Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04861 and BPUM_2937

See Amino acid alignment / Visit BSNT_04861 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence dna-align/BSNT_04861___yusG.1.24716.seq
#    -bsequence dna-align/BPUM_2937.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04861___yusG-BPUM_2937.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04861___yusG-BPUM_2937.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04861___yusG
# 2: BPUM_2937
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 273
# Identity:     162/273 (59.3%)
# Similarity:   162/273 (59.3%)
# Gaps:          63/273 (23.1%)
# Score: 439.0
# 
#
#=======================================

BSNT_04861___      1 ---------ATGGCTTTCGACAAACAAAAGCTCGATGTCACCAATGACGT     41
                              .||.||||..|.|||.||.||.|.|||.|.||..||.|.||
BPUM_2937          1 GTGTCCAATTTGTCTTTTCAAAAAGAACAGGTGGATATAACAGATCATGT     50

BSNT_04861___     42 GACAGGCCGCTTTCAA--AATGGCCGGCTCTCGT--TATATCATGATAAT     87
                     .|||||.|| .|||||  ||.|  |||| .|.||  |.||||||.|.|||
BPUM_2937         51 CACAGGACG-ATTCAAAGAAAG--CGGC-ATGGTGCTGTATCATCAAAAT     96

BSNT_04861___     88 G-AGATGATCGGCCAAATGACAAGCATG--AATGAATATGAGCTTAAGCC    134
                     | ||| |||.|||...||||..||  ||  ||..||||||||.|.||..|
BPUM_2937         97 GAAGA-GATTGGCACGATGATTAG--TGAAAACCAATATGAGTTAAAATC    143

BSNT_04861___    135 CGGTTATTCCTTTGAAAATGAGAAA----TTTTATAAGACAGCCGATGTG    180
                     .||||||||||.|||..|    |||    ||||||        ||     
BPUM_2937        144 AGGTTATTCCTATGATCA----AAATCGTTTTTAT--------CG-----    176

BSNT_04861___    181 GTTTCT---GGAGAC------------GAC-GCAAAATATGTAGATTGTG    214
                        |||   |||.||            ||| |.||||||||||||.||||
BPUM_2937        177 ---TCTGACGGATACATTGACCCACGGGACAGAAAAATATGTAGACTGTG    223

BSNT_04861___    215 ACTACGAAAACGGCTGGTGTTAA    237
                     |..|.|||||.||||||||.|||
BPUM_2937        224 ATGATGAAAATGGCTGGTGCTAA    246


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