Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04921 and BPUM_2959

See Amino acid alignment / Visit BSNT_04921 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_04921___gerAA.1.24716.seq
#    -bsequence dna-align/BPUM_2959___gerAA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04921___gerAA-BPUM_2959___gerAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04921___gerAA-BPUM_2959___gerAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04921___gerAA
# 2: BPUM_2959___gerAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity:     978/1545 (63.3%)
# Similarity:   978/1545 (63.3%)
# Gaps:         216/1545 (14.0%)
# Score: 2846.0
# 
#
#=======================================

BSNT_04921___      1 TTGGAACAAACAGA----GTTTAAGGAATATATACACGATAATTT----A     42
                     |||    ||.||||    .||.||.||..|..||.||||||||.|    .
BPUM_2959___g      1 TTG----AATCAGACTCCATTGAAAGAGCACTTATACGATAATCTCTCCG     46

BSNT_04921___     43 GCATTGGTGCTGCCAAAATTAAAAGAAAACGATGATCTGGTGAAAAACAA     92
                     .||||    ||.||..|||||||.||||..||||||.||||..|..|.||
BPUM_2959___g     47 TCATT----CTCCCGCAATTAAAGGAAATGGATGATTTGGTCCATGAGAA     92

BSNT_04921___     93 AAAAATGCTTGCGAACGGACTGGTTTTTTACTATCTCTATTTCAGTGAAC    142
                     |||||.|||..|..||||.|..|||.||||||||.|.||..|.|..|||.
BPUM_2959___g     93 AAAAACGCTGCCTCACGGGCAAGTTGTTTACTATTTATACATAAAAGAAA    142

BSNT_04921___    143 TGACTGATGAGAATAAGGTGTCAGAAGCCATT-AAAACTTTAATTAAAGA    191
                     |||      |.||.|||.||      |..||| |||.||||  ||||||.
BPUM_2959___g    143 TGA------ACAAAAAGATG------GAGATTCAAACCTTT--TTAAAGC    178

BSNT_04921___    192 TG-------AGGAGACCTTAACG-CT-TGACCAGGTCAAAAAACGC----    228
                     ||       |  |||.|.| ||| || ||||.|    ||.|.|.||    
BPUM_2959___g    179 TGCTTCTCCA--AGATCAT-ACGTCTCTGACGA----AAGAGAAGCTCGA    221

BSNT_04921___    229 --CT-------------TGACCAGCTTG-ACG--CAAGACCTGTTGAAAC    260
                       ||             |||||| ||.| .||  ||||||||        
BPUM_2959___g    222 ATCTAATTTATCCATGATGACCA-CTCGTTCGGTCAAGACCT--------    262

BSNT_04921___    261 CGCAAAAAAAACGATTGAATCGATTCTCAACGGCAATTGTGCTGTGTTTA    310
                       |..||.||..|.||||..|.|||.|..|.||..||||.|..|||.|.|
BPUM_2959___g    263 --CTGAAGAATTGGTTGATGCAATTTTTGAAGGTCATTGCGTAGTGCTAA    310

BSNT_04921___    311 TCAACGGATTGGATAAAGCCTATATTCTGACCACAGGAAAGAAAAAAA--    358
                     |.||||||||..|..|.||.|||||..|           |||||.|||  
BPUM_2959___g    311 TTAACGGATTTAAGCATGCTTATATATT-----------AGAAACAAATG    349

BSNT_04921___    359 ----CAAGAAGCCTGACA--------GAGCCGACAACTGAAATAGTGGTT    396
                         .|||||.|   .||        ||..|.||..||||||.|||.||.
BPUM_2959___g    350 GAACGAAGAAAC---GCAGTTTAGGGGATGCTACCTCTGAAACAGTCGTA    396

BSNT_04921___    397 CGCGG-CCCAAAAGTAGCGTTTGTAGAGGATATCGATACAAATCTCGCTC    445
                     .|.|| |||||||.|.|| |||.|.||.|||.|..||||.|||.|.||.|
BPUM_2959___g    397 AGAGGACCCAAAATTGGC-TTTATTGAAGATTTAAATACGAATTTAGCGC    445

