Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04873 and BPUM_2944

See Amino acid alignment / Visit BSNT_04873 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_04873.1.24716.seq
#    -bsequence dna-align/BPUM_2944.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04873-BPUM_2944.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04873-BPUM_2944.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04873
# 2: BPUM_2944
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 258
# Identity:     176/258 (68.2%)
# Similarity:   176/258 (68.2%)
# Gaps:          21/258 ( 8.1%)
# Score: 502.0
# 
#
#=======================================

BSNT_04873         1 ATGGATAATCAGCAGCAATCTCAA-ATGCCGCCTTCCGTTATTTCGACAA     49
                     .||.|.||||||||  ||  |.|| |||||.||....||.|||||...||
BPUM_2944          1 TTGAACAATCAGCA--AA--TGAATATGCCCCCGCAAGTCATTTCAGTAA     46

BSNT_04873        50 AGGATCATTTGTATCTCA-ATGACATGCTGAACTGGAATTTGCTCGCGAT     98
                     |||||...||||| ||.| |.||.|||.||||.|||||.|||.||||.||
BPUM_2944         47 AGGATTCCTTGTA-CTTAGAGGATATGTTGAATTGGAACTTGATCGCTAT     95

BSNT_04873        99 GAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGC    148
                     ||||||.||.||.||.|||||..||||.|||||.||.|||||.||.||.|
BPUM_2944         96 GAAAAAGGCTCACTTTATGGCTGAGCATTGCCAAGACCAAACATTGAAAC    145

BSNT_04873       149 AAGAACTCGACCGCATCGGACACATGCATCATGATCACTATCAAAGAATA    198
                     |||||.|..|||...|.||.||.|||||.|||.|.||.|| ||.|.|| |
BPUM_2944        146 AAGAATTAAACCAAGTGGGCCAAATGCACCATCAGCATTA-CACACAA-A    193

BSNT_04873       199 T--TAAAGCACCT--GCAGC-CAGGCCAGCAG--CAGT---CCGGCTACA    238
                     |  |..||||..|  ||||| ||||.||  ||  ||||   |.||||..|
BPUM_2944        194 TTCTTCAGCATTTAGGCAGCTCAGGGCA--AGGCCAGTCTACTGGCTTTA    241

BSNT_04873       239 TCCAATAA    246
                     |.|||||.
BPUM_2944        242 TGCAATAG    249


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