Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04921 and BPUM_2959
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04921___gerAA.1.24716.seq
# -bsequence dna-align/BPUM_2959___gerAA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04921___gerAA-BPUM_2959___gerAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04921___gerAA-BPUM_2959___gerAA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04921___gerAA
# 2: BPUM_2959___gerAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity: 978/1545 (63.3%)
# Similarity: 978/1545 (63.3%)
# Gaps: 216/1545 (14.0%)
# Score: 2846.0
#
#
#=======================================
BSNT_04921___ 1 TTGGAACAAACAGA----GTTTAAGGAATATATACACGATAATTT----A 42
||| ||.|||| .||.||.||..|..||.||||||||.| .
BPUM_2959___g 1 TTG----AATCAGACTCCATTGAAAGAGCACTTATACGATAATCTCTCCG 46
BSNT_04921___ 43 GCATTGGTGCTGCCAAAATTAAAAGAAAACGATGATCTGGTGAAAAACAA 92
.|||| ||.||..|||||||.||||..||||||.||||..|..|.||
BPUM_2959___g 47 TCATT----CTCCCGCAATTAAAGGAAATGGATGATTTGGTCCATGAGAA 92
BSNT_04921___ 93 AAAAATGCTTGCGAACGGACTGGTTTTTTACTATCTCTATTTCAGTGAAC 142
|||||.|||..|..||||.|..|||.||||||||.|.||..|.|..|||.
BPUM_2959___g 93 AAAAACGCTGCCTCACGGGCAAGTTGTTTACTATTTATACATAAAAGAAA 142
BSNT_04921___ 143 TGACTGATGAGAATAAGGTGTCAGAAGCCATT-AAAACTTTAATTAAAGA 191
||| |.||.|||.|| |..||| |||.|||| ||||||.
BPUM_2959___g 143 TGA------ACAAAAAGATG------GAGATTCAAACCTTT--TTAAAGC 178
BSNT_04921___ 192 TG-------AGGAGACCTTAACG-CT-TGACCAGGTCAAAAAACGC---- 228
|| | |||.|.| ||| || ||||.| ||.|.|.||
BPUM_2959___g 179 TGCTTCTCCA--AGATCAT-ACGTCTCTGACGA----AAGAGAAGCTCGA 221
BSNT_04921___ 229 --CT-------------TGACCAGCTTG-ACG--CAAGACCTGTTGAAAC 260
|| |||||| ||.| .|| ||||||||
BPUM_2959___g 222 ATCTAATTTATCCATGATGACCA-CTCGTTCGGTCAAGACCT-------- 262
BSNT_04921___ 261 CGCAAAAAAAACGATTGAATCGATTCTCAACGGCAATTGTGCTGTGTTTA 310
|..||.||..|.||||..|.|||.|..|.||..||||.|..|||.|.|
BPUM_2959___g 263 --CTGAAGAATTGGTTGATGCAATTTTTGAAGGTCATTGCGTAGTGCTAA 310
BSNT_04921___ 311 TCAACGGATTGGATAAAGCCTATATTCTGACCACAGGAAAGAAAAAAA-- 358
|.||||||||..|..|.||.|||||..| |||||.|||
BPUM_2959___g 311 TTAACGGATTTAAGCATGCTTATATATT-----------AGAAACAAATG 349
BSNT_04921___ 359 ----CAAGAAGCCTGACA--------GAGCCGACAACTGAAATAGTGGTT 396
.|||||.| .|| ||..|.||..||||||.|||.||.
