Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04917 and BPUM_2956
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04917___yuxN.1.24716.seq
# -bsequence dna-align/BPUM_2956.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04917___yuxN-BPUM_2956.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04917___yuxN-BPUM_2956.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04917___yuxN
# 2: BPUM_2956
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 957
# Identity: 580/957 (60.6%)
# Similarity: 580/957 (60.6%)
# Gaps: 159/957 (16.6%)
# Score: 1559.0
#
#
#=======================================
BSNT_04917___ 1 TTGAAGGAAAAAGAAAAACTGATTATTGAAACAGCCTTAAAACTATTTGC 50
|||||..|.|||||.|||.||||.|||||..|.|.|.|.|||.|.|||||
BPUM_2956 1 TTGAAAAAGAAAGAGAAAATGATCATTGAGGCCGGCATGAAATTGTTTGC 50
BSNT_04917___ 51 CCAAAAAGGATACAACTCAACATCAGTTCAGGAAATCGCAAAAGAATGCA 100
|...|||||.|||||..||||.||.|||||||||||.||..|.||||||.
BPUM_2956 51 CAGCAAAGGCTACAATACAACGTCTGTTCAGGAAATTGCGGATGAATGCC 100
BSNT_04917___ 101 AAATATCTAAAGGCGCTTTTTATATTTATTTTCCTTCGAAAGAAGCGCTT 150
|.||.||.||.||.|||||||||.||||||||...||.||.|||||.||.
BPUM_2956 101 ACATGTCAAAGGGTGCTTTTTATCTTTATTTTAAATCAAAGGAAGCACTG 150
BSNT_04917___ 151 CTTCTCTCTATGCTGAACTACTATTATGATAAAACGTTTACCCGAATTTT 200
||..|.||.||..||.|.||||||||||||||....||||||||.|||..
BPUM_2956 151 CTCATTTCAATCTTGCATTACTATTATGATAAGGTATTTACCCGGATTCA 200
BSNT_04917___ 201 AAATATTAAAACGAAGGGCGACAGCCCCA---GAACGGCTTACCGTAAAC 247
..|..||.||||..||||||.|| |.||| ||| ||.||||||||||
BPUM_2956 201 TGAGGTTCAAACAGAGGGCGGCA-CACCAAAGGAA--GCCTACCGTAAAC 247
BSNT_04917___ 248 AGCTGACCGTCCTCTATGAAAACATTCTTG-AACACAAAGATTTTATCAG 296
||||.||.|||..|||.||.||.||| ||| |.||.||.||||||||.|.
BPUM_2956 248 AGCTCACTGTCTACTACGATAATATT-TTGCAGCAAAAGGATTTTATTAA 296
BSNT_04917___ 297 CATGCAGTTGAAG-----GAGGGTTCTCTGCCTTACACAGAAGAAGTGGA 341
.||||||.| ||| ||| |.|||||....|..||||||..|.|
BPUM_2956 297 AATGCAGCT-AAGCGATCGAG----CACTGCCAATGAATGAAGAAACGCA 341
BSNT_04917___ 342 GCAATGCGCAAAAAAGATCCGCCAGTCCTCACTTCAATTTCATATCGACA 391
|||...|||||||.|.|||||.|...||.|..||||..||||.||.||.|
BPUM_2956 342 GCAGCTCGCAAAACAAATCCGGCTTGCCACCGTTCAGCTTCACATTGATA 391
BSNT_04917___ 392 GCCTGCTGAACA--TCTATGGAAAAAAAGCGGAACCGTACACTGCTGAGC 439
.|.| |.|||| |.||||||.|...||||...||.||.|..|||||.|
BPUM_2956 392 ACAT--TAAACAGGTATATGGAGATGTAGCGATTCCTTATATCGCTGATC 439
BSNT_04917___ 440 TTTGTTTTTTAATAGAGGGCATCAGCCAGATTTACCTGGAG--TGC---- 483
|||||||...|||.||||||||.|||||..||||..|.||| |||
BPUM_2956 440 TTTGTTTGACAATTGAGGGCATGAGCCACGTTTATTTCGAGCTTGCGATT 489
BSNT_04917___ 484 ----ATGATTTT--GCTCG-GGTACACTGTGAAGC-CGTCTCAATTAGCT 525
|||||||| |||.| || |||.|.||| .|.|.||| .|.|
BPUM_2956 490 TTATATGATTTTCAGCTAGAGG----CTGAGGAGCTTGCCGCAA--CGAT 533
BSNT_04917___ 526 GATATCATTATGAATCGAATTGATGATATGGTAAAAGGCATGTCTGAACG 575
||| || |.||.||.||||||.||.|....||.|||...||.||
BPUM_2956 534 GAT-TC-------ACCGTATCGATGATTTGATGGGCGGTATGATGGAGCG 575
BSNT_04917___ 576 AAACGATAAGCCTT----TCATCACATTGGAAGAGGCGAGCTCTTTATTC 621
|.|.||| ||| |.|||.|..|.||..|.||||||..||..||.
BPUM_2956 576 AGAAGAT----CTTCCGCTTATCTCTGTAGATCAAGCGAGCGATTGGTTT 621
BSNT_04917___ 622 GGGCCTCT-TACGCACGGACGGCCTGACCCGCTGACTGAATCGATTGTGA 670
||.|||.| ||.|.|.||.|...| |||||||||||.|||||..||.| |
BPUM_2956 622 GGTCCTATATATGAAAGGTCATTC-GACCCGCTGACAGAATCTCTTCT-A 669
BSNT_04917___ 671 AAAGCCTACGTGACAAAATTAACA------GCTTAAACACAAACTCCTCT 714
|||| ||||||.| |||.||.||||
BPUM_2956 670 AAAG------------AATTAAGAGAACAGGCTGAAGCACA--------- 698
BSNT_04917___ 715 CT-TGAATTATCGGA-----GAGCTTGGACATACTTGAAGC--------- 749
|| ||||.| || ||||.| ||..||.|||||||
BPUM_2956 699 CTATGAAGT----GAAAGACGAGCCT-GATTTATTTGAAGCTCTCGGCAT 743
BSNT_04917___ 750 ---AG-AAATGAA-GAAAAAAAC----ACCGAAGCTGGCGATCATAAAAG 790
|| ||||||| .|||.|||| |||.|..|..|..|||.|.||||
BPUM_2956 744 TTTAGAAAATGAATTAAACAAACAGAAACCTAGACAAGTCATCGTGAAAG 793
BSNT_04917___ 791 GAATGAT---TCA--TAA----------------TCTGACGGAGTCTGAA 819
|.|||.| ||| ||| ||.|||..|.||||||
BPUM_2956 794 GCATGCTGTATCAATTAAAATTATACACACCTCTTCAGACCCACTCTGAA 843
BSNT_04917___ 820 GCTCTCGCCAAAGATGCGGAGCAGCTTAAATATTTATTAAAACAGCAACA 869
.|.|| ..|||| |||| ||.|||.||.|.||
BPUM_2956 844 TCACT-------TTTGCG------------TATT--TTGAAAGAGGATCA 872
BSNT_04917___ 870 TATTTAG 876
|.|.||.
BPUM_2956 873 TTTGTAA 879
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