Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04926 and BPUM_2964
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04926___yvqE.1.24716.seq
# -bsequence dna-align/BPUM_2964.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04926___yvqE-BPUM_2964.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04926___yvqE-BPUM_2964.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04926___yvqE
# 2: BPUM_2964
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity: 749/1132 (66.2%)
# Similarity: 749/1132 (66.2%)
# Gaps: 116/1132 (10.2%)
# Score: 2288.5
#
#
#=======================================
BSNT_04926___ 1 ATGAGAAAAAAAATGCTTGCCA-----GCCTCCAATGGCGCGCCATCCGC 45
|||||.||| || ||| |..||||.||||...|.||.||.
BPUM_2964 1 ATGAGGAAA------CT--CCATCTAGGTATCCAGTGGCAATCTATTCGT 42
BSNT_04926___ 46 AT--GACAACGGGAATCAGCCT-GCTCCTTTTTGCCTGCCTGA------T 86
.| ||..| |||| .|| |||...|.|||.|..|.||| |
BPUM_2964 43 CTTGGAGTA-GGGA-----TCTCGCTTGGTGTTGTCATCATGACGATGCT 86
BSNT_04926___ 87 TTCCTTTATGATGTTTTACTATCGGCTCGATCCGCTTGTTTTGCTGTCAT 136
..|| |||.|.|||||.||.|.|||.||||||.|..||.|.||.||..
BPUM_2964 87 GCCC---ATGTTTTTTTATTACCAGCTTGATCCGATGATTCTCCTCTCTA 133
BSNT_04926___ 137 CTAGCTGGTTCGGAATTCCGTTTATCCTGATTTTG----CTTCTGATCA- 181
|..||||||||||.||.|||||| ||||| .|.|||||||
BPUM_2964 134 CCCGCTGGTTCGGCATCCCGTTT-------TTTTGTATTTTACTGATCAT 176
BSNT_04926___ 182 ---GCGTGACCGTCGG--TTTC-GCCTCA-GGGTATATG--TA-CGGCAA 221
.|.|| ||.|.|| |||| |||||| ..||||.|| || |.|||
BPUM_2964 177 TAGTCTTG-CCATTGGGTTTTCTGCCTCACATGTATTTGGTTATCAGCA- 224
BSNT_04926___ 222 CCGGTTGAAGACAA--GGATTGATACA--TTAATTGAATCCATTTTAACC 267
|.|| || |..||||| || || .|.||.||.|||||||..
BPUM_2964 225 -----TAAA---AAGCGTCTTGAT-CAGCTT-GTAGAGTCGATTTTAAAG 264
BSNT_04926___ 268 TTTGAAAACGGCAATTTCGCTTATCGGA-TACCGCCGCTCGGTGATGATG 316
||||||||.||.||.||.||.|| |.|| |.|||.|.||.||.||.||||
BPUM_2964 265 TTTGAAAATGGGAACTTTGCATA-CAGACTGCCGTCTCTTGGCGACGATG 313
BSNT_04926___ 317 AAATCGGCCTGGCTGCTGATCAGCTGAACGAAATGGCGAAGCGCGTGGAA 366
||||.|||.|.||.||.||.||..|.||.||||||||.||.||.||||||
BPUM_2964 314 AAATTGGCTTAGCAGCAGACCAATTAAATGAAATGGCAAAACGAGTGGAA 363
BSNT_04926___ 367 CTTCAAGTCGCATCCCTCCAGAAACTTTCCAATGAACGTGCGGAATGGCA 416
..||||||.||.||..|.||.||.||.||.||||||||.||.||||||||
BPUM_2964 364 GGTCAAGTAGCCTCTTTGCAAAAGCTCTCGAATGAACGGGCTGAATGGCA 413
BSNT_04926___ 417 GGCTCAAATGAAGAAGTCGGTTATCTCAGAAGAACGCCAGCGATTGGCCA 466
||..||||||||.||.|||||..|||||||||||||.|||||..|.||..