BPUM_2959___g 350 GAACGAAGAAAC---GCAGTTTAGGGGATGCTACCTCTGAAACAGTCGTA 396
BSNT_04921___ 397 CGCGG-CCCAAAAGTAGCGTTTGTAGAGGATATCGATACAAATCTCGCTC 445
.|.|| |||||||.|.|| |||.|.||.|||.|..||||.|||.|.||.|
BPUM_2959___g 397 AGAGGACCCAAAATTGGC-TTTATTGAAGATTTAAATACGAATTTAGCGC 445
BSNT_04921___ 446 TGATTAGACA-------AAGAACCTCTCATCCGAAATTGATCACCAAAA- 487
|..|.||||| ||.| |||| |||| ..|||||
BPUM_2959___g 446 TTGTAAGACAGCGCTTGAAAA-------ATCC-----TGAT-GTCAAAAC 482
BSNT_04921___ 488 -----AAATCATGATCGG-----CGAAA-ACAAGCTGAAGCCCGCAGCCA 526
|.||.|.|||.|| .|||| ||| |..|||.| .|||
BPUM_2959___g 483 CGTCGATATGAAGATTGGTCTACAGAAATACA--CCCAAGTC----ACCA 526
BSNT_04921___ 527 TTATGTACATTGAAGGCAAAGCAAAAAAGT--CCGTCATAAAAGAAGTGA 574
|.|||||.||.||.|| .|.|..|.|||| |.||..||||.|||||.|
BPUM_2959___g 527 TCATGTATATCGACGG--TATCGTACAAGTACCTGTTTTAAAGGAAGTCA 574
BSNT_04921___ 575 AGGCGCGGCTTAA--AAATATCCAGCTGGAAGATATCCAGGACAGCGGAA 622
|...||||||.|| ||.||.||| |.||.|||||.||||||...||..
BPUM_2959___g 575 AAAAGCGGCTCAAGCAAGTAACCA--TTGATGATATACAGGACTCTGGTG 622
BSNT_04921___ 623 CGCTCGAGGAACTCATTGAAGATAATAAATATTCACCATTTCCGCAGATT 672
..||.|||||.|||||||||||||||..|||.||.||.|||||.||.|||
BPUM_2959___g 623 TTCTTGAGGAGCTCATTGAAGATAATGTATACTCTCCTTTTCCACAAATT 672
BSNT_04921___ 673 CAAAATACGGAAAGACCTGACAAAGTATCTTCAGCCCTGTT----TAACG 718
||||||||.|||||.||.||.|||||..|.||.|| || |||.|
BPUM_2959___g 673 CAAAATACAGAAAGGCCAGATAAAGTGGCGTCTGC----TTTAAATAATG 718
BSNT_04921___ 719 GCCGTGTGGCAATTTTGGTCGATGGTTCACCATTTGTGCTGCTGGTGCCG 768
||||.||.||.||.||.||||||..||||||.||||||||..|.||.||.
BPUM_2959___g 719 GCCGGGTTGCCATCTTTGTCGATCATTCACCTTTTGTGCTCGTTGTACCT 768
BSNT_04921___ 769 GTTTCTCTCGGCATCCTGATGCAATCCCCGGATGACTACTATGAACGCTG 818
|.|||.||||..|...|.||||||||.||.|||||.||.||||||.|.||
BPUM_2959___g 769 GCTTCGCTCGCGACAATTATGCAATCACCTGATGATTATTATGAAAGGTG 818
BSNT_04921___ 819 GATTTCAGCATCTCTTATCCGGTCGCTGCGCTATGCTTCTATCTTTATCA 868
|||..|.||.||.||.||.||...||||||.|.|.|.||.||||||.|.|
BPUM_2959___g 819 GATCGCTGCCTCACTCATTCGTATGCTGCGGTTTACCTCAATCTTTCTGA 868
BSNT_04921___ 869 CCTTGTTTTTGTCATCGATTTATATAGCACTTGTTTCCTTCCATCAGGGG 918
|.||.|||||.|||.|.||||||||.||||||||.||.||||||||.||.
BPUM_2959___g 869 CGTTATTTTTATCAGCCATTTATATTGCACTTGTGTCATTCCATCAAGGT 918
BSNT_04921___ 919 CTGCTGCCGACCGCGCTCGCCGTTACAATTTCG-GCGAAC-AGGGAAAAC 966
||..||||.|||.|..|.||..|||||||.||| || || ||||||||.
