seq
# -bsequence dna-align/BPUM_2966.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04929-BPUM_2966.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04929-BPUM_2966.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04929
# 2: BPUM_2966
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1155
# Identity: 465/1155 (40.3%)
# Similarity: 465/1155 (40.3%)
# Gaps: 567/1155 (49.1%)
# Score: 775.5
#
#
#=======================================
BSNT_04929 1 ------------------------------------------------AT 2
||
BPUM_2966 1 ATGAAGCGATTAATTGGTCTAATTTGTATACTCGTAGGTGTCTTTTTAAT 50
BSNT_04929 3 GAAAAAAATGCTTGGCAAA---------CTGTTGATCACTGCCGGTATTC 43
||.....||||||..|||| ||.|| |||
BPUM_2966 51 GATTGGGATGCTTTTCAAAAACGAAAATCTCTT--TCA------------ 86
BSNT_04929 44 TGGTTT--GTTTCGCTGTTGTCGT-------------------------- 65
||| ||||| |..|||
BPUM_2966 87 ---TTTGAGTTTC-----TCCCGTGAAAAACCAGTCACAACGGCTTCAGC 128
BSNT_04929 66 ---AAAAGATG----------------------TGTTTGCTGCAGGCCTG 90
|||||||| |.||| |||
BPUM_2966 129 AAAAAAAGATGAAATTGATCAATTAGATATTTCTCTTT---------CTG 169
BSNT_04929 91 GGTTTCATAAATGGCATAGAAGCCGATTCAGCCAGCGCATCG--CCGCGG 138
|.|||| ||.| ||| |.|.|||||.|...|||| ||
BPUM_2966 170 GATTTC-------GCGT-GAA---GGTACAGCCTGAAAATCGTTCC---- 204
BSNT_04929 139 GACATTGACAGCATGGTCATTGAGTCGGATAGCAAGG----ATGTCCGGA 184
||.|||..|...||||||.| ||..||| .|||| |||
BPUM_2966 205 GATATTTCCGTGATGGTCGT--AGGTGGA---AAAGGGAAAATG------ 243
BSNT_04929 185 TTATAGCGGAAGAACGAAGTGACATATCGGCAG-GCATTTCAGGAGACTC 233
||| ||||||.|| ||| ||.|| .|||||.|.| ||
BPUM_2966 244 -TAT-GCGGAACAA-------ACA----GGTAGTACATTTAACG----TC 276
BSNT_04929 234 AGGAAAGTTATTTGTTACTGAAAACAAAAGAAAACTGGAGCTGACCGTAA 283
.| |.||||||| |||
BPUM_2966 277 CG-------------TGCTGAAAA-----------------------TAA 290
BSNT_04929 284 AGGAAAAAGAATTTCAATTTTTGAATGGGTTTAACCGTTC---------- 323
|||| ||| ||.|| |||.|| |||
BPUM_2966 291 AGGA--------TTC--TTGTT-------TTTCAC--TTCATTTGAAAAA 321
BSNT_04929 324 ----AACTCTTATCGTCAGGCTTCCGTATGATTAT-----AAAGGTGATC 364
|||||||| ||.|...|.||....|||||| |||.||||
BPUM_2966 322 GGAGAACTCTTA--GTTAAAATCCCAACAGATTATCATAAAAATGTGA-- 367
BSNT_04929 365 TGGCAG--TACGAACCTC-----AAGCGGCGACTTGTCTGTG-----GCC 402
|| |||| |||||| .|||.||| |.|
BPUM_2966 368 ----AGATTACG------GGTGGAAGCGG-----GGTCAGTGAGATCGAC 402
BSNT_04929 403 GG-GAA-TGACCATCTTGCGCTT----------TCCGGGCTGAACGCAGT 440
|| ||| .|| |.|||.|.||| || ||.||
BPUM_2966 403 GGCGAAGGGA--AGCTTTCTCTTGAAGATGTGATC----CTCAA------ 440
BSNT_04929 441 ATCTGCGAGCGGAAATACGAGCGTGACGGACGTACGCCTTCAAGACCTGA 490
|||..|.|||||||| ||||.|.| ||||
BPUM_2966 441 ATCAACAAGCGGAAA---------------------CCTTAATG--CTGA 467
BSNT_04929 491 AAGTGAAGGCATCATCGGGGGATGTTTCCATTTCAAATACCGTCTCTAAA 540
||| |||| ||| ..||
BPUM_2966 468 ----GAA-----------------TTTC----TCA-----------GCAA 481
BSNT_04929 541 ACAGCCGGCATTGATTTAG--CTTCAGGGGACGCAAATCTGGTTCATGTA 588
||| ||.||| .|..|.|.||| ||||||
BPUM_2966 482 ACA----------ATGTAGAAATCAAAGCGAC----ATCTGG-------- 509
BSNT_04929 589 TCAGGCTCTC-----------TTGATGTGAAAA----------TG----- 612
|||.||||| ||||||.||||| ||
BPUM_2966 510 -CAGACTCTCTGCGTCTCACATTGATGCGAAAAATAGCGATATTGGAGCA 558
BSNT_04929 613 ACTTCAGG------AGATTTTAATGCTGTATTGAAAAAGGTAACCGGTCC 656
||.||||| .|||.||||.|.||| .|||||
BPUM_2966 559 ACCTCAGGCCGTGTCGATATTAAAGATGT-----CAAAGG---------- 593
BSNT_04929 657 CGTATCTGTCACGC---------TGACAAGCGGT-GAT-----GCTAATG 691
||.| |.|| ||||.||.||| ||| ||
BPUM_2966 594 CGAA------ATGCAGCTAGAAATGACGAGTGGTAGATTGACGGC----- 632
BSNT_04929 692 TAAGCCTT--CCCCA---AAAC----GGCTGCTTT-------------GC 719
||||.|| ..||| ||.| |.||.|||| ||
BPUM_2966 633 -AAGCTTTGATACCATTGAATCACCTGTCTCCTTTCATATGACATCAGGC 681
BSNT_04929 720 AG--------TCAA--TGC--------------TTTA---TC-------- 734
|| |.|| ||| |||| ||
BPUM_2966 682 AGCGCAAAATTTAACCTGCCAGATGAAGGAGATTTTAATGTCCAAGTGAA 731
BSNT_04929 735 ---AGCAAGCGGATACGTCAGT-TCG------CCGTATTCATTTGCTGAC 774
|.||||.||| ||| ||| || || |||.|| |||.
BPUM_2966 732 AAAAACAAGTGGA------AGTGTCGACCACACC-TA-TCACTT--TGAT 771
BSNT_04929 775 AAAGCACATA---AAGAACAGCATCACATCACAGGCACGCAAGGAAGCGG 821
.|||||.||| |||.||.| ..|.|.|||||.||||..||||..||
BPUM_2966 772 CAAGCAGATAGTGAAGGACGG---GGCTTTACAGGTACGCGGGGAAAAGG 818
BSNT_04929 822 CCGGCATCCAATCGACATCAAAACGGACAGCGGGGATCT---AGCGATAC 868
....|||..|.||||.||..||| .||||...||.|.|| ||| |.|
BPUM_2966 819 GACACATTTAGTCGATATTGAAA-TGACAAGTGGAAACTTAAAGC--TGC 865
BSNT_04929 869 GGTAG 873
||||.
BPUM_2966 866 GGTAA 870
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