Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04874 and BPUM_2945
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_04874___yusN.1.24716.seq
# -bsequence dna-align/BPUM_2945.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04874___yusN-BPUM_2945.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04874___yusN-BPUM_2945.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04874___yusN
# 2: BPUM_2945
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 356
# Identity: 247/356 (69.4%)
# Similarity: 247/356 (69.4%)
# Gaps: 31/356 ( 8.7%)
# Score: 793.5
#
#
#=======================================
BSNT_04874___ 1 ATGAATCAGCAAA---ATCAAAAAATTAGCAATCCGCAGACACCTGTAC- 46
|||.|.||.|||| |.||||||||..|.|||||.||.||.||.||.|
BPUM_2945 1 ATGGAACAACAAAACCAACAAAAAATCGGGAATCCTCAAACTCCGGTTCC 50
BSNT_04874___ 47 --CGACAACATCGGAA-ATGAATGACAGAGATTTCGTCAACGAATTGCTG 93
|||||||| || ||||||||..|.|||||.||||..||..|..||
BPUM_2945 51 CACGACAACA----AACATGAATGATCGTGATTTTGTCACAGATCTCTTG 96
BSNT_04874___ 94 ACAACCGAAAAATACATGACAACAGCTTATTGCACTGCCTTGCACGAATT 143
.|.||.||||||||.|||||||..|..||...|||.||..|..|||||||
BPUM_2945 97 TCGACTGAAAAATATATGACAAGCGGATACAACACAGCGCTCAACGAATT 146
BSNT_04874___ 144 CAGCCACGAGTCTCTTTATCAGGATATTCAATCCATTTTTGAT-GAGTCA 192
|||.||.||.||.|||||||||||||||| |.|.|.||..|.| ||..|.
BPUM_2945 147 CAGTCATGAATCCCTTTATCAGGATATTC-AGCGAATTGCGCTAGAAACT 195
BSNT_04874___ 193 CAAAAAGCGCAAAGAAAACTATATGATCTCATGTTCCAATATGGATGGTA 242
||.|||.|.||||||.|..||||||||.|||||||||.||||||||||||
BPUM_2945 196 CAGAAAACACAAAGACATTTATATGATGTCATGTTCCGATATGGATGGTA 245
BSNT_04874___ 243 TTCTGTTGAAGCGGAGGATGCACAAAAGCTGCAGCAGTCCTATCAAAAAT 292
||||||||||||.|..||.|..|||||.||.||||||.|..|.||.||.|
BPUM_2945 246 TTCTGTTGAAGCCGCTGAAGAGCAAAAACTCCAGCAGGCACACCAGAAGT 295
BSNT_04874___ 293 TCCAGCAGACCATT--CAGCAGCAGTCTCCTT-------ATCAGCA---- 329
||||||| |.||.| ||| |.||.|||||.| |||| ||
BPUM_2945 296 TCCAGCA-AACACTGACAG-ATCAATCTCCATACGGACCATCA-CAAATG 342
BSNT_04874___ 330 --ATAA 333
||||
BPUM_2945 343 TCATAA 348
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