BSNT_04921___    446 TGATTAGACA-------AAGAACCTCTCATCCGAAATTGATCACCAAAA-    487
                     |..|.|||||       ||.|       ||||     |||| ..||||| 
BPUM_2959___g    446 TTGTAAGACAGCGCTTGAAAA-------ATCC-----TGAT-GTCAAAAC    482

BSNT_04921___    488 -----AAATCATGATCGG-----CGAAA-ACAAGCTGAAGCCCGCAGCCA    526
                          |.||.|.|||.||     .|||| |||  |..|||.|    .|||
BPUM_2959___g    483 CGTCGATATGAAGATTGGTCTACAGAAATACA--CCCAAGTC----ACCA    526

BSNT_04921___    527 TTATGTACATTGAAGGCAAAGCAAAAAAGT--CCGTCATAAAAGAAGTGA    574
                     |.|||||.||.||.||  .|.|..|.||||  |.||..||||.|||||.|
BPUM_2959___g    527 TCATGTATATCGACGG--TATCGTACAAGTACCTGTTTTAAAGGAAGTCA    574

BSNT_04921___    575 AGGCGCGGCTTAA--AAATATCCAGCTGGAAGATATCCAGGACAGCGGAA    622
                     |...||||||.||  ||.||.|||  |.||.|||||.||||||...||..
BPUM_2959___g    575 AAAAGCGGCTCAAGCAAGTAACCA--TTGATGATATACAGGACTCTGGTG    622

BSNT_04921___    623 CGCTCGAGGAACTCATTGAAGATAATAAATATTCACCATTTCCGCAGATT    672
                     ..||.|||||.|||||||||||||||..|||.||.||.|||||.||.|||
BPUM_2959___g    623 TTCTTGAGGAGCTCATTGAAGATAATGTATACTCTCCTTTTCCACAAATT    672

BSNT_04921___    673 CAAAATACGGAAAGACCTGACAAAGTATCTTCAGCCCTGTT----TAACG    718
                     ||||||||.|||||.||.||.|||||..|.||.||    ||    |||.|
BPUM_2959___g    673 CAAAATACAGAAAGGCCAGATAAAGTGGCGTCTGC----TTTAAATAATG    718

BSNT_04921___    719 GCCGTGTGGCAATTTTGGTCGATGGTTCACCATTTGTGCTGCTGGTGCCG    768
                     ||||.||.||.||.||.||||||..||||||.||||||||..|.||.||.
BPUM_2959___g    719 GCCGGGTTGCCATCTTTGTCGATCATTCACCTTTTGTGCTCGTTGTACCT    768

BSNT_04921___    769 GTTTCTCTCGGCATCCTGATGCAATCCCCGGATGACTACTATGAACGCTG    818
                     |.|||.||||..|...|.||||||||.||.|||||.||.||||||.|.||
BPUM_2959___g    769 GCTTCGCTCGCGACAATTATGCAATCACCTGATGATTATTATGAAAGGTG    818

BSNT_04921___    819 GATTTCAGCATCTCTTATCCGGTCGCTGCGCTATGCTTCTATCTTTATCA    868
                     |||..|.||.||.||.||.||...||||||.|.|.|.||.||||||.|.|
BPUM_2959___g    819 GATCGCTGCCTCACTCATTCGTATGCTGCGGTTTACCTCAATCTTTCTGA    868

BSNT_04921___    869 CCTTGTTTTTGTCATCGATTTATATAGCACTTGTTTCCTTCCATCAGGGG    918
                     |.||.|||||.|||.|.||||||||.||||||||.||.||||||||.||.
BPUM_2959___g    869 CGTTATTTTTATCAGCCATTTATATTGCACTTGTGTCATTCCATCAAGGT    918

BSNT_04921___    919 CTGCTGCCGACCGCGCTCGCCGTTACAATTTCG-GCGAAC-AGGGAAAAC    966
                     ||..||||.|||.|..|.||..|||||||.||| ||  || ||||||||.
BPUM_2959___g    919 CTTTTGCCAACCACTTTGGCGATTACAATCTCGAGC--ACAAGGGAAAAT    966