BPUM_2959___g 919 CTTTTGCCAACCACTTTGGCGATTACAATCTCGAGC--ACAAGGGAAAAT 966
BSNT_04921___ 967 GTGCCGTTCCCTCCGATATTTGAAGCCCTGCTGATGGAAGTCACCATCGA 1016
||.||.||..|.||.||..|.|||||.||..|.||||||.|.||.||.||
BPUM_2959___g 967 GTCCCATTTTCACCCATTGTCGAAGCTCTCATCATGGAAATAACGATTGA 1016
BSNT_04921___ 1017 GCTGCTAAGGGAAGCCGGACTGCGACTCCCCAATCCGCTCGGACAGACGA 1066
.|||||..|||||||.||..|..|.||.||.|||||.||.||||||||||
BPUM_2959___g 1017 ACTGCTGCGGGAAGCTGGCTTAAGGCTGCCAAATCCACTTGGACAGACGA 1066
BSNT_04921___ 1067 TCGGCCTCGTTGGGGGCGTAGTCATCGGACAGGCTGCTGTAGAAGCGAAT 1116
||||.||.|||||.|||||.||.||.|||||||||||.||..|.||..||
BPUM_2959___g 1067 TCGGACTTGTTGGCGGCGTTGTTATTGGACAGGCTGCCGTTCAGGCACAT 1116
BSNT_04921___ 1117 CTCGTCAGTTCGATTATGGTCATTGTCGTCAGTGTCATTGCCCTGGCATC 1166
.|.|||||.|||||||||||.|||.||||.|||||||||||.||.|||||
BPUM_2959___g 1117 ATTGTCAGCTCGATTATGGTGATTATCGTGAGTGTCATTGCACTTGCATC 1166
BSNT_04921___ 1167 CTTTACCGTTCCTCAATACGGAATGGGTCTGTCTTTCCGGGTGCTGCGTT 1216
||||||.|||||||||||.||.|||||..||||.||.||.|||||.||||
BPUM_2959___g 1167 CTTTACTGTTCCTCAATATGGGATGGGCATGTCCTTTCGTGTGCTTCGTT 1216
BSNT_04921___ 1217 TTATTTCGATGTTTTCCGCCGCTATTTTAGGGCTGTACGGCATTATTTTA 1266
||.|.||.||||||.|.||.||.|..||.||..|.|||||.|||....|.
BPUM_2959___g 1217 TTGTGTCCATGTTTGCTGCGGCGACCTTTGGTTTATACGGGATTGCGCTG 1266
BSNT_04921___ 1267 TTTATGCTTGTCGTTTATACGCACTTAACGAGACAAACGAGCTTTGGGTC 1316
||||||||.|||.|...|||.||..|.|||.|.||||..||.|||||..|
BPUM_2959___g 1267 TTTATGCTCGTCCTCCTTACTCATCTCACGCGGCAAAAAAGTTTTGGCAC 1316
BSNT_04921___ 1317 TCCGTATTTTTCGCCAAACGGAT----TCTTTAGCCTGAAAAATACGGAT 1362
.||||||||.||.||| ||| |.||.|||...||||| .||.
BPUM_2959___g 1317 ACCGTATTTCTCACCA----GATTTTGTGTTCAGCTATAAAAA---CGAA 1359
BSNT_04921___ 1363 GAC---TCCATTATCCG-TCTCCCAATTAAAAACAAACCAAAAGAGGCGA 1408
||| ||||||||.|| |..||| ||||| |||.|||.||
BPUM_2959___g 1360 GACAATTCCATTATTCGATTGCCC--TTAAA---AAATCAACAG------ 1398
BSNT_04921___ 1409 ATAATCCAAATGAGCCAAAAAC-AGACTCCACTG---AAACTTAA 1449
|||.||| ||| ||| || ||.|.|||
BPUM_2959___g 1399 -------AAAGGAG-----AACGAGA------TGGTCAATCATAA 1425
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