Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04859 and BPUM_2935

See Amino acid alignment / Visit BSNT_04859 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04859___yusE.1.24716.seq
#    -bsequence dna-align/BPUM_2935.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04859___yusE-BPUM_2935.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04859___yusE-BPUM_2935.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04859___yusE
# 2: BPUM_2935
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     215/336 (64.0%)
# Similarity:   215/336 (64.0%)
# Gaps:          48/336 (14.3%)
# Score: 695.0
# 
#
#=======================================

BSNT_04859___      1 ATGAAAGAACTCCAAGAACACGAACTCGATCACATTGAAGATGATGTGTA     50
                     ||||||||..|..|||||||.||..||.|..|.||..|.||.|||.|.|.
BPUM_2935          1 ATGAAAGAGATTGAAGAACATGATTTCAAGGAAATAAAGGACGATTTATT     50

BSNT_04859___     51 CCTTCTATATTTATATACTCCGTTTTGCGGCACCTGCCAGCTTGCAAGCA    100
                     .|||.||||.||||||||.|||||||||||.||.||||||||.||||..|
BPUM_2935         51 TCTTTTATACTTATATACACCGTTTTGCGGGACATGCCAGCTGGCAAAGA    100

BSNT_04859___    101 AAATGCTGACAGTGGTGAAAGA---AATGCTGCCGGATGTCGCCTTCTAT    147
                     |||||||..|.||.||   |||   .||||.|||||||||..|.||.||.
BPUM_2935        101 AAATGCTCGCTGTCGT---AGACACCATGCAGCCGGATGTACCTTTTTAC    147

BSNT_04859___    148 CAAAACAATGTCAATTACTCTCC-GACATTCGCAAAAGCGTATCAAATTG    196
                     .||||.||..|.||.|||||.|| |.| ||.||.||.||.|.|.|.||.|
BPUM_2935        148 GAAAATAACTTAAACTACTCACCAGGC-TTTGCGAAGGCTTTTGAGATCG    196

BSNT_04859___    197 AAAGCGTCCCTTGTTTTCTGCTGTTTAAAGGCGGAAAGG-----TGGTCG    241
                     |||||||.|||||.|||||.|||||||||     |||||     ||||..
BPUM_2935        197 AAAGCGTTCCTTGCTTTCTACTGTTTAAA-----AAAGGCGAACTGGTGC    241

BSNT_04859___    242 AAAGAGGATATGCATTTCATTCCGTTTCTTATTTATATGAGCTGA-TCAA    290
                     |||.|||.|||||.|||||.||.|||.|.|||.|..||||..||| |.||
BPUM_2935        242 AAAAAGGCTATGCCTTTCACTCTGTTCCATATCTTCATGAAATGATTGAA    291

BSNT_04859___    291 AC-----AAAAATCATCTTCCGCATCCCATTTATGA    321
                     ||     ||.||                        
BPUM_2935        292 ACCGCTAAATAA------------------------    303


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