Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04929 and BPUM_2966

See Amino acid alignment / Visit BSNT_04929 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_04929.1.24716.seq
#    -bsequence dna-align/BPUM_2966.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04929-BPUM_2966.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04929-BPUM_2966.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04929
# 2: BPUM_2966
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1155
# Identity:     465/1155 (40.3%)
# Similarity:   465/1155 (40.3%)
# Gaps:         567/1155 (49.1%)
# Score: 775.5
# 
#
#=======================================

BSNT_04929         1 ------------------------------------------------AT      2
                                                                     ||
BPUM_2966          1 ATGAAGCGATTAATTGGTCTAATTTGTATACTCGTAGGTGTCTTTTTAAT     50

BSNT_04929         3 GAAAAAAATGCTTGGCAAA---------CTGTTGATCACTGCCGGTATTC     43
                     ||.....||||||..||||         ||.||  |||            
BPUM_2966         51 GATTGGGATGCTTTTCAAAAACGAAAATCTCTT--TCA------------     86

BSNT_04929        44 TGGTTT--GTTTCGCTGTTGTCGT--------------------------     65
                        |||  |||||     |..|||                          
BPUM_2966         87 ---TTTGAGTTTC-----TCCCGTGAAAAACCAGTCACAACGGCTTCAGC    128

BSNT_04929        66 ---AAAAGATG----------------------TGTTTGCTGCAGGCCTG     90
                        ||||||||                      |.|||         |||
BPUM_2966        129 AAAAAAAGATGAAATTGATCAATTAGATATTTCTCTTT---------CTG    169

BSNT_04929        91 GGTTTCATAAATGGCATAGAAGCCGATTCAGCCAGCGCATCG--CCGCGG    138
                     |.||||       ||.| |||   |.|.|||||.|...||||  ||    
BPUM_2966        170 GATTTC-------GCGT-GAA---GGTACAGCCTGAAAATCGTTCC----    204

BSNT_04929       139 GACATTGACAGCATGGTCATTGAGTCGGATAGCAAGG----ATGTCCGGA    184
                     ||.|||..|...||||||.|  ||..|||   .||||    |||      
BPUM_2966        205 GATATTTCCGTGATGGTCGT--AGGTGGA---AAAGGGAAAATG------    243

BSNT_04929       185 TTATAGCGGAAGAACGAAGTGACATATCGGCAG-GCATTTCAGGAGACTC    233
                      ||| ||||||.||       |||    ||.|| .|||||.|.|    ||
BPUM_2966        244 -TAT-GCGGAACAA-------ACA----GGTAGTACATTTAACG----TC    276

BSNT_04929       234 AGGAAAGTTATTTGTTACTGAAAACAAAAGAAAACTGGAGCTGACCGTAA    283
                     .|             |.|||||||                       |||
BPUM_2966        277 CG-------------TGCTGAAAA-----------------------TAA    290

BSNT_04929       284 AGGAAAAAGAATTTCAATTTTTGAATGGGTTTAACCGTTC----------    323
                     ||||        |||  ||.||       |||.||  |||          
BPUM_2966        291 AGGA--------TTC--TTGTT-------TTTCAC--TTCATTTGAAAAA    321

BSNT_04929       324 ----AACTCTTATCGTCAGGCTTCCGTATGATTAT-----AAAGGTGATC    364
                         ||||||||  ||.|...|.||....||||||     |||.||||  
BPUM_2966        322 GGAGAACTCTTA--GTTAAAATCCCAACAGATTATCATAAAAATGTGA--    367

BSNT_04929       365 TGGCAG--TACGAACCTC-----AAGCGGCGACTTGTCTGTG-----GCC    402
                         ||  ||||           ||||||     .|||.|||     |.|
BPUM_2966        368 ----AGATTACG------GGTGGAAGCGG-----GGTCAGTGAGATCGAC    402

