Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04922 and BPUM_2960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04922___gerAB.1.24716.seq
# -bsequence dna-align/BPUM_2960___gerAB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04922___gerAB-BPUM_2960___gerAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04922___gerAB-BPUM_2960___gerAB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04922___gerAB
# 2: BPUM_2960___gerAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1258
# Identity: 703/1258 (55.9%)
# Similarity: 703/1258 (55.9%)
# Gaps: 323/1258 (25.7%)
# Score: 1770.0
#
#
#=======================================
BSNT_04922___ 1 ATGAGCCAA--AAACAGACTCCACTGAAACTTAATACCTTTCAAGGTAT- 47
||| |.||| |.|.|||.||.| |.|||||.|||
BPUM_2960___g 1 ATG-GTCAATCATAAAGAGTCGA---------------TATCAAGCTATC 34
BSNT_04922___ 48 -------TTCTATTGTTGCAAATACAATGCTTGGGGCCGGACTTTTAACA 90
|.|.|||.||||.|||||||..||.||.|| ||.|.|.|..|
BPUM_2960___g 35 AGGCAAGTGCCATTATTGCGAATACAACACTAGGTGC--GAGTATGATGA 82
BSNT_04922___ 91 TTGCCGCGAGCGCTGACCA----------CTAAGGCT---AATACGCCTG 127
|| || |||| ||.||||| ..|||.||||
BPUM_2960___g 83 TT----------CT-ACCACGTTCAATGGCTCAGGCTGCGGCTACACCTG 121
BSNT_04922___ 128 ACGGCTGGAT--CACGCTGA--TATTAGAAGGTTTCATTTTTATTTTCTT 173
|||||||||| |||.||.| .||.| ||.||||||..|||.|.||
BPUM_2960___g 122 ACGGCTGGATTGCACTCTTACTCATGA----GTGTCATTTACATTGTGTT 167
BSNT_04922___ 174 CATTTATTTAAACACGCTCATTCAGAAAAAACATCAATACCCTTCACTCT 223
.||||.|...||....|||||...|||||| |.|.||||||.| ||
BPUM_2960___g 168 TATTTTTGCGAATGTCCTCATGATGAAAAA-----AGTCCCCTTCTC-CT 211
BSNT_04922___ 224 ----TT--GAATATTTGAAGGAAGGGCTTGGGAAATGGATCGG------- 260
|| ||.|||..|||.||.||.|||||.||.|||||.||
BPUM_2960___g 212 CATATTACGATTATACGAATGAGGGCCTTGGAAAGTGGATTGGTGCGCTT 261
BSNT_04922___ 261 --CAGCATCATCGGCCTTTTGATCTGCGGCTATTTCCTCGGCGTAGCCAG 308
||.|.||.| |.||.|.|| .|||||.||.||.||||||||
BPUM_2960___g 262 GCCAACCTCCT---CATTATTAT------TTATTTTCTAGGAGTAGCCAG 302
BSNT_04922___ 309 C-------TTCGAGACACGGGCAATGGCTGAAATGGTGAAGTTTTTCCTG 351
| ||||| ||.|||.|.|||||||||||.||.||.|||
BPUM_2960___g 303 CTATGAAGTTCGA-------GCGATGTCGGAAATGGTGAAATTCTTTCTG 345
BSNT_04922___ 352 CTGGAGAGAACCCCAAT-------TCAAGTCATCATTTTAACGTTTATT- 393
||..|.|..||.||..| .||| |.||||.| ||||||
BPUM_2960___g 346 CTTCAAAACACACCTGTAGCGGTGACAA-TGATCAGT------TTTATTG 388
BSNT_04922___ 394 TGCTGCGGTATTTATTTAATCGTTGG-GGGCTTAAGTGATGTGTCGCGGC 442
||.| .|||.|||||.|..|..|||| |||.|| .|||||.|..||.|||
BPUM_2960___g 389 TGGT-TGGTTTTTATCTTGTGATTGGCGGGATT-GGTGATTTAGCGAGGC 436
BSNT_04922___ 443 TGTTTCCCTTTTATT-------TAACGGTAACCA--TTATTATTTTGCTG 483
| |||.||||||||| |.|||.|.|.|| ||||| |.|.|||
BPUM_2960___g 437 T-TTTTCCTTTTATTCTGATTGTGACGCTCATCATCTTATT-TGTCGCT- 483
BSNT_04922___ 484 ATTGTGTTCGGGATCAGTTT--TAAAATTTTTGATATCAATAATTTGCGT 531
|.|||..|.||.|| .|.|||||..|.|| .||||..|.||.