BSNT_04921___    967 GTGCCGTTCCCTCCGATATTTGAAGCCCTGCTGATGGAAGTCACCATCGA   1016
                     ||.||.||..|.||.||..|.|||||.||..|.||||||.|.||.||.||
BPUM_2959___g    967 GTCCCATTTTCACCCATTGTCGAAGCTCTCATCATGGAAATAACGATTGA   1016

BSNT_04921___   1017 GCTGCTAAGGGAAGCCGGACTGCGACTCCCCAATCCGCTCGGACAGACGA   1066
                     .|||||..|||||||.||..|..|.||.||.|||||.||.||||||||||
BPUM_2959___g   1017 ACTGCTGCGGGAAGCTGGCTTAAGGCTGCCAAATCCACTTGGACAGACGA   1066

BSNT_04921___   1067 TCGGCCTCGTTGGGGGCGTAGTCATCGGACAGGCTGCTGTAGAAGCGAAT   1116
                     ||||.||.|||||.|||||.||.||.|||||||||||.||..|.||..||
BPUM_2959___g   1067 TCGGACTTGTTGGCGGCGTTGTTATTGGACAGGCTGCCGTTCAGGCACAT   1116

BSNT_04921___   1117 CTCGTCAGTTCGATTATGGTCATTGTCGTCAGTGTCATTGCCCTGGCATC   1166
                     .|.|||||.|||||||||||.|||.||||.|||||||||||.||.|||||
BPUM_2959___g   1117 ATTGTCAGCTCGATTATGGTGATTATCGTGAGTGTCATTGCACTTGCATC   1166

BSNT_04921___   1167 CTTTACCGTTCCTCAATACGGAATGGGTCTGTCTTTCCGGGTGCTGCGTT   1216
                     ||||||.|||||||||||.||.|||||..||||.||.||.|||||.||||
BPUM_2959___g   1167 CTTTACTGTTCCTCAATATGGGATGGGCATGTCCTTTCGTGTGCTTCGTT   1216

BSNT_04921___   1217 TTATTTCGATGTTTTCCGCCGCTATTTTAGGGCTGTACGGCATTATTTTA   1266
                     ||.|.||.||||||.|.||.||.|..||.||..|.|||||.|||....|.
BPUM_2959___g   1217 TTGTGTCCATGTTTGCTGCGGCGACCTTTGGTTTATACGGGATTGCGCTG   1266

BSNT_04921___   1267 TTTATGCTTGTCGTTTATACGCACTTAACGAGACAAACGAGCTTTGGGTC   1316
                     ||||||||.|||.|...|||.||..|.|||.|.||||..||.|||||..|
BPUM_2959___g   1267 TTTATGCTCGTCCTCCTTACTCATCTCACGCGGCAAAAAAGTTTTGGCAC   1316

BSNT_04921___   1317 TCCGTATTTTTCGCCAAACGGAT----TCTTTAGCCTGAAAAATACGGAT   1362
                     .||||||||.||.|||    |||    |.||.|||...|||||   .||.
BPUM_2959___g   1317 ACCGTATTTCTCACCA----GATTTTGTGTTCAGCTATAAAAA---CGAA   1359

BSNT_04921___   1363 GAC---TCCATTATCCG-TCTCCCAATTAAAAACAAACCAAAAGAGGCGA   1408
                     |||   ||||||||.|| |..|||  |||||   |||.|||.||      
BPUM_2959___g   1360 GACAATTCCATTATTCGATTGCCC--TTAAA---AAATCAACAG------   1398

BSNT_04921___   1409 ATAATCCAAATGAGCCAAAAAC-AGACTCCACTG---AAACTTAA   1449
                            |||.|||     ||| |||      ||   ||.|.|||
BPUM_2959___g   1399 -------AAAGGAG-----AACGAGA------TGGTCAATCATAA   1425


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.