BSNT_04929       403 GG-GAA-TGACCATCTTGCGCTT----------TCCGGGCTGAACGCAGT    440
                     || ||| .||  |.|||.|.|||          ||    ||.||      
BPUM_2966        403 GGCGAAGGGA--AGCTTTCTCTTGAAGATGTGATC----CTCAA------    440

BSNT_04929       441 ATCTGCGAGCGGAAATACGAGCGTGACGGACGTACGCCTTCAAGACCTGA    490
                     |||..|.||||||||                     ||||.|.|  ||||
BPUM_2966        441 ATCAACAAGCGGAAA---------------------CCTTAATG--CTGA    467

BSNT_04929       491 AAGTGAAGGCATCATCGGGGGATGTTTCCATTTCAAATACCGTCTCTAAA    540
                         |||                 ||||    |||           ..||
BPUM_2966        468 ----GAA-----------------TTTC----TCA-----------GCAA    481

BSNT_04929       541 ACAGCCGGCATTGATTTAG--CTTCAGGGGACGCAAATCTGGTTCATGTA    588
                     |||          ||.|||  .|..|.|.|||    ||||||        
BPUM_2966        482 ACA----------ATGTAGAAATCAAAGCGAC----ATCTGG--------    509

BSNT_04929       589 TCAGGCTCTC-----------TTGATGTGAAAA----------TG-----    612
                      |||.|||||           ||||||.|||||          ||     
BPUM_2966        510 -CAGACTCTCTGCGTCTCACATTGATGCGAAAAATAGCGATATTGGAGCA    558

BSNT_04929       613 ACTTCAGG------AGATTTTAATGCTGTATTGAAAAAGGTAACCGGTCC    656
                     ||.|||||      .|||.||||.|.|||     .|||||          
BPUM_2966        559 ACCTCAGGCCGTGTCGATATTAAAGATGT-----CAAAGG----------    593

BSNT_04929       657 CGTATCTGTCACGC---------TGACAAGCGGT-GAT-----GCTAATG    691
                     ||.|      |.||         ||||.||.||| |||     ||     
BPUM_2966        594 CGAA------ATGCAGCTAGAAATGACGAGTGGTAGATTGACGGC-----    632

BSNT_04929       692 TAAGCCTT--CCCCA---AAAC----GGCTGCTTT-------------GC    719
                      ||||.||  ..|||   ||.|    |.||.||||             ||
BPUM_2966        633 -AAGCTTTGATACCATTGAATCACCTGTCTCCTTTCATATGACATCAGGC    681

BSNT_04929       720 AG--------TCAA--TGC--------------TTTA---TC--------    734
                     ||        |.||  |||              ||||   ||        
BPUM_2966        682 AGCGCAAAATTTAACCTGCCAGATGAAGGAGATTTTAATGTCCAAGTGAA    731

BSNT_04929       735 ---AGCAAGCGGATACGTCAGT-TCG------CCGTATTCATTTGCTGAC    774
                        |.||||.|||      ||| |||      || || |||.||  |||.
BPUM_2966        732 AAAAACAAGTGGA------AGTGTCGACCACACC-TA-TCACTT--TGAT    771

BSNT_04929       775 AAAGCACATA---AAGAACAGCATCACATCACAGGCACGCAAGGAAGCGG    821
                     .|||||.|||   |||.||.|   ..|.|.|||||.||||..||||..||
BPUM_2966        772 CAAGCAGATAGTGAAGGACGG---GGCTTTACAGGTACGCGGGGAAAAGG    818

BSNT_04929       822 CCGGCATCCAATCGACATCAAAACGGACAGCGGGGATCT---AGCGATAC    868
                     ....|||..|.||||.||..||| .||||...||.|.||   |||  |.|
BPUM_2966        819 GACACATTTAGTCGATATTGAAA-TGACAAGTGGAAACTTAAAGC--TGC    865

BSNT_04929       869 GGTAG    873
                     ||||.
BPUM_2966        866 GGTAA    870


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