BPUM_2964 414 GGTGCAAATGAAAAAATCGGTCGTCTCAGAAGAACGTCAGCGTCTAGCAC 463
BSNT_04926___ 467 GAGATCTTCATGATGCGGTCAGCCAGCAGCTCTTTGCCATATCGATGATG 516
||||.||.|||||||||||||||||||||.|.|||||.||.||.||||||
BPUM_2964 464 GAGAACTGCATGATGCGGTCAGCCAGCAGTTGTTTGCGATTTCAATGATG 513
BSNT_04926___ 517 ACATCAGCCGTGCTGGAACATGTCAAGGATGCTGATGACAAAACAGTCAA 566
||.||.||..|.||.||...|.|.|||||....|||||.||.|...|.||
BPUM_2964 514 ACCTCTGCAATTCTTGAGGGTATGAAGGAAAAGGATGAAAAGATTTTAAA 563
BSNT_04926___ 567 GCGGATCAGGATGGTCGAGCATATGGCAGGCGAAGCCCAAAATGAGATGA 616
||.|||..|..|.|||||.|..|||||.|||||.||.||.|||||.|||.
BPUM_2964 564 GCAGATGCGTCTAGTCGAACGAATGGCTGGCGATGCACAGAATGAAATGC 613
BSNT_04926___ 617 GGGCGCTGCTGCTCCATTTACGGCCTGTTACCCTTGAAGGAAAAGGGCTG 666
|.|||||..||||.|||.|..|.||..|.||||||||||||||||...||
BPUM_2964 614 GAGCGCTTTTGCTACATCTCAGACCGATCACCCTTGAAGGAAAAGACTTG 663
BSNT_04926___ 667 AAGGAGGGCCTTACGGAGCTTTTGGACGAGTTCCGAAAAAAGCAGCCGAT 716
||..|.|||.|.|..||.||..|..|.||.||.|.|..||||||||||||
BPUM_2964 664 AAAAAAGGCTTGATTGAACTCCTAAATGAATTTCAAGCAAAGCAGCCGAT 713
BSNT_04926___ 717 TGATATTGAGTGGGATATACAGGA-------CACAGCGATATCCAAGGGT 759
||||||.||.|||||.|||.|.|| | ||.|.||.||.||.
BPUM_2964 714 TGATATCGATTGGGAAATAGAAGATGATGTTC----CGCTGTCAAAAGGG 759
BSNT_04926___ 760 GTTGAAGACCACTTGTTCAGAATCGTGCAGGAGGCCCTTTCAAACGTATT 809
||.||.||.|||.|.|||.|||||||.|||||.|||.|.|||||.||.||
BPUM_2964 760 GTAGAGGATCACCTCTTCCGAATCGTACAGGAAGCCTTGTCAAATGTGTT 809
BSNT_04926___ 810 TAGACATTCAAAAGCGTCAAAAGTAACCGTGATTCTAGGCATA----AAG 855
.||||||.||||.|||.||||.||.||.|||..||| ||.|| |
BPUM_2964 810 CAGACATGCAAAGGCGACAAAGGTGACAGTGCGTCT--GCTTATTCGA-- 855
BSNT_04926___ 856 AACAGCCAGCTCCGTCTGAAGGTGATTGATAATGGAAAAGGCTTTAAAAT 905
||..|.|||.|.|..||||||.|.||.||.|||||.|..||||||.|||.
BPUM_2964 856 AATCGGCAGGTGCAGCTGAAGATTATCGACAATGGCATCGGCTTTCAAAC 905
BSNT_04926___ 906 GGACCAGGTGAAAGCATCCTCATACGGATTGAATTCTA----TGAAAGAA 951
.||.||.|||||..|..||||.||||||.||.|.||.| ||||||||
BPUM_2964 906 AGATCATGTGAAGACGGCCTCCTACGGACTGGAATCCATTCGTGAAAGAA 955
BSNT_04926___ 952 CGTGCAAGTGAAATCGGCGGGGTCGCCGAAGTGATTTCAGTAGAAGGAAA 1001
||||||||.|.|||||.|||||.||..|.||.|||.|.||||||||
BPUM_2964 956 ----CAAGTGAAGTAGGCGGTGTCGCAGAGATTATGTCATTTGAAGGAAA 1001
BSNT_04926___ 1002 AGGCACCCAAATCGAAGTGAAGGTCCCGATTTTCCCGGAAGAAAAAGGAG 1051
|||.||.|||||.||.||||||||.||.|||||....||||.||||||||
BPUM_2964 1002 AGGAACACAAATTGATGTGAAGGTTCCCATTTTTGATGAAGGAAAAGGAG 1051
BSNT_04926___ 1052 AGAACGAACGTGATTCGAGTATTATTGATTGA 1083
|||||| ||||| |||
BPUM_2964 1052 AGAACG-------TTCGA-------TGA---- 1065
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