BPUM_2960___g 484 ------TACGGACTTAGCTTGCAAGAATTTAAGTTA--GATAACCTTCGA 525
BSNT_04922___ 532 CCTGTTTTAGGCGAAGGCCTTGGACCCATTGCAAACTCCCTTACCGTCGT 581
||.||||||||.||.|| ||| |||||.|..|.||..
BPUM_2960___g 526 CCCGTTTTAGGAGAGGG----------ATT-----CTCCCCTGTCTTCAA 560
BSNT_04922___ 582 TT---------------CCATCTCTTTTTTAGGAATGGAAGTGATGCTGT 616
|| ||||.||.|||.|.||.||.|||.|||||||||
BPUM_2960___g 561 TTCCTTTAATGCATCAGCCATATCGTTTGTCGGCATTGAAATGATGCTGT 610
BSNT_04922___ 617 TTCTTCCTGAACATATGAAGAAAAAGAAATACACGTTCAGATATG----C 662
||.|.||||...|||||||.|...|.|||.||||.||....|||| |
BPUM_2960___g 611 TTATGCCTGCTTATATGAACACGCAAAAACACACCTTTGCTTATGGAACC 660
BSNT_04922___ 663 GTCTCTAGGATTTTTAATTC---CGATTATTTTATATATCCTTACGTATA 709
||| ||.|||||.|||| |||||| |.|||||..|.||.||||
BPUM_2960___g 661 GTC----GGCTTTTTGATTCCTGCGATTA---TCTATATTTTCACTTATA 703
BSNT_04922___ 710 TTATCGTTGTCGGAGCTTTGACCGCTCCCGAGGTAA--AAACG------C 751
||.|.||.||.||.||.|||||.| || || ||||| .
BPUM_2960___g 704 TTCTTGTGGTTGGTGCGTTGACTG-TC-------AAAGAAACGGCGACTT 745
BSNT_04922___ 752 TGATTTGGCCGACTATTTCTCTCTTTCAGTCCTTTGAGCTTAAAGGCATA 801
|||.||||||.||.|||.|..|.|||||..|||||||..||.||||..|.
BPUM_2960___g 746 TGACTTGGCCAACCATTGCCTTGTTTCAAGCCTTTGATATTCAAGGGGTT 795
BSNT_04922___ 802 TTTATTGAACGGTTTGAATCGTTTTTACTGGTGGTCTGGATCATCCAGTT 851
|||||||||||..||||.||.|||||.|||.|.||.|||.||.|.|||.|
BPUM_2960___g 796 TTTATTGAACGAATTGACTCCTTTTTGCTGATCGTTTGGCTCGTTCAGCT 845
BSNT_04922___ 852 TTTCACCACATTTGTCATTTACGG--ATAC----TTTGCCGCTAACGG-- 893
.|..||.|..||||| ||| |||| |||||.||.|.|||
BPUM_2960___g 846 GTATACAAGCTTTGT------CGGGTATACATTTTTTGCTGCAATCGGTG 889
BSNT_04922___ 894 -------GCTAAAGAAGACATTTGGATTATCGACTAAAACAAGCATGGT- 935
.||||.|||| ||| .||||| |.|||
BPUM_2960___g 890 TATCTAAACTAACGAAG---TTT---------CCTAAA------AAGGTC 921
BSNT_04922___ 936 ------GATT--ATCGGTATAGCGGT---CTTT-----TATTTTTCTCTC 969
|.|| ||.||.||.|.|.| |||| ||||||.|
BPUM_2960___g 922 GTCCTCGCTTTAATGGGAATTGTGATTTACTTTGCAGCTATTTTCC---- 967
BSNT_04922___ 970 TGGCCGGATGACGCCAATCAAGTCATGATGT--ATA------GCGATTAT 1011
||| |.||||| ||| |.||||||
BPUM_2960___g 968 ------------------CAA---AGGATGTGGATACAGTGCGAGATTAT 996
BSNT_04922___ 1012 CTTGGCTATAT----------TTTTGTCTCC--CTGTT---TCTGCTTCC 1046
.|...||||.| |||| ||| ||||| |.|.||.||
BPUM_2960___g 997 TTAACCTATGTGAACAACCTCTTTT---TCCTACTGTTCGGTATTCTCCC 1043
BSNT_04922___ 1047 GTTCATTCTC---TTTTTCATTGTAGCTCTCAA---GAGGAGGATTACAG 1090
|| ||||| |||||.|||||...|.|||| ||||.|||..||||
BPUM_2960___g 1044 GT---TTCTCTTATTTTTTATTGTTTATATCAAAAGGAGGCGGAAAACAG 1090
BSNT_04922___ 1091 CAAAATGA 1098
| ||||
BPUM_2960___g 1091 C---ATGA 